Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G112000 Carya illinoinensis HOM05D003169 ORTHO05D003700 1.2e-155 553.1 288 100.0
Cfa017765 Carpinus fangiana HOM05D003169 ORTHO05D003700 1.5e-137 493.0 287 85.4
Haze_18485 Corylus avellana HOM05D003169 ORTHO05D003700 1.5e-132 476.5 330 75.2
Duzib213G0284 Durio zibethinus HOM05D003169 ORTHO05D003700 3.6e-123 445.3 272 81.6
Gohir.D13G130400 Gossypium hirsutum HOM05D003169 ORTHO05D003700 6.8e-122 441.0 272 80.5
Gorai.013G146500 Gossypium raimondii HOM05D003169 ORTHO05D003700 6.8e-122 441.0 272 80.5
TWI38G0104 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 1.2e-121 440.3 272 79.8
Atru.chr1.22 Acer truncatum HOM05D003169 ORTHO05D003700 2.0e-121 439.5 299 77.9
TWI38G0597 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 2.6e-121 439.1 274 79.2
Glyma.15G219200 Glycine max HOM05D003169 ORTHO05D003700 3.4e-121 438.7 274 78.5
Gohir.A13G126700 Gossypium hirsutum HOM05D003169 ORTHO05D003700 5.8e-121 438.0 272 79.8
Thecc.07G189500 Theobroma cacao HOM05D003169 ORTHO05D003700 5.8e-121 438.0 292 77.1
Medtr8g447090 Medicago truncatula HOM05D003169 ORTHO05D003700 7.6e-121 437.6 268 79.1
Dinv42454 Davidia involucrata HOM05D003169 ORTHO05D003700 1.7e-120 436.4 281 76.9
Ca_22977_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 2.2e-120 436.0 269 79.2
Phvul.011G180100 Phaseolus vulgaris HOM05D003169 ORTHO05D003700 6.4e-120 434.5 274 77.7
Nn7g38410 Nelumbo nucifera HOM05D003169 ORTHO05D003700 8.4e-120 434.1 291 74.6
RcHm_v2.0_Chr5g0023151 Rosa chinensis HOM05D003169 ORTHO05D003700 1.4e-119 433.3 274 78.8
PGR031G0700 Punica granatum HOM05D003169 ORTHO05D003700 1.6e-118 429.9 287 74.2
Psat4g185200 Pisum sativum HOM05D003169 ORTHO05D003700 2.1e-118 429.5 269 78.1
FAN16G1231 Fragaria x ananassa HOM05D003169 ORTHO05D003700 3.5e-118 428.7 275 78.2
Glyma.08G233702 Glycine max HOM05D003169 ORTHO05D003700 4.6e-118 428.3 273 77.7
MD10G1218000 Malus domestica HOM05D003169 ORTHO05D003700 1.0e-117 427.2 289 73.4
CSS0011288 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 1.3e-117 426.8 279 77.1
Potri.010G174900 Populus trichocarpa HOM05D003169 ORTHO05D003700 1.3e-117 426.8 295 71.9
QL04p095761 Quercus lobata HOM05D003169 ORTHO05D003700 2.3e-117 426.0 339 66.7
Solyc10g005490.4 Solanum lycopersicum HOM05D003169 ORTHO05D003700 2.3e-117 426.0 279 74.9
vmacro22494 Vaccinium macrocarpon HOM05D003169 ORTHO05D003700 2.3e-117 426.0 286 75.5
Cc00_g09110 Coffea canephora HOM05D003169 ORTHO05D003700 6.6e-117 424.5 294 72.8
FAN25G3213 Fragaria x ananassa HOM05D003169 ORTHO05D003700 8.6e-117 424.1 291 74.6
Sopen10g001470 Solanum pennellii HOM05D003169 ORTHO05D003700 8.6e-117 424.1 279 74.9
ClCG02G018810 Citrullus lanatus HOM05D003169 ORTHO05D003700 1.1e-116 423.7 299 70.9
ECA240G3251 Erigeron canadensis HOM05D003169 ORTHO05D003700 1.5e-116 423.3 266 76.3
Lsat_1_v5_gn_7_69060 Lactuca sativa HOM05D003169 ORTHO05D003700 1.5e-116 423.3 266 77.8
MBI18_g42879_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 1.5e-116 423.3 285 73.7
TPR.G30141 Trifolium pratense HOM05D003169 ORTHO05D003700 1.9e-116 422.9 311 71.1
FvH4_3g13920 Fragaria vesca HOM05D003169 ORTHO05D003700 3.3e-116 422.2 290 74.8
