Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 5.8e-104 380.9 198 100.0
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 2.0e-80 302.8 187 84.5
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 2.0e-80 302.8 178 87.1
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 2.6e-80 302.4 179 86.0
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 2.7e-77 292.4 179 81.6
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 3.5e-77 292.0 176 83.0
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 7.9e-77 290.8 170 84.7
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 7.9e-77 290.8 179 82.1
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 1.0e-76 290.4 180 83.9
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 6.6e-76 287.7 177 80.2
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 8.7e-76 287.3 187 81.3
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 4.3e-75 285.0 172 83.1
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 4.3e-75 285.0 172 83.1
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 4.3e-75 285.0 177 82.5
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 4.3e-75 285.0 179 82.1
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 5.6e-75 284.6 178 82.0
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 1.6e-74 283.1 179 81.0
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 2.8e-74 282.3 179 81.6
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 1.1e-73 280.4 194 76.3
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 9.0e-73 277.3 177 79.1
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 4.5e-72 275.0 179 78.8
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 5.8e-72 274.6 182 79.1
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 5.8e-72 274.6 179 78.8
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 7.6e-72 274.2 177 78.0
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 9.9e-72 273.9 177 79.7
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 2.2e-71 272.7 172 76.7
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 2.9e-71 272.3 182 79.7
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 4.9e-71 271.6 179 78.8
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 8.4e-71 270.8 180 76.7
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 8.4e-71 270.8 178 77.5
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 1.9e-70 269.6 178 78.7
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 2.4e-70 269.2 179 77.1
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 3.2e-70 268.9 178 78.7
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 5.5e-70 268.1 179 77.1
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 1.2e-69 266.9 177 77.4
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 1.2e-69 266.9 177 77.4
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 1.2e-69 266.9 178 78.1
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 1.6e-69 266.5 164 81.7
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 3.5e-69 265.4 179 76.5
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 4.6e-69 265.0 178 74.7
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 4.6e-69 265.0 179 76.0
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 7.9e-69 264.2 179 76.0
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 1.0e-68 263.8 179 76.0
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 1.0e-68 263.8 178 77.0
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 1.8e-68 263.1 174 77.6
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 1.8e-68 263.1 199 70.9
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 2.3e-68 262.7 190 71.6
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 3.0e-68 262.3 167 78.4
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 1.3e-66 256.9 174 75.9
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 2.1e-66 256.1 174 73.0
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 2.8e-66 255.8 164 82.3
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 8.1e-66 254.2 179 74.3
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 8.1e-66 254.2 168 78.6
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 1.8e-65 253.1 177 74.0
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 2.4e-65 252.7 179 73.7
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 3.1e-65 252.3 178 73.6
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 5.3e-65 251.5 179 73.7
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 3.4e-64 248.8 147 83.7
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 5.8e-64 248.1 182 71.4
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 2.2e-63 246.1 177 69.5
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 2.2e-63 246.1 169 76.3
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 2.9e-63 245.7 179 69.8
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 4.9e-63 245.0 177 69.5
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 4.9e-63 245.0 185 73.0
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 6.5e-63 244.6 173 71.7
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 8.4e-63 244.2 177 68.9
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 8.4e-63 244.2 177 74.0
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 1.9e-62 243.0 178 73.0
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 1.9e-62 243.0 178 73.0
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 2.5e-62 242.7 208 64.9
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 2.5e-62 242.7 177 69.5
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 1.2e-61 240.4 178 71.3
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 1.2e-61 240.4 179 69.8
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 1.6e-61 240.0 172 70.3
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 2.7e-61 239.2 177 70.1
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 1.8e-60 236.5 138 86.2
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 1.8e-60 236.5 166 69.3
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 3.9e-60 235.3 181 69.6
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 6.7e-60 234.6 178 66.9
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 6.7e-60 234.6 178 71.3
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 8.7e-60 234.2 181 66.9
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 1.5e-59 233.4 174 69.0
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 2.5e-59 232.6 176 71.0
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 4.3e-59 231.9 236 57.6
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 2.8e-58 229.2 177 67.8
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 2.8e-58 229.2 138 82.6
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 1.4e-57 226.9 138 81.9
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 1.8e-57 226.5 182 67.0
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 2.6e-56 222.6 187 63.6
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 2.6e-56 222.6 160 71.9
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 3.8e-55 218.8 138 79.0
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 6.5e-55 218.0 166 69.3
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 1.9e-54 216.5 137 78.8
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 3.2e-54 215.7 178 64.6
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 2.7e-53 212.6 178 64.6
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 3.0e-52 209.1 136 74.3
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 3.9e-52 208.8 132 78.0
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 3.9e-52 208.8 179 63.1
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 5.1e-52 208.4 135 74.1
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 8.7e-52 207.6 159 65.4
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 8.7e-52 207.6 159 65.4
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 1.5e-51 206.8 159 65.4
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 1.9e-51 206.5 164 67.7
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 1.3e-50 203.8 168 66.7
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 2.8e-50 202.6 181 61.3
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 1.4e-49 200.3 123 80.5
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 3.4e-48 195.7 156 64.7
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 1.0e-47 194.1 107 88.8
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 1.4e-46 190.3 125 74.4
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 3.6e-45 185.7 113 79.6
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 3.0e-44 182.6 179 58.7
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 2.8e-42 176.0 143 65.7
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 4.1e-41 172.2 175 53.7
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 9.1e-41 171.0 179 57.0
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 8.5e-39 164.5 170 52.4
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 2.1e-37 159.8 188 48.9
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 6.7e-36 154.8 186 48.4
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 4.4e-35 152.1 113 64.6
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 5.0e-31 138.7 143 53.1
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 1.1e-27 127.5 119 57.1
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 3.1e-25 119.4 135 48.1
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 5.3e-25 118.6 123 56.1
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 1.2e-24 117.5 104 58.7
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 1.6e-24 117.1 99 59.6
MD11G1153100 Malus domestica HOM05D005995 ORTHO05D007362 3.8e-23 112.5 80 71.2
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 5.5e-22 108.6 75 78.7
MD11G1071300 Malus domestica HOM05D005995 ORTHO05D007362 8.0e-21 104.8 83 66.3
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 8.8e-20 101.3 85 61.2
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 4.8e-18 95.5 137 42.3
Nn2g14856 Nelumbo nucifera HOM05D005995 ORTHO05D007362 1.0e-12 77.8 60 66.7
Cre17.g719550 Chlamydomonas reinhardtii HOM05D005995 ORTHO05D007362 2.0e-11 73.6 54 59.3
Pp3c4_14820 Physcomitrium patens HOM05D005995 ORTHO05D311899 2.0e-08 63.5 120 36.7
MD11G1071400 Malus domestica HOM05D005995 ORTHO05D007362 5.9e-08 62.0 43 76.7
Medtr6g460490 Medicago truncatula HOM05D005995 ORTHO05D007362 6.6e-07 58.5 35 77.1
MCO04G081 Micromonas commoda HOM05D005995 ORTHO05D007362 7.3e-06 55.1 124 33.9


User provided reference genes

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