Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 0.0e+00 1308.9 652 100.0
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 0.0e+00 1095.9 705 80.9
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 0.0e+00 1095.5 654 83.2
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 0.0e+00 1094.7 654 83.0
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 0.0e+00 1087.4 581 90.7
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 0.0e+00 1081.2 656 81.4
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 0.0e+00 1075.1 683 81.0
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 5.4e-311 1070.5 655 81.2
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 2.2e-309 1065.1 665 80.3
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 3.2e-308 1061.2 653 80.1
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 5.4e-308 1060.4 657 81.1
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 5.4e-308 1060.4 607 85.3
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 5.4e-308 1060.4 667 80.7
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 9.2e-308 1059.7 661 79.9
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 3.5e-307 1057.7 655 80.6
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 7.8e-307 1056.6 663 80.1
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 1.3e-306 1055.8 658 79.9
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.3e-306 1055.8 656 80.5
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 1.7e-306 1055.4 655 80.6
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 1.7e-306 1055.4 656 79.9
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 2.3e-306 1055.0 660 79.5
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 2.3e-306 1055.0 658 79.0
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.2e-304 1049.3 655 80.2
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 1.2e-304 1049.3 655 79.5
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 3.6e-304 1047.7 586 86.3
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 4.7e-304 1047.3 657 79.9
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 8.0e-304 1046.6 658 79.5
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 4.0e-303 1044.3 642 79.8
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 1.2e-302 1042.7 658 80.9
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 1.7e-301 1038.9 607 83.2
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 1.6e-299 1032.3 584 85.1
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 1.3e-298 1029.2 591 83.9
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 1.3e-298 1029.2 581 85.0
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 3.9e-298 1027.7 661 77.8
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 1.5e-297 1025.8 678 76.4
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.9e-297 1025.4 660 77.9
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 9.5e-297 1023.1 623 79.1
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.1e-296 1021.9 660 77.6
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 3.6e-296 1021.1 646 79.3
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 1.4e-295 1019.2 659 77.2
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 3.1e-295 1018.1 646 79.4
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 4.4e-294 1014.2 587 83.3
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 5.8e-294 1013.8 594 81.8
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 5.8e-294 1013.8 573 84.5
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 4.9e-293 1010.7 579 83.8
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 8.3e-293 1010.0 580 83.3
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.1e-292 1009.6 582 83.5
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.4e-292 1009.2 579 83.8
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 2.4e-292 1008.4 573 84.3
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 3.2e-292 1008.1 608 80.6
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 9.2e-292 1006.5 571 84.1
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 2.1e-291 1005.4 583 82.8
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 2.7e-291 1005.0 583 83.0
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 3.5e-291 1004.6 657 76.7
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 4.6e-291 1004.2 578 82.2
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 6.0e-291 1003.8 579 83.4
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 1.0e-290 1003.0 574 82.9
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.0e-290 1003.0 643 77.1
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 1.0e-290 1003.0 583 82.2
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 2.3e-290 1001.9 647 76.4
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 3.9e-290 1001.1 586 81.2
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 6.6e-290 1000.3 581 82.3
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 8.6e-290 1000.0 584 81.5
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 3.3e-289 998.0 568 83.1
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 5.6e-289 997.3 582 81.4
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 9.6e-289 996.5 597 79.7
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 3.6e-288 994.6 571 83.0
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 8.1e-288 993.4 582 81.1
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 1.1e-287 993.0 595 79.8
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.1e-287 993.0 571 82.5
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 1.8e-287 992.3 582 81.3
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 5.2e-287 990.7 571 82.7
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 5.2e-287 990.7 582 81.1
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 6.8e-287 990.3 621 78.3
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 1.5e-286 989.2 579 80.7
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 4.4e-286 987.6 582 80.9
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 5.8e-286 987.3 583 81.5
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.7e-285 985.7 582 82.5
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 3.8e-285 984.6 583 80.8
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 1.1e-284 983.0 584 79.8
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 2.4e-284 981.9 546 84.2
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 3.2e-284 981.5 576 81.9
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 7.1e-284 980.3 574 80.8
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 9.3e-284 979.9 579 81.0
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 1.6e-283 979.2 583 80.1
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 3.5e-283 978.0 574 80.7
