Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 1.1e-133 479.9 235 100.0
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 8.1e-105 384.0 225 81.8
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 2.4e-104 382.5 225 81.3
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 9.3e-101 370.5 225 77.3
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 7.1e-93 344.4 225 73.8
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 3.9e-91 338.6 229 69.9
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 3.3e-90 335.5 226 70.4
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 5.6e-90 334.7 229 68.6
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 1.3e-89 333.6 225 71.1
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 6.2e-89 331.3 225 71.1
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 8.1e-89 330.9 229 67.7
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 1.1e-88 330.5 226 71.2
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 1.1e-88 330.5 225 69.3
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.1e-88 330.5 225 69.8
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 1.4e-88 330.1 229 68.1
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 1.8e-88 329.7 227 68.3
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 3.1e-88 328.9 225 69.3
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 3.1e-88 328.9 230 69.6
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 5.3e-88 328.2 225 68.9
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 9.0e-88 327.4 225 68.9
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 9.0e-88 327.4 225 70.2
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 2.0e-87 326.2 225 69.3
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 4.5e-87 325.1 225 70.2
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.8e-87 324.7 226 68.1
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 5.8e-87 324.7 225 70.7
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 9.9e-87 323.9 231 70.1
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.3e-86 323.6 225 67.6
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 4.9e-86 321.6 225 67.6
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-85 320.5 231 70.1
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-85 320.5 231 69.7
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-85 320.5 231 70.1
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.4e-85 320.1 228 70.6
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 2.4e-85 319.3 226 68.6
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 9.3e-85 317.4 226 70.4
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 9.3e-85 317.4 225 67.1
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 1.2e-84 317.0 226 67.7
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 1.2e-84 317.0 226 69.5
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 1.2e-84 317.0 228 71.1
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 6.0e-84 314.7 224 67.4
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 2.3e-83 312.8 225 67.6
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 5.1e-83 311.6 225 65.8
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 1.5e-82 310.1 226 65.9
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 1.9e-82 309.7 225 64.9
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 1.9e-82 309.7 224 64.7
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 1.9e-82 309.7 225 64.9
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 1.6e-81 306.6 219 64.4
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 3.7e-81 305.4 226 68.1
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 6.2e-81 304.7 224 64.7
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 8.1e-81 304.3 224 65.2
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 3.1e-80 302.4 224 65.6
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 6.9e-80 301.2 219 63.5
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.5e-79 300.1 225 64.4
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.5e-79 300.1 225 64.0
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 5.8e-79 298.1 225 63.6
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.0e-78 297.4 226 62.4
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 6.5e-78 294.7 226 63.3
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 9.3e-77 290.8 226 62.8
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 2.7e-76 289.3 226 61.5
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 3.5e-76 288.9 226 61.5
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 1.0e-75 287.3 237 57.4
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 1.8e-75 286.6 226 63.3
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 1.5e-74 283.5 227 60.4
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.4e-74 281.2 228 59.6
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 9.6e-74 280.8 228 60.5
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.3e-73 278.1 191 68.6
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.8e-72 276.6 225 61.8
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 2.4e-72 276.2 226 58.0
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 9.0e-72 274.2 225 56.9
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.0e-70 270.8 220 60.5
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 6.5e-70 268.1 227 58.6
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 2.5e-69 266.2 227 57.7
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 4.2e-69 265.4 207 61.4
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 5.5e-69 265.0 228 57.0
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 5.5e-69 265.0 230 56.1
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 7.2e-69 264.6 229 56.8
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 7.2e-69 264.6 218 59.2
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.2e-68 263.8 229 57.6
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.6e-68 263.5 229 56.8
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 1.6e-68 263.5 229 57.6
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 2.7e-68 262.7 228 56.6
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 6.1e-68 261.5 204 61.3
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 7.9e-68 261.2 229 56.3
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 2.3e-67 259.6 208 62.5
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 3.9e-67 258.8 227 56.4
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 5.1e-67 258.5 228 56.1
