Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 2.3e-136 489.2 300 100.0
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 1.9e-98 363.2 300 66.3
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 5.5e-98 361.7 300 66.3
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 1.4e-88 330.5 299 66.9
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 1.1e-87 327.4 300 73.0
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 7.4e-87 324.7 289 72.7
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 2.2e-86 323.2 289 75.8
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 8.2e-86 321.2 289 75.4
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 4.1e-85 318.9 301 60.1
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.2e-84 317.4 302 61.9
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 4.5e-84 315.5 301 61.1
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 5.9e-84 315.1 262 80.5
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 7.7e-84 314.7 296 59.5
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 7.7e-84 314.7 302 61.9
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 1.0e-83 314.3 277 67.5
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 1.3e-83 313.9 303 66.0
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 1.3e-83 313.9 301 58.5
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 2.2e-83 313.2 304 65.8
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.2e-83 313.2 292 73.3
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.9e-83 312.8 302 61.6
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 6.5e-83 311.6 301 59.1
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 6.5e-83 311.6 287 76.0
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 8.5e-83 311.2 308 65.3
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.5e-82 310.5 305 60.7
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 1.9e-82 310.1 303 59.1
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.5e-82 309.7 286 77.3
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 2.5e-82 309.7 286 75.2
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 4.2e-82 308.9 302 64.2
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 4.2e-82 308.9 289 71.3
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 7.2e-82 308.1 292 68.5
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 1.6e-81 307.0 302 60.3
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.7e-81 306.2 284 77.1
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.8e-80 303.5 306 63.7
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 1.1e-79 300.8 282 73.0
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 2.0e-79 300.1 293 63.8
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 2.0e-79 300.1 307 62.9
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 3.3e-79 299.3 303 63.0
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 4.4e-79 298.9 309 64.4
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 5.7e-79 298.5 311 66.2
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 5.7e-79 298.5 298 57.7
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.3e-78 297.4 294 58.2
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 2.8e-78 296.2 303 58.1
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 8.2e-78 294.7 290 59.3
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 3.1e-77 292.7 302 58.9
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 3.1e-77 292.7 305 60.0
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 7.0e-77 291.6 291 61.9
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.5e-76 288.9 248 70.2
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 1.0e-75 287.7 308 58.8
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 3.8e-75 285.8 303 61.7
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.5e-75 285.0 303 61.1
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 6.5e-75 285.0 310 62.6
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 1.1e-74 284.3 310 58.1
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 1.9e-74 283.5 307 62.2
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 5.5e-74 282.0 282 72.0
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 5.5e-74 282.0 301 62.5
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 2.1e-73 280.0 287 58.2
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.1e-73 280.0 288 62.5
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.1e-73 280.0 288 62.5
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.1e-73 280.0 288 62.5
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.7e-73 279.6 288 62.5
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 3.6e-73 279.3 288 56.6
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 2.3e-72 276.6 247 62.3
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 4.0e-72 275.8 286 69.2
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 8.8e-72 274.6 282 57.1
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 2.6e-71 273.1 292 59.9
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 5.7e-71 271.9 292 59.9
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 7.5e-71 271.6 301 53.2
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 1.3e-70 270.8 260 64.6
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 2.2e-70 270.0 299 56.9
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 2.2e-70 270.0 291 58.8
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 2.8e-70 269.6 292 56.8
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 2.8e-70 269.6 292 68.2
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 4.8e-70 268.9 282 58.9
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 6.3e-70 268.5 288 62.5
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 1.1e-69 267.7 292 67.8
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 1.1e-69 267.7 284 53.9
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 1.8e-69 266.9 263 62.0
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 3.1e-69 266.2 292 58.9
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 7.0e-69 265.0 311 51.4
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 1.2e-68 264.2 300 57.3
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 1.2e-68 264.2 300 57.3
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 1.2e-68 264.2 300 57.3
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 2.0e-68 263.5 259 63.7
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 2.7e-68 263.1 302 57.6
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.5e-68 262.7 294 68.0
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 4.5e-68 262.3 303 57.8
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 7.7e-68 261.5 266 60.9
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 1.0e-67 261.2 301 53.5
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.7e-67 260.4 292 54.8
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 6.5e-67 258.5 302 54.0
