Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G119300 Carya illinoinensis HOM05D000122 ORTHO05D001883 2.1e-31 138.3 64 100.0
CiPaw.03G091600 Carya illinoinensis HOM05D000122 ORTHO05D001883 1.5e-13 79.0 40 90.0
Atru.chr8.377 Acer truncatum HOM05D000122 ORTHO05D001883 2.0e-13 78.6 40 90.0
Duzib187G1279 Durio zibethinus HOM05D000122 ORTHO05D001883 2.6e-13 78.2 40 87.5
PGR004G1300 Punica granatum HOM05D000122 ORTHO05D001883 2.6e-13 78.2 40 87.5
Dinv33808 Davidia involucrata HOM05D000122 ORTHO05D001883 5.8e-13 77.0 40 87.5
Ciclev10011184m.g Citrus clementina HOM05D000122 ORTHO05D001883 7.5e-13 76.6 40 87.5
Thecc.04G090500 Theobroma cacao HOM05D000122 ORTHO05D001883 9.8e-13 76.3 40 85.0
Cfa007622 Carpinus fangiana HOM05D000122 ORTHO05D001883 1.3e-12 75.9 40 85.0
Haze_14473 Corylus avellana HOM05D000122 ORTHO05D001883 1.3e-12 75.9 40 85.0
CANSAT64G0581 Cannabis sativa HOM05D000122 ORTHO05D001883 1.7e-12 75.5 40 87.5
QL02p039399 Quercus lobata HOM05D000122 ORTHO05D001883 1.7e-12 75.5 40 85.0
QL02p039656 Quercus lobata HOM05D000122 ORTHO05D001883 1.7e-12 75.5 40 85.0
Cpa.g.sc14.141 Carica papaya HOM05D000122 ORTHO05D001883 2.2e-12 75.1 40 80.0
Gohir.A09G012000 Gossypium hirsutum HOM05D000122 ORTHO05D001883 2.2e-12 75.1 40 82.5
Gorai.006G012600 Gossypium raimondii HOM05D000122 ORTHO05D001883 2.2e-12 75.1 40 82.5
Actinidia01966 Actinidia chinensis HOM05D000122 ORTHO05D001883 2.9e-12 74.7 40 82.5
Actinidia01973 Actinidia chinensis HOM05D000122 ORTHO05D001883 2.9e-12 74.7 40 82.5
Duzib147G0988 Durio zibethinus HOM05D000122 ORTHO05D001883 2.9e-12 74.7 40 82.5
FvH4_6g47520 Fragaria vesca HOM05D000122 ORTHO05D001883 2.9e-12 74.7 40 85.0
FAN02G4329 Fragaria x ananassa HOM05D000122 ORTHO05D001883 2.9e-12 74.7 40 85.0
FAN09G1768 Fragaria x ananassa HOM05D000122 ORTHO05D001883 2.9e-12 74.7 40 85.0
FAN14G1421 Fragaria x ananassa HOM05D000122 ORTHO05D001883 2.9e-12 74.7 40 85.0
Gohir.A05G369900 Gossypium hirsutum HOM05D000122 ORTHO05D001883 2.9e-12 74.7 40 82.5
Gohir.D04G045400 Gossypium hirsutum HOM05D000122 ORTHO05D001883 2.9e-12 74.7 40 82.5
Gorai.012G050600 Gossypium raimondii HOM05D000122 ORTHO05D001883 2.9e-12 74.7 40 82.5
Prupe.3G259100 Prunus persica HOM05D000122 ORTHO05D001883 2.9e-12 74.7 40 85.0
vmacro05667 Vaccinium macrocarpon HOM05D000122 ORTHO05D001883 2.9e-12 74.7 40 82.5
CiPaw.04G058800 Carya illinoinensis HOM05D000122 ORTHO05D001883 3.7e-12 74.3 40 85.0
