Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 2.1e-193 679.9 707 100.0
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 5.1e-102 376.3 319 80.3
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 4.3e-101 373.2 320 78.1
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 2.3e-94 350.9 479 69.5
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 5.6e-93 346.3 489 67.1
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 1.8e-86 324.7 479 67.6
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 2.1e-84 317.8 429 70.9
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 1.1e-83 315.5 454 56.6
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 2.4e-83 314.3 470 49.4
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 6.9e-83 312.8 422 70.9
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 9.0e-83 312.4 453 69.3
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 9.0e-83 312.4 439 56.0
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 3.4e-82 310.5 312 69.2
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 4.5e-82 310.1 491 63.7
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 7.6e-82 309.3 429 70.2
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 2.5e-80 304.3 427 52.7
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 1.8e-78 298.1 307 66.1
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 2.5e-77 294.3 482 66.2
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 1.3e-76 292.0 282 71.3
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 1.3e-76 292.0 426 59.6
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 1.4e-75 288.5 280 70.0
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 4.0e-75 287.0 426 55.2
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 9.0e-75 285.8 482 65.1
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 9.0e-75 285.8 429 66.2
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 1.0e-73 282.3 483 64.8
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 1.3e-73 282.0 439 53.8
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 1.7e-73 281.6 297 63.6
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 3.8e-73 280.4 486 37.4
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 6.5e-73 279.6 315 64.8
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 1.9e-72 278.1 485 58.6
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 5.5e-72 276.6 315 61.6
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 1.2e-71 275.4 315 59.0
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.2e-71 275.4 315 59.0
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 2.7e-71 274.2 312 60.3
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 7.9e-71 272.7 467 60.2
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 2.3e-70 271.2 314 62.1
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 3.9e-70 270.4 480 61.7
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 5.1e-70 270.0 450 52.4
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 7.4e-69 266.2 304 62.5
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 1.6e-68 265.0 448 64.3
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 6.3e-68 263.1 434 66.4
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 1.4e-67 261.9 385 74.3
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.0e-66 258.1 266 67.3
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 4.5e-66 256.9 408 69.1
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 5.9e-66 256.5 385 55.3
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 5.9e-66 256.5 295 62.4
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 1.7e-65 255.0 313 60.7
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 1.1e-64 252.3 385 61.0
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 9.4e-64 249.2 312 58.3
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 6.1e-63 246.5 301 59.8
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 2.3e-62 244.6 304 63.2
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 2.3e-62 244.6 311 58.5
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 8.8e-62 242.7 445 63.1
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 8.8e-62 242.7 271 67.5
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 1.1e-61 242.3 416 48.3
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 2.5e-61 241.1 299 63.9
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 3.3e-61 240.7 282 62.8
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 4.3e-61 240.4 427 60.2
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 9.7e-61 239.2 448 61.4
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 9.7e-61 239.2 424 57.1
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 1.3e-60 238.8 271 67.5
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 1.3e-60 238.8 271 67.5
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 1.7e-60 238.4 269 66.5
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 2.2e-60 238.0 386 67.6
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 2.2e-60 238.0 306 56.2
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 2.8e-60 237.7 299 62.2
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 4.8e-60 236.9 267 61.8
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 8.2e-60 236.1 272 68.8
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 1.4e-59 235.3 443 51.2
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 1.8e-59 235.0 271 66.8
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 1.8e-59 235.0 318 57.5
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 4.1e-59 233.8 272 66.5
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 4.1e-59 233.8 272 66.5
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 5.3e-59 233.4 270 64.4
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 1.5e-58 231.9 268 67.2
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 2.9e-57 227.6 266 60.5
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 5.5e-56 223.4 151 74.8
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 2.7e-55 221.1 431 58.9
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 1.8e-54 218.4 398 54.5
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 8.8e-54 216.1 409 65.5
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 7.4e-53 213.0 455 57.6
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 7.0e-51 206.5 471 54.8
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 1.7e-49 201.8 253 59.3
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 1.2e-42 179.1 218 69.3
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 2.0e-42 178.3 234 60.3
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 6.5e-41 173.3 157 59.2
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 6.5e-41 173.3 390 65.4
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 1.2e-39 169.1 390 65.1
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 2.7e-39 167.9 386 65.3
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 2.7e-39 167.9 228 61.0
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 1.0e-38 166.0 221 62.4
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 5.2e-38 163.7 225 60.4
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 6.8e-38 163.3 422 48.6
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 4.1e-35 154.1 145 62.1
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 7.0e-35 153.3 260 54.2
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 8.5e-33 146.4 221 57.9
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 6.1e-31 140.2 216 58.3
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.8e-30 138.7 216 57.9
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 4.0e-30 137.5 224 70.5
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 2.0e-26 125.2 250 53.6
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 6.6e-25 120.2 219 50.2
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 1.5e-24 119.0 415 27.7
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 1.9e-24 118.6 202 36.6
Lj5P156T63 Lonicera japonica HOM05D006707 ORTHO05D008243 8.0e-23 113.2 75 73.3
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 4.5e-18 97.4 420 26.2
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 1.7e-17 95.5 317 45.4
RhsimUnG0220500 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.9e-17 94.7 53 77.4
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 9.5e-16 89.7 216 29.2
BraA05t22010Z Brassica rapa HOM05D006707 ORTHO05D008243 1.8e-14 85.5 74 55.4
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 8.9e-14 83.2 52 69.2
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 4.4e-13 80.9 55 67.3
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 4.4e-13 80.9 55 67.3
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 3.7e-12 77.8 47 70.2
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 1.9e-11 75.5 221 29.0
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 5.4e-11 73.9 139 32.4
MELO3C017354.2 Cucumis melo HOM05D006707 ORTHO05D008243 7.8e-10 70.1 40 82.5
Manes.06G007451 Manihot esculenta HOM05D006707 ORTHO05D008243 4.3e-08 64.3 40 75.0
QL10p028425 Quercus lobata HOM05D006707 ORTHO05D008243 2.8e-07 61.6 39 76.9
PSO017G1665 Papaver somniferum HOM05D015807 ORTHO05D011376 3.6e-07 61.2 128 29.7
BcaB04g17239 Brassica carinata HOM05D006707 ORTHO05D008243 1.1e-06 59.7 59 57.6


User provided reference genes

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