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 6.0e-283 977.2 574 80.7
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 1.7e-282 975.7 585 80.5
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 1.1e-281 973.0 582 80.4
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 2.1e-280 968.8 573 80.6
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 4.8e-280 967.6 548 85.0
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 8.1e-280 966.8 583 79.4
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 8.1e-280 966.8 528 86.7
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 2.6e-278 961.8 577 79.9
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 2.6e-278 961.8 577 80.1
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 1.4e-276 956.1 755 66.6
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 5.4e-276 954.1 550 81.8
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 7.1e-276 953.7 531 84.7
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 5.1e-274 947.6 543 82.3
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 2.1e-272 942.2 545 80.9
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 1.1e-271 939.9 584 76.5
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 2.4e-271 938.7 575 79.7
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 2.4e-271 938.7 597 77.2
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 5.3e-271 937.6 573 77.8
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 6.9e-271 937.2 575 79.5
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 2.2e-269 932.2 582 78.0
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 1.3e-264 916.4 532 81.0
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 4.8e-264 914.4 650 71.1
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 1.2e-259 899.8 564 77.1
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 2.7e-259 898.7 581 75.6
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 3.4e-254 881.7 642 69.8
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 4.5e-254 881.3 546 76.4
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 7.6e-254 880.6 571 76.7
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 1.8e-250 869.4 495 83.8
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 5.1e-242 841.3 555 74.8
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 1.5e-241 839.7 448 89.3
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 9.7e-241 837.0 448 88.8
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 1.4e-236 823.2 547 70.6
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 9.4e-236 820.5 439 89.1
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 1.8e-234 816.2 537 74.9
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 2.6e-233 812.4 547 70.9
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 1.1e-228 797.0 609 63.5
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 4.0e-210 735.3 517 69.8
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.8e-207 726.5 490 73.5
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 2.3e-197 693.0 452 73.9
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 7.1e-183 644.8 538 58.6
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 1.5e-177 627.1 361 81.7
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 1.6e-174 617.1 344 87.2
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 3.4e-169 599.4 581 57.1
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 2.9e-152 543.1 361 75.1
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 1.5e-148 530.8 549 54.6
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 4.3e-148 529.3 576 47.9
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 1.1e-146 524.6 278 89.6
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 2.2e-144 516.9 417 64.0
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 6.5e-144 515.4 280 86.1
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 5.9e-137 492.3 309 79.9
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 2.2e-120 437.2 574 43.9
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 2.8e-115 420.2 288 70.1
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 3.5e-97 360.1 643 36.1
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 1.4e-93 348.2 263 69.2
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 2.8e-91 340.5 184 85.9
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 2.5e-87 327.4 179 88.3
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.8e-85 319.3 179 85.5
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 2.6e-84 317.4 188 77.7
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 2.2e-83 314.3 594 36.2
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 1.4e-82 311.6 164 90.9
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 2.3e-80 304.3 499 37.9
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.7e-75 288.1 585 34.4
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 2.0e-68 264.6 609 32.8
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 4.9e-67 260.0 321 46.1
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.9e-66 258.1 140 86.4
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 1.9e-63 248.1 197 64.5
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 4.7e-62 243.4 597 30.8
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 5.8e-52 209.9 120 84.2
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.9e-51 207.6 117 83.8
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 5.6e-47 193.4 107 85.0
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.4e-45 188.7 100 89.0
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 7.6e-44 183.0 126 69.8
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 3.0e-40 171.0 155 58.1
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.4e-36 157.5 113 69.0
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 8.2e-30 136.3 139 53.2
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 8.2e-30 136.3 77 79.2
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 3.1e-29 134.4 92 70.7
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 3.1e-29 134.4 67 89.6
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 2.6e-28 131.3 65 90.8
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 5.9e-20 103.6 64 76.6
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 7.9e-17 93.2 68 66.2
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.3e-11 75.9 54 68.5
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 1.7e-11 75.5 78 56.4
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 6.5e-11 73.6 64 56.2
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 1.0e-08 66.2 69 47.8
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 7.4e-07 60.1 38 65.8


User provided reference genes

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