FAN11G1789 Fragaria x ananassa HOM05D003169 ORTHO05D003700 3.3e-116 422.2 290 74.8
FAN21G1262 Fragaria x ananassa HOM05D003169 ORTHO05D003700 5.6e-116 421.4 275 77.1
HanXRQChr03g0077801 Helianthus annuus HOM05D003169 ORTHO05D003700 5.6e-116 421.4 266 78.2
Lalb_Chr19g0133151 Lupinus albus HOM05D003169 ORTHO05D003700 1.2e-115 420.2 288 72.9
Ciclev10004277m.g Citrus clementina HOM05D003169 ORTHO05D003700 1.6e-115 419.9 302 73.2
arahy.Tifrunner.gnm1.ann1.4D9FZH Arachis hypogaea HOM05D003169 ORTHO05D003700 4.7e-115 418.3 288 71.5
Migut.M01496 Erythranthe guttata HOM05D003169 ORTHO05D003700 4.7e-115 418.3 270 75.9
Lj3g0024633 Lotus japonicus HOM05D003169 ORTHO05D003700 4.7e-115 418.3 296 72.3
Oeu005061.1 Olea europaea HOM05D003169 ORTHO05D003700 6.2e-115 417.9 274 73.7
arahy.Tifrunner.gnm1.ann1.0T77JN Arachis hypogaea HOM05D003169 ORTHO05D003700 1.1e-114 417.2 288 71.2
MD05G1239900 Malus domestica HOM05D003169 ORTHO05D003700 2.4e-114 416.0 295 71.5
Sc06g0001640 Simmondsia chinensis HOM05D003169 ORTHO05D003700 4.0e-114 415.2 307 71.0
Lj2A8G63 Lonicera japonica HOM05D003169 ORTHO05D003700 6.8e-114 414.5 272 77.6
Potri.008G081200 Populus trichocarpa HOM05D003169 ORTHO05D003700 6.8e-114 414.5 301 70.4
MSTRG.7098 Avicennia marina HOM05D003169 ORTHO05D003700 8.9e-114 414.1 269 75.5
Sabra10G0134700 Salix brachista HOM05D003169 ORTHO05D003700 2.0e-113 412.9 297 72.1
CsaV3_6G013370 Cucumis sativus L. HOM05D003169 ORTHO05D003700 3.4e-113 412.1 305 67.9
Sed0006985 Sechium edule HOM05D003169 ORTHO05D003700 3.4e-113 412.1 291 72.2
CANSAT56G1976 Cannabis sativa HOM05D003169 ORTHO05D003700 4.4e-113 411.8 284 73.2
Hma1.2p1_0754F.1_g213010 Hydrangea macrophylla HOM05D003169 ORTHO05D003700 9.9e-113 410.6 269 75.5
Manes.16G048930 Manihot esculenta HOM05D003169 ORTHO05D003700 2.2e-112 409.5 272 75.4
CAN.G492.81 Capsicum annuum HOM05D003169 ORTHO05D003700 4.9e-112 408.3 277 74.7
Peaxi162Scf00670g00216 Petunia axillaris HOM05D003169 ORTHO05D003700 4.9e-112 408.3 266 75.9
PSO675G7315 Papaver somniferum HOM05D003169 ORTHO05D003700 3.2e-111 405.6 268 72.8
EL10Ac2g03244 Beta vulgaris HOM05D003169 ORTHO05D003700 5.4e-111 404.8 282 70.9
SGA_v2.0_scaffold186G40168 Striga asiatica HOM05D003169 ORTHO05D003700 9.3e-111 404.1 266 74.1
AUR62041054 Chenopodium quinoa HOM05D003169 ORTHO05D003700 1.6e-110 403.3 282 72.3
Oeu025996.1 Olea europaea HOM05D003169 ORTHO05D003700 4.6e-110 401.7 308 65.9
PSO541G6458 Papaver somniferum HOM05D003169 ORTHO05D003700 6.0e-110 401.4 268 72.0
Prupe.4G126100 Prunus persica HOM05D003169 ORTHO05D003700 3.9e-109 398.7 278 74.1
THA.LOC104812392 Tarenaya hassleriana HOM05D003169 ORTHO05D003700 3.9e-109 398.7 293 73.0
Eucgr.F04478 Eucalyptus grandis HOM05D003169 ORTHO05D003700 8.7e-109 397.5 291 69.1
CARHR073010 Cardamine hirsuta HOM05D003169 ORTHO05D003700 3.3e-108 395.6 304 69.4
AT1G79350 Arabidopsis thaliana HOM05D003169 ORTHO05D003700 9.6e-108 394.0 302 68.9
C06p53240 Brassica napus HOM05D003169 ORTHO05D003700 9.6e-108 394.0 297 71.0
BolC6t40342H Brassica oleracea HOM05D003169 ORTHO05D003700 9.6e-108 394.0 297 71.0
BraA07t31952Z Brassica rapa HOM05D003169 ORTHO05D003700 1.3e-107 393.7 302 69.9
Sp5g34410 Schrenkiella parvula HOM05D003169 ORTHO05D003700 1.6e-107 393.3 302 69.2