Migut.H00655 Erythranthe guttata HOM05D000122 ORTHO05D001883 3.7e-12 74.3 40 82.5
Migut.K01295 Erythranthe guttata HOM05D000122 ORTHO05D001883 3.7e-12 74.3 40 82.5
Hma1.2p1_1813F.1_g303830 Hydrangea macrophylla HOM05D000122 ORTHO05D001883 3.7e-12 74.3 40 85.0
Hma1.2p1_3044F.1_g332090 Hydrangea macrophylla HOM05D000122 ORTHO05D001883 3.7e-12 74.3 40 85.0
Medtr7g012260 Medicago truncatula HOM05D000122 ORTHO05D001883 3.7e-12 74.3 40 82.5
SGA_v2.0_scaffold148G36487 Striga asiatica HOM05D000122 ORTHO05D001883 3.7e-12 74.3 40 82.5
TPR.G33461 Trifolium pratense HOM05D000122 ORTHO05D001883 3.7e-12 74.3 40 85.0
CSS0009066 Camellia sinensis var. sinensis HOM05D000122 ORTHO05D001883 4.9e-12 73.9 40 85.0
CSS0042780 Camellia sinensis var. sinensis HOM05D000122 ORTHO05D001883 4.9e-12 73.9 40 85.0
CsaV3_5G038390 Cucumis sativus L. HOM05D000122 ORTHO05D001883 4.9e-12 73.9 40 85.0
Gohir.D09G010900 Gossypium hirsutum HOM05D000122 ORTHO05D001883 4.9e-12 73.9 40 80.0
SalBow1G1307 Salvia bowleyana HOM05D000122 ORTHO05D001883 4.9e-12 73.9 40 80.0
RcHm_v2.0_Chr2g0166581 Rosa chinensis HOM05D000122 ORTHO05D001883 6.4e-12 73.6 40 82.5
arahy.Tifrunner.gnm1.ann1.4S0H6B Arachis hypogaea HOM05D000122 ORTHO05D001883 8.3e-12 73.2 40 82.5
arahy.Tifrunner.gnm1.ann1.YA5RRX Arachis hypogaea HOM05D000122 ORTHO05D001883 8.3e-12 73.2 40 82.5
Ca_06804_v3 Cicer arietinum L. HOM05D000122 ORTHO05D001883 8.3e-12 73.2 40 82.5
MD09G1061000 Malus domestica HOM05D000122 ORTHO05D001883 8.3e-12 73.2 39 84.6
Rhsim10G0046800 Rhododendron simsii HOM05D000122 ORTHO05D001883 8.3e-12 73.2 40 80.0
MSTRG.3023 Avicennia marina HOM05D000122 ORTHO05D001883 1.1e-11 72.8 40 80.0
CSS0027865 Camellia sinensis var. sinensis HOM05D000122 ORTHO05D001883 1.1e-11 72.8 40 80.0
Glyma.08G241600 Glycine max HOM05D000122 ORTHO05D001883 1.1e-11 72.8 40 82.5
Glyma.18G263900 Glycine max HOM05D000122 ORTHO05D001883 1.1e-11 72.8 40 82.5
Lj1g0002587 Lotus japonicus HOM05D000122 ORTHO05D001883 1.1e-11 72.8 40 82.5
Dinv11489 Davidia involucrata HOM05D000122 ORTHO05D001883 1.4e-11 72.4 40 82.5
ECA240G2297 Erigeron canadensis HOM05D000122 ORTHO05D001883 1.4e-11 72.4 40 77.5
HanXRQChr03g0071771 Helianthus annuus HOM05D000122 ORTHO05D001883 1.4e-11 72.4 40 80.0
Lsat_1_v5_gn_7_78601 Lactuca sativa HOM05D000122 ORTHO05D001883 1.4e-11 72.4 40 80.0
Lsat_1_v5_gn_9_119321 Lactuca sativa HOM05D000122 ORTHO05D001883 1.4e-11 72.4 40 80.0