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 6.5e-67 258.5 289 67.5
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 1.1e-66 257.7 292 66.8
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 1.5e-66 257.3 304 57.6
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 2.5e-66 256.5 304 53.3
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 5.5e-66 255.4 268 60.4
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 7.2e-66 255.0 261 60.5
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 7.2e-66 255.0 268 61.6
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 9.4e-66 254.6 291 52.6
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 1.2e-65 254.2 301 52.5
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 2.7e-65 253.1 298 51.7
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 2.7e-65 253.1 301 58.8
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 2.7e-65 253.1 265 56.2
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 2.7e-65 253.1 298 52.3
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 4.7e-65 252.3 263 57.4
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 1.0e-64 251.1 308 56.5
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 1.4e-64 250.8 262 54.6
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.0e-64 249.6 299 54.8
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 6.8e-64 248.4 268 59.3
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 1.2e-63 247.7 299 51.5
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.3e-62 244.2 292 53.1
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.7e-62 243.8 291 59.8
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.2e-62 243.4 298 59.4
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.2e-62 243.4 310 49.7
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 3.7e-62 242.7 246 57.3
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 1.4e-61 240.7 302 49.7
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 2.4e-61 240.0 289 51.2
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 1.2e-60 237.7 300 49.7
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 1.3e-59 234.2 308 49.4
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 5.0e-59 232.3 293 50.9
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 1.9e-58 230.3 295 55.3
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 3.3e-58 229.6 305 47.9
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 5.6e-58 228.8 285 50.5
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.1e-57 226.9 190 71.1
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.1e-57 225.3 291 57.4
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 1.5e-55 220.7 297 54.5
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 4.4e-55 219.2 299 52.8
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 6.4e-54 215.3 239 55.6
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 8.3e-54 214.9 263 51.0
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.4e-53 214.2 290 53.1
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 1.7e-51 207.2 250 60.8
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.0e-48 198.0 263 49.0
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 2.3e-48 196.8 294 51.4
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.6e-47 193.4 204 61.3
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 3.4e-47 193.0 266 50.0
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.2e-41 174.5 309 41.4
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.6e-41 174.1 186 78.5
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 2.8e-41 173.3 125 70.4
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 4.7e-41 172.6 311 49.2
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 1.8e-40 170.6 238 45.0
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 1.2e-39 167.9 213 50.7
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 2.0e-39 167.2 299 46.8
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 5.8e-39 165.6 167 68.9
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 1.7e-38 164.1 269 40.5
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 6.4e-38 162.2 190 66.3
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 8.3e-38 161.8 124 68.5
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.2e-36 157.9 187 61.5
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 4.6e-36 156.0 141 58.2
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 6.0e-36 155.6 284 39.4
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 1.5e-34 151.0 277 38.6
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 1.5e-34 151.0 288 38.9
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 4.3e-34 149.4 138 55.1
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 3.1e-32 143.3 267 40.1
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 8.9e-32 141.7 127 57.5
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 1.2e-28 131.3 187 59.9
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 3.0e-27 126.7 117 63.2
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 3.0e-27 126.7 244 32.8
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 1.5e-26 124.4 259 37.1
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 5.6e-26 122.5 116 63.8
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 5.6e-26 122.5 116 63.8
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 6.2e-25 119.0 284 31.7
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 1.2e-23 114.8 285 35.4
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 4.4e-23 112.8 109 55.0
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 4.4e-23 112.8 201 40.8
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.4e-23 112.8 122 54.9
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 8.7e-19 98.6 83 61.4
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 1.5e-18 97.8 241 34.4
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 4.3e-18 96.3 75 73.3
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 1.6e-17 94.4 209 34.9
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.2e-15 88.2 66 66.7
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.5e-15 87.8 86 66.3
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.4e-14 82.4 114 54.4
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.4e-13 80.5 56 69.6
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 7.1e-13 79.0 57 70.2
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.6e-12 77.8 92 56.5
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.5e-10 71.2 300 28.0
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 3.3e-10 70.1 280 28.6
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 1.4e-08 64.7 49 67.3
DCAR_018080 Daucus carota HOM05D002169 ORTHO05D018172 1.2e-07 61.6 104 39.4
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 1.2e-07 61.6 59 64.4
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 3.4e-07 60.1 36 77.8


User provided reference genes

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