BcaC08g47495 Brassica carinata HOM05D003169 ORTHO05D003700 1.4e-106 390.2 297 70.7
Carub.0002s2621 Capsella rubella HOM05D003169 ORTHO05D003700 2.4e-106 389.4 303 69.6
Aa31LG4G1680 Aethionema arabicum HOM05D003169 ORTHO05D003700 3.1e-106 389.0 305 66.6
BcaB02g08679 Brassica carinata HOM05D003169 ORTHO05D003700 3.1e-106 389.0 301 68.8
Thhalv10018021m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 3.1e-106 389.0 301 67.8
HPP92_005947 Vanilla planifolia HOM05D003169 ORTHO05D003700 6.9e-106 387.9 276 71.0
Aqoxy1G01380 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 1.2e-105 387.1 266 71.8
unitig_32.g11074 Utricularia gibba HOM05D003169 ORTHO05D003700 1.5e-105 386.7 267 70.8
DCAR_016853 Daucus carota HOM05D003169 ORTHO05D003700 2.0e-105 386.3 278 71.6
A07p44430 Brassica napus HOM05D003169 ORTHO05D003700 3.4e-105 385.6 299 69.2
Rhsim06G0244800 Rhododendron simsii HOM05D003169 ORTHO05D003700 5.8e-105 384.8 397 54.2
MELO3C019615.2 Cucumis melo HOM05D003169 ORTHO05D003700 9.3e-103 377.5 404 52.0
TAR627G0022 Trochodendron aralioides HOM05D003169 ORTHO05D003700 9.6e-100 367.5 288 67.4
AUR62043014 Chenopodium quinoa HOM05D003169 ORTHO05D003700 1.3e-99 367.1 356 56.7
Nitab4.5_0003291g0050 Nicotiana tabacum HOM05D003169 ORTHO05D003700 8.1e-99 364.4 253 73.1
Nitab4.5_0007774g0010 Nicotiana tabacum HOM05D003169 ORTHO05D003700 1.8e-98 363.2 255 71.4
Zm00001eb430630 Zea mays HOM05D003169 ORTHO05D003700 2.0e-97 359.8 319 58.6
GSVIVG01036703001 Vitis vinifera HOM05D003169 ORTHO05D003700 2.3e-93 346.3 328 57.3
Zm00001eb413950 Zea mays HOM05D003169 ORTHO05D003700 3.0e-93 345.9 343 54.2
HanXRQChr13g0408921 Helianthus annuus HOM05D003169 ORTHO05D003700 4.8e-91 338.6 264 65.2
HanXRQChr13g0408941 Helianthus annuus HOM05D003169 ORTHO05D003700 4.8e-91 338.6 264 65.2
Oeu029454.1 Olea europaea HOM05D003169 ORTHO05D003700 6.5e-88 328.2 269 62.8
Os08g0223700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 1.2e-86 323.9 318 57.5
ATR0794G028 Amborella trichopoda HOM05D003169 ORTHO05D003700 6.0e-86 321.6 281 60.9
arahy.Tifrunner.gnm1.ann1.THX68V Arachis hypogaea HOM05D003169 ORTHO05D003700 2.3e-85 319.7 284 57.0
arahy.Tifrunner.gnm1.ann1.JSN7JY Arachis hypogaea HOM05D003169 ORTHO05D003700 3.3e-84 315.8 284 56.7
AagrBONN_evm.TU.Sc2ySwM_228.2486 Anthoceros agrestis HOM05D003169 ORTHO05D003700 9.6e-84 314.3 304 53.9
TAR629G1197 Trochodendron aralioides HOM05D003169 ORTHO05D003700 2.1e-83 313.2 220 74.5
Peaxi162Scf00420g00518 Petunia axillaris HOM05D003169 ORTHO05D003700 4.8e-83 312.0 204 78.9
Lalb_Chr20g0108381 Lupinus albus HOM05D003169 ORTHO05D003700 1.1e-82 310.8 286 55.6
Actinidia26204 Actinidia chinensis HOM05D003169 ORTHO05D003700 1.3e-80 303.9 268 60.4
Oeu005060.1 Olea europaea HOM05D003169 ORTHO05D003700 2.2e-80 303.1 275 59.6
Ah.16g106160 Amaranthus hybridus HOM05D003169 ORTHO05D003700 6.5e-80 301.6 262 61.1
VMungo1127G0472 Vigna mungo HOM05D003169 ORTHO05D003700 1.4e-74 283.9 149 88.6
Psat0s11g0040 Pisum sativum HOM05D003169 ORTHO05D003700 2.4e-74 283.1 269 55.8
TPR.G3619 Trifolium pratense HOM05D003169 ORTHO05D003700 2.4e-74 283.1 267 55.8
Ca_03187_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 3.4e-73 279.3 267 54.7