Phvul.008G036200 Phaseolus vulgaris HOM05D000122 ORTHO05D001883 1.4e-11 72.4 42 78.6
VMungo1383G1493 Vigna mungo HOM05D000122 ORTHO05D001883 1.4e-11 72.4 42 78.6
AL6G26270 Arabidopsis lyrata HOM05D000122 ORTHO05D001883 1.9e-11 72.0 37 83.8
AT5G15410 Arabidopsis thaliana HOM05D000122 ORTHO05D001883 1.9e-11 72.0 37 83.8
Carub.0006s1358 Capsella rubella HOM05D000122 ORTHO05D001883 1.9e-11 72.0 37 83.8
THA.LOC104821010 Tarenaya hassleriana HOM05D000122 ORTHO05D001883 1.9e-11 72.0 40 80.0
Aa31LG11G14150 Aethionema arabicum HOM05D000122 ORTHO05D001883 2.4e-11 71.6 37 83.8
ClCG11G004620 Citrullus lanatus HOM05D000122 ORTHO05D001883 2.4e-11 71.6 40 82.5
MELO3C022020.2 Cucumis melo HOM05D000122 ORTHO05D001883 2.4e-11 71.6 40 82.5
Eucgr.I01988 Eucalyptus grandis HOM05D000122 ORTHO05D001883 2.4e-11 71.6 37 83.8
Potri.017G089800 Populus trichocarpa HOM05D000122 ORTHO05D001883 2.4e-11 71.6 40 80.0
Sabra04G0066200 Salix brachista HOM05D000122 ORTHO05D001883 2.4e-11 71.6 40 80.0
TAR629G2304 Trochodendron aralioides HOM05D000122 ORTHO05D001883 2.4e-11 71.6 37 81.1
FAN05G0545 Fragaria x ananassa HOM05D000122 ORTHO05D001883 3.2e-11 71.2 40 80.0
Psat3g198400 Pisum sativum HOM05D000122 ORTHO05D001883 3.2e-11 71.2 39 82.1
Sabra17G0079000 Salix brachista HOM05D000122 ORTHO05D001883 3.2e-11 71.2 42 76.2
Solyc02g088560.4 Solanum lycopersicum HOM05D000122 ORTHO05D001883 3.2e-11 71.2 40 80.0
Sopen02g033280 Solanum pennellii HOM05D000122 ORTHO05D001883 3.2e-11 71.2 40 80.0
PGSC0003DMG400001441 Solanum tuberosum HOM05D000122 ORTHO05D001883 3.2e-11 71.2 40 80.0
BcaC04g24235 Brassica carinata HOM05D000422 ORTHO05D002369 4.1e-11 70.9 37 83.8
C09p61710 Brassica napus HOM05D000122 ORTHO05D001883 4.1e-11 70.9 37 83.8
BolC9t59010H Brassica oleracea HOM05D000122 ORTHO05D001883 4.1e-11 70.9 37 83.8
CAN.G206.196 Capsicum annuum HOM05D000122 ORTHO05D001883 4.1e-11 70.9 40 77.5
DCAR_025405 Daucus carota HOM05D000122 ORTHO05D001883 4.1e-11 70.9 40 77.5
Thhalv10012798m.g Eutrema salsugineum HOM05D000122 ORTHO05D001883 4.1e-11 70.9 37 83.8
Sp6g28680 Schrenkiella parvula HOM05D000122 ORTHO05D001883 4.1e-11 70.9 37 83.8
Lju41A7T37 Lonicera japonica HOM05D000122 ORTHO05D001883 5.4e-11 70.5 40 77.5
Peaxi162Scf00166g00824 Petunia axillaris HOM05D000122 ORTHO05D001883 5.4e-11 70.5 40 77.5
TWI60G0098 Tripterygium wilfordii HOM05D000122 ORTHO05D001883 5.4e-11 70.5 37 78.4
