Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 0.0e+00 4039.2 2162 100.0
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 0.0e+00 2397.1 2218 65.3
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 0.0e+00 2389.8 2078 67.0
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 0.0e+00 2120.9 2112 61.6
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 0.0e+00 1392.9 2122 47.0
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 0.0e+00 1370.9 2094 46.5
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 0.0e+00 1280.4 2116 45.5
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 0.0e+00 1271.9 2087 45.6
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 0.0e+00 1241.5 2101 44.9
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 0.0e+00 1220.3 2120 44.3
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 0.0e+00 1199.9 2123 43.9
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 0.0e+00 1196.8 2144 42.5
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 0.0e+00 1194.9 2151 43.5
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 0.0e+00 1138.3 1975 43.1
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 0.0e+00 1132.9 2168 41.6
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 0.0e+00 1129.8 2102 42.7
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 0.0e+00 1129.8 2081 42.7
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 0.0e+00 1114.4 2121 41.8
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 0.0e+00 1103.2 2076 43.0
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 0.0e+00 1102.0 2073 43.0
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 0.0e+00 1102.0 2167 39.1
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 0.0e+00 1097.8 2143 40.9
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 0.0e+00 1094.7 1808 45.2
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 0.0e+00 1094.3 2163 41.6
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 0.0e+00 1092.8 2155 41.2
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 0.0e+00 1087.0 2151 40.8
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 0.0e+00 1083.6 2058 43.1
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.1e-304 1051.2 2109 42.6
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 4.1e-288 996.1 2100 39.9
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.7e-286 990.7 2109 40.3
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.5e-285 987.6 1444 48.5
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 5.6e-277 959.1 2145 40.0
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 6.4e-273 945.7 2075 40.4
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 1.9e-269 934.1 2024 40.6
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 7.3e-269 932.2 2170 38.3
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 1.1e-267 928.3 2181 39.3
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 2.2e-265 920.6 2122 39.3
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 1.3e-260 904.8 1939 40.5
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 2.1e-260 904.0 2011 39.2
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 6.9e-259 899.0 2020 39.6
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 9.0e-251 872.1 2133 38.3
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 1.7e-249 867.8 1830 39.2
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 6.7e-246 855.9 2151 38.2
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.1e-245 855.1 2148 38.5
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 6.9e-243 845.9 1245 48.6
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 1.1e-235 822.0 2152 36.9
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 1.0e-233 815.5 2136 35.9
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 6.5e-233 812.8 2145 35.7
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 9.7e-229 798.9 1920 38.8
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 2.1e-223 781.2 1919 37.2
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 2.0e-221 774.6 1964 37.0
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 2.2e-220 771.2 787 62.8
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 3.3e-213 747.3 800 59.8
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 1.0e-209 735.7 2285 34.4
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 1.3e-201 708.8 1093 47.4
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 2.4e-195 688.0 1955 34.1
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 1.5e-192 678.7 734 60.9
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 2.9e-188 664.5 1651 37.7
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.3e-185 655.6 802 56.0
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 2.8e-183 647.9 1930 34.7
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 2.1e-175 621.7 2189 33.2
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 2.2e-172 611.7 2091 32.7
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 3.6e-167 594.3 2064 32.7
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 1.8e-166 592.0 2161 31.7
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 5.2e-166 590.5 971 45.5
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 4.9e-164 583.9 2127 30.7
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 1.1e-163 582.8 1928 33.3
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 4.1e-163 580.9 2072 31.2
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 9.2e-163 579.7 2095 32.3
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 1.3e-161 575.9 2072 31.1
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 1.9e-160 572.0 482 71.6
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 4.3e-160 570.9 880 48.4
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 7.1e-155 553.5 2262 30.8
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 1.2e-154 552.7 2145 31.6
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 1.2e-154 552.7 1988 32.1
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 8.7e-153 546.6 980 44.1
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 8.7e-153 546.6 837 49.1
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 3.6e-151 541.2 2084 31.5
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 4.5e-149 534.3 1024 43.2
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 5.8e-149 533.9 2113 31.8
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 1.9e-147 528.9 1879 33.5
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 4.6e-146 524.2 824 45.4
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 3.0e-145 521.5 1965 29.9
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 1.4e-142 512.7 800 48.0
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 1.8e-142 512.3 2115 29.9
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 3.1e-142 511.5 858 44.4
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 5.3e-142 510.8 800 48.2
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 2.2e-140 505.4 858 44.1
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 1.4e-139 502.7 854 44.3
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 1.9e-139 502.3 852 44.2
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 5.5e-139 500.7 2141 31.1
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 1.1e-134 486.5 836 46.8
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 2.4e-134 485.3 1935 28.6
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 1.7e-132 479.2 837 46.7
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 2.2e-132 478.8 738 48.9
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 2.1e-130 472.2 1935 29.4
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 1.0e-129 469.9 949 41.8
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 1.1e-128 466.5 934 41.5
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 9.0e-126 456.8 895 39.7
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 2.6e-117 428.7 510 56.9
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 1.4e-113 416.4 494 50.8
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 3.1e-110 405.2 820 42.6
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 2.2e-108 399.1 736 41.2
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 3.2e-107 395.2 751 44.3
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 1.6e-106 392.9 953 37.6
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 1.3e-100 373.2 818 39.9
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 1.6e-98 366.3 871 38.5
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 4.4e-96 358.2 840 38.6
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 2.2e-87 329.3 1538 28.9
Dinv14698 Davidia involucrata HOM05D000237 ORTHO05D006530 8.0e-82 310.8 1227 31.4
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 1.8e-78 299.7 934 31.7
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 5.9e-77 294.7 340 58.2
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 1.3e-76 293.5 673 36.3
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 2.3e-76 292.7 569 43.8
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 6.1e-74 284.6 1718 27.5
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 1.2e-72 280.4 256 59.0
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 2.6e-72 279.3 900 32.7
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 5.6e-67 261.5 1613 27.3
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 1.8e-65 256.5 280 63.2
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 6.6e-60 238.0 737 31.3
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 1.3e-52 213.8 512 35.2
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 3.6e-50 205.7 579 37.3
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 3.9e-44 185.7 834 30.7
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 1.9e-43 183.3 223 48.0
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 4.3e-43 182.2 206 68.0
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 6.2e-42 178.3 149 64.4
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 5.8e-40 171.8 221 45.2
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.2e-37 164.1 134 58.2
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 6.6e-36 158.3 105 76.2
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 1.4e-30 140.6 388 34.0
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 3.5e-29 136.0 141 54.6
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 1.1e-25 124.4 247 37.2
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 7.9e-21 108.2 95 68.4
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 3.3e-19 102.8 126 46.0
MD08G1160200 Malus domestica HOM05D000237 ORTHO05D006530 1.1e-17 97.8 317 32.5
MD08G1160100 Malus domestica HOM05D000237 ORTHO05D006530 3.4e-16 92.8 156 40.4
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 5.8e-16 92.0 132 45.5
BcaC04g19090 Brassica carinata HOM05D001762 ORTHO05D001774 4.3e-11 75.9 121 38.8
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 5.7e-11 75.5 143 34.3
Oeu047175.1 Olea europaea HOM05D000237 ORTHO05D006530 4.8e-10 72.4 136 33.8
SEGI_15365 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 3.1e-09 69.7 529 25.9
Lj4P681T20 Lonicera japonica HOM05D000237 ORTHO05D006530 8.5e-07 61.6 142 38.7


User provided reference genes

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