DCAR_013706 Daucus carota HOM05D003169 ORTHO05D003700 1.6e-70 270.4 270 56.7
Medtr2g063620 Medicago truncatula HOM05D003169 ORTHO05D003700 1.6e-70 270.4 282 52.1
Medtr6g091930 Medicago truncatula HOM05D003169 ORTHO05D003700 1.6e-70 270.4 282 52.1
Mapoly0153s0011 Marchantia polymorpha HOM05D003169 ORTHO05D003700 2.7e-70 269.6 307 49.5
TPR.G3624 Trifolium pratense HOM05D003169 ORTHO05D003700 6.1e-70 268.5 197 66.5
Pp3c3_5410 Physcomitrium patens HOM05D003169 ORTHO05D003700 1.0e-69 267.7 311 48.9
Lj3g0007581 Lotus japonicus HOM05D003169 ORTHO05D003700 1.8e-69 266.9 265 53.6
Medtr2g063813 Medicago truncatula HOM05D003169 ORTHO05D003700 1.8e-69 266.9 221 60.2
Medtr6g091960 Medicago truncatula HOM05D003169 ORTHO05D003700 1.8e-69 266.9 221 60.2
Rhsim02G0183500 Rhododendron simsii HOM05D003169 ORTHO05D003700 2.3e-69 266.5 149 87.2
DCAR_013705 Daucus carota HOM05D003169 ORTHO05D003700 8.5e-64 248.1 228 58.3
Cpa.g.sc32.155 Carica papaya HOM05D003169 ORTHO05D003700 6.3e-59 231.9 124 88.7
CBR_g11926 Chara braunii HOM05D003169 ORTHO05D000002 2.0e-57 226.9 351 40.5
MD07G1097900 Malus domestica HOM05D003169 ORTHO05D003700 2.9e-56 223.0 152 71.7
TPR.G3613 Trifolium pratense HOM05D003169 ORTHO05D003700 3.6e-54 216.1 173 64.2
Cpa.g.sc32.156 Carica papaya HOM05D003169 ORTHO05D003700 1.1e-42 177.9 132 72.7
CSS0003080 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 9.1e-42 174.9 93 88.2
PGSC0003DMG400011248 Solanum tuberosum HOM05D003169 ORTHO05D003700 3.0e-37 159.8 107 70.1
Haze_26591 Corylus avellana HOM05D003169 ORTHO05D003700 8.8e-37 158.3 145 54.5
SGA_v2.0_scaffold4G01863 Striga asiatica HOM05D003169 ORTHO05D003700 4.4e-36 156.0 116 69.0
Cre01.g053250 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 4.1e-34 149.4 142 52.1
Cre02.g095045 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 9.2e-34 148.3 136 54.4
Hund12039 Selenicereus undatus HOM05D003169 ORTHO05D003700 5.0e-32 142.5 116 59.5
VMungo1127G0791 Vigna mungo HOM05D003169 ORTHO05D003700 3.3e-31 139.8 118 59.3
COL.COLO4_25000 Corchorus olitorius HOM05D003169 ORTHO05D003700 5.7e-28 129.0 87 73.6
MCO01G648 Micromonas commoda HOM05D003169 ORTHO05D003700 5.7e-28 129.0 130 50.0
TPR.G373 Trifolium pratense HOM05D003169 ORTHO05D003700 1.4e-26 124.4 122 54.9
Cre13.g578501 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 1.6e-25 120.9 118 51.7
MCO16G570 Micromonas commoda HOM05D003169 ORTHO05D003700 1.0e-24 118.2 131 48.9
PRCOL_00005992 Prasinoderma coloniale HOM05D003169 ORTHO05D003700 1.5e-23 114.4 146 45.2
Cre07.g350100 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 9.5e-23 111.7 119 47.1
Actinidia33342 Actinidia chinensis HOM05D003169 ORTHO05D003700 2.9e-19 100.1 59 86.4
QL04p095737 Quercus lobata HOM05D003169 ORTHO05D003700 2.9e-19 100.1 137 47.4
Os04g0609900 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 4.3e-15 86.3 104 45.2
Os04g0610200 Oryza sativa ssp. japonica HOM05D034463 ORTHO05D036998 6.2e-14 82.4 103 45.6
Potri.002G262101 Populus trichocarpa HOM05D003169 ORTHO05D003700 2.7e-09 67.0 33 87.9
Cre02.g095052 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 1.7e-08 64.3 63 52.4


User provided reference genes

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