DCAR_011060 Daucus carota HOM05D000122 ORTHO05D001883 7.0e-11 70.1 40 82.5
Sed0016242 Sechium edule HOM05D000122 ORTHO05D001883 7.0e-11 70.1 40 77.5
MD17G1056400 Malus domestica HOM05D000122 ORTHO05D001883 9.2e-11 69.7 40 82.5
Nitab4.5_0000565g0070 Nicotiana tabacum HOM05D000122 ORTHO05D001883 9.2e-11 69.7 40 77.5
Nitab4.5_0004545g0010 Nicotiana tabacum HOM05D000122 ORTHO05D001883 9.2e-11 69.7 40 77.5
TAR371G0724 Trochodendron aralioides HOM05D000122 ORTHO05D001883 9.2e-11 69.7 37 78.4
TAR371G0981 Trochodendron aralioides HOM05D000122 ORTHO05D001883 9.2e-11 69.7 37 78.4
Lj4A115T88 Lonicera japonica HOM05D000122 ORTHO05D001883 1.2e-10 69.3 40 77.5
Lalb_Chr10g0093231 Lupinus albus HOM05D000122 ORTHO05D001883 1.2e-10 69.3 36 83.3
BcaNung03310 Brassica carinata HOM05D000122 ORTHO05D001883 1.6e-10 68.9 37 81.1
A10p23480 Brassica napus HOM05D000122 ORTHO05D001883 1.6e-10 68.9 37 81.1
BraA10t44415Z Brassica rapa HOM05D000122 ORTHO05D001883 1.6e-10 68.9 37 81.1
CARHR197900 Cardamine hirsuta HOM05D000122 ORTHO05D001883 1.6e-10 68.9 37 81.1
Lj4C115T18 Lonicera japonica HOM05D000122 ORTHO05D001883 1.6e-10 68.9 40 72.5
Nn4g23339 Nelumbo nucifera HOM05D000122 ORTHO05D001883 1.6e-10 68.9 37 75.7
TWI32G0070 Tripterygium wilfordii HOM05D000122 ORTHO05D001883 1.6e-10 68.9 37 75.7
Aqoxy3G03560 Aquilegia oxysepala HOM05D000122 ORTHO05D001883 2.0e-10 68.6 37 75.7
Cc07_g03860 Coffea canephora HOM05D000122 ORTHO05D001883 2.0e-10 68.6 40 72.5
Nn3g17375 Nelumbo nucifera HOM05D000122 ORTHO05D001883 3.5e-10 67.8 37 75.7
Os03g0758300 Oryza sativa ssp. japonica HOM05D000122 ORTHO05D001883 1.0e-09 66.2 37 81.1
PSO384G2990 Papaver somniferum HOM05D000122 ORTHO05D001883 1.7e-09 65.5 37 75.7
Manes.01G099300 Manihot esculenta HOM05D000122 ORTHO05D001883 3.9e-09 64.3 40 72.5
Manes.02G051000 Manihot esculenta HOM05D000122 ORTHO05D001883 3.9e-09 64.3 40 72.5
QL09p027806 Quercus lobata HOM05D000122 ORTHO05D001883 8.6e-09 63.2 42 69.0
GSVIVG01011487001 Vitis vinifera HOM05D000122 ORTHO05D001883 8.6e-09 63.2 40 72.5
Duzib147G1673 Durio zibethinus HOM05D000122 ORTHO05D001883 2.5e-08 61.6 37 73.0
PSO339G3069 Papaver somniferum HOM05D000122 ORTHO05D001883 2.5e-08 61.6 37 73.0
Gohir.D09G010800 Gossypium hirsutum HOM05D000122 ORTHO05D001883 3.3e-08 61.2 37 73.0
Potri.017G089900 Populus trichocarpa HOM05D000122 ORTHO05D001883 4.3e-08 60.8 37 73.0
PGR083G1869 Punica granatum HOM05D000122 ORTHO05D001883 4.3e-08 60.8 37 70.3