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 1.1e-66 257.3 228 57.9
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 5.7e-66 255.0 229 55.0
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 3.7e-65 252.3 231 55.8
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 4.8e-65 251.9 229 54.6
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 8.2e-65 251.1 226 55.8
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.1e-64 250.8 216 58.3
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 1.1e-64 250.8 229 55.9
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 6.5e-62 241.5 227 53.7
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 6.5e-62 241.5 229 53.3
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 7.9e-60 234.6 247 48.2
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 8.8e-59 231.1 217 56.2
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 2.5e-58 229.6 220 55.0
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 7.7e-55 218.0 219 51.1
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.1e-53 214.2 239 48.1
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 1.1e-53 214.2 239 47.3
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 1.9e-53 213.4 233 49.4
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 8.8e-51 204.5 144 68.1
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 2.8e-49 199.5 231 46.8
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 7.7e-47 191.4 228 44.3
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 2.2e-46 189.9 230 44.8
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.5e-45 187.2 227 47.1
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 4.2e-45 185.7 237 42.6
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 1.6e-44 183.7 236 41.1
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 2.1e-44 183.3 240 40.8
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.6e-44 182.6 246 41.9
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 8.0e-44 181.4 228 42.5
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.0e-43 181.0 248 40.3
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.3e-43 179.9 226 43.4
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 3.0e-43 179.5 228 39.9
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 5.2e-43 178.7 267 38.6
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 8.8e-43 177.9 245 40.0
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.1e-42 177.6 229 42.8
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.3e-42 176.0 225 43.1
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 5.7e-42 175.3 261 36.4
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 3.7e-41 172.6 177 48.6
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 3.7e-41 172.6 177 48.6
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 8.2e-41 171.4 150 54.7
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 2.4e-40 169.9 234 41.0
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 3.1e-40 169.5 259 39.4
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.3e-40 168.7 232 38.8
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.0e-38 164.5 260 36.9
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 6.5e-38 161.8 260 37.3
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 6.5e-38 161.8 229 38.0
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 8.5e-38 161.4 227 44.1
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.7e-36 155.6 227 43.2
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 2.0e-34 150.2 208 42.3
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 3.4e-34 149.4 217 40.1
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.7e-34 148.7 248 35.9
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 7.5e-34 148.3 125 58.4
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 8.3e-33 144.8 206 39.3
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 1.8e-32 143.7 160 42.5
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 4.1e-32 142.5 143 49.7
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 5.4e-32 142.1 217 35.5
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 2.0e-31 140.2 218 36.2
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 5.9e-31 138.7 172 42.4
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 2.9e-30 136.3 263 34.2
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 2.9e-30 136.3 141 46.1
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 3.2e-29 132.9 107 58.9
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 3.2e-29 132.9 233 35.6
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.2e-29 131.7 135 50.4
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.7e-28 129.8 135 48.9
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 8.0e-28 128.3 223 36.3
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 8.0e-28 128.3 159 41.5
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 8.8e-27 124.8 133 48.1
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 7.5e-26 121.7 228 31.1
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 4.9e-25 119.0 114 51.8
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 9.2e-24 114.8 142 42.3
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 1.7e-22 110.5 147 41.5
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 1.5e-21 107.5 146 38.4
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 1.9e-21 107.1 147 39.5
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.2e-18 97.8 110 41.8
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.1e-16 91.3 75 57.3
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 3.2e-16 89.7 206 29.1
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.1e-16 89.4 158 34.2
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.7e-15 86.7 213 31.9
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.9e-14 82.8 103 39.8
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 1.9e-13 80.5 251 25.9
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.6e-12 76.3 166 30.1
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 9.8e-10 68.2 76 48.7
A01p04700 Brassica napus HOM05D001292 ORTHO05D001202 6.0e-07 58.9 200 25.5
BraA01t00453Z Brassica rapa HOM05D001292 ORTHO05D001202 6.0e-07 58.9 200 25.5
Carub.0007s0682 Capsella rubella HOM05D001292 ORTHO05D001202 3.9e-06 56.2 205 23.4
Cfa026731 Carpinus fangiana HOM05D004427 ORTHO05D005381 3.9e-06 56.2 116 29.3
CARHR241710 Cardamine hirsuta HOM05D001292 ORTHO05D001202 5.0e-06 55.8 201 24.4


User provided reference genes

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