COL.COLO4_21371 Corchorus olitorius HOM05D000122 ORTHO05D001883 7.3e-08 60.1 36 75.0
CANSAT56G4025 Cannabis sativa HOM05D000122 ORTHO05D001883 1.2e-07 59.3 40 67.5
CiPaw.07G184500 Carya illinoinensis HOM05D000122 ORTHO05D001883 1.2e-07 59.3 40 67.5
Lalb_Chr04g0258531 Lupinus albus HOM05D000122 ORTHO05D001883 1.2e-07 59.3 39 56.4
Zm00001eb057860 Zea mays HOM05D000122 ORTHO05D001883 1.2e-07 59.3 36 77.8
Zm00001eb214540 Zea mays HOM05D000122 ORTHO05D001883 1.2e-07 59.3 36 77.8
Sc10g0003310 Simmondsia chinensis HOM05D000122 ORTHO05D001883 1.6e-07 58.9 37 70.3
Thecc.04G090600 Theobroma cacao HOM05D000122 ORTHO05D001883 1.6e-07 58.9 37 70.3
AUR62042559 Chenopodium quinoa HOM05D000122 ORTHO05D001883 2.1e-07 58.5 45 64.4
AUR62018142 Chenopodium quinoa HOM05D000122 ORTHO05D001883 3.6e-07 57.8 42 66.7
Ciclev10011242m.g Citrus clementina HOM05D000122 ORTHO05D001883 3.6e-07 57.8 37 73.0
Gohir.A09G011800 Gossypium hirsutum HOM05D000122 ORTHO05D001883 3.6e-07 57.8 37 70.3
Sed0004368 Sechium edule HOM05D000122 ORTHO05D001883 3.6e-07 57.8 40 65.0
EL10Ac1g00059 Beta vulgaris HOM05D000122 ORTHO05D001883 4.7e-07 57.4 42 64.3
Gorai.006G012500 Gossypium raimondii HOM05D000122 ORTHO05D001883 4.7e-07 57.4 36 72.2
SEGI_20140 Sequoiadendron giganteum HOM05D000122 ORTHO05D001883 6.2e-07 57.0 38 65.8
Hund15563 Selenicereus undatus HOM05D000122 ORTHO05D001883 8.1e-07 56.6 42 61.9
Atru.chr2.1054 Acer truncatum HOM05D000122 ORTHO05D001883 1.1e-06 56.2 37 67.6
Ah.12g062590 Amaranthus hybridus HOM05D000122 ORTHO05D001883 1.4e-06 55.8 42 61.9
Cpa.g.sc14.142 Carica papaya HOM05D000122 ORTHO05D001883 1.4e-06 55.8 37 64.9
ClCG07G017020 Citrullus lanatus HOM05D000122 ORTHO05D001883 1.4e-06 55.8 40 62.5
HPP92_014242 Vanilla planifolia HOM05D000122 ORTHO05D001883 1.8e-06 55.5 38 63.2
Actinidia26243 Actinidia chinensis HOM05D000122 ORTHO05D001883 2.3e-06 55.1 37 64.9
Rhsim08G0073400 Rhododendron simsii HOM05D000122 ORTHO05D001883 2.3e-06 55.1 38 65.8
Eucgr.J01368 Eucalyptus grandis HOM05D000122 ORTHO05D001883 4.0e-06 54.3 37 62.2
Cfa013593 Carpinus fangiana HOM05D000122 ORTHO05D001883 5.2e-06 53.9 39 61.5
Actinidia17572 Actinidia chinensis HOM05D000122 ORTHO05D001883 6.8e-06 53.5 37 62.2
HPP92_026503 Vanilla planifolia HOM05D000122 ORTHO05D001883 6.8e-06 53.5 38 60.5


User provided reference genes

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