Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.1e-78 296.6 146 100.0
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 8.9e-78 293.5 146 97.9
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 2.0e-77 292.4 145 97.2
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 2.0e-77 292.4 145 97.2
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 7.3e-72 273.9 144 91.7
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 1.2e-71 273.1 145 89.7
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 1.6e-71 272.7 144 91.0
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.6e-71 272.7 144 91.0
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.6e-71 272.7 144 91.0
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.6e-71 272.7 144 91.0
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.6e-71 272.7 144 91.0
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.6e-71 272.7 144 91.0
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 1.6e-71 272.7 144 91.0
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.6e-71 272.7 144 91.0
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 2.1e-71 272.3 144 91.0
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 2.1e-71 272.3 144 91.0
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 2.8e-71 271.9 144 89.6
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 3.6e-71 271.6 144 90.3
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 3.6e-71 271.6 144 90.3
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 3.6e-71 271.6 144 90.3
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 3.6e-71 271.6 145 89.0
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 3.6e-71 271.6 144 90.3
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.7e-71 271.2 144 90.3
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.7e-71 271.2 144 90.3
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 4.7e-71 271.2 144 90.3
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 4.7e-71 271.2 144 89.6
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 4.7e-71 271.2 144 89.6
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 4.7e-71 271.2 144 89.6
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 6.2e-71 270.8 144 90.3
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 6.2e-71 270.8 144 90.3
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 6.2e-71 270.8 144 90.3
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 6.2e-71 270.8 144 90.3
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 6.2e-71 270.8 144 90.3
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 6.2e-71 270.8 145 87.6
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 6.2e-71 270.8 145 87.6
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 6.2e-71 270.8 145 88.3
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 6.2e-71 270.8 144 90.3
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 8.1e-71 270.4 144 89.6
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 8.1e-71 270.4 144 90.3
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 8.1e-71 270.4 144 89.6
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 8.1e-71 270.4 144 90.3
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 1.1e-70 270.0 144 89.6
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 1.1e-70 270.0 145 89.7
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 1.4e-70 269.6 144 88.9
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.4e-70 269.6 145 87.6
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 1.8e-70 269.2 144 89.6
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 1.8e-70 269.2 144 89.6
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 1.8e-70 269.2 144 89.6
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.8e-70 269.2 144 90.3
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 1.8e-70 269.2 144 89.6
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 1.8e-70 269.2 144 89.6
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.8e-70 269.2 144 89.6
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 1.8e-70 269.2 144 89.6
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 2.4e-70 268.9 144 88.9
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 2.4e-70 268.9 144 88.9
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 3.1e-70 268.5 145 87.6
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 3.1e-70 268.5 144 88.2
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 3.1e-70 268.5 144 89.6
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 3.1e-70 268.5 144 90.3
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 3.1e-70 268.5 145 88.3
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 4.0e-70 268.1 144 89.6
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.0e-70 268.1 144 89.6
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.0e-70 268.1 144 89.6
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.0e-70 268.1 144 89.6
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.0e-70 268.1 144 89.6
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.0e-70 268.1 144 89.6
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 4.0e-70 268.1 144 88.9
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 4.0e-70 268.1 145 87.6
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 4.0e-70 268.1 144 89.6
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 4.0e-70 268.1 144 89.6
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 4.0e-70 268.1 144 89.6
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 5.2e-70 267.7 144 89.6
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 5.2e-70 267.7 144 90.3
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 5.2e-70 267.7 144 90.3
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 5.2e-70 267.7 144 89.6
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 5.2e-70 267.7 144 88.9
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 5.2e-70 267.7 144 89.6
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 5.2e-70 267.7 144 87.5
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 6.9e-70 267.3 144 87.5
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 6.9e-70 267.3 144 87.5
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 6.9e-70 267.3 144 87.5
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 6.9e-70 267.3 144 87.5
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 6.9e-70 267.3 144 87.5
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 6.9e-70 267.3 144 87.5
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 9.0e-70 266.9 144 87.5
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.2e-69 266.5 144 89.6
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.2e-69 266.5 144 89.6
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 1.5e-69 266.2 144 87.5
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.0e-69 265.8 144 86.1
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.0e-69 265.8 144 86.1
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 2.6e-69 265.4 145 87.6
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 2.6e-69 265.4 144 88.2
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 4.4e-69 264.6 144 85.4
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 5.8e-69 264.2 144 88.9
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 5.8e-69 264.2 144 86.8
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 7.6e-69 263.8 144 87.5
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 7.6e-69 263.8 144 87.5
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 7.6e-69 263.8 144 87.5
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 7.6e-69 263.8 144 87.5
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 7.6e-69 263.8 144 87.5
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 9.9e-69 263.5 143 87.4
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 1.7e-68 262.7 144 86.8
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 2.2e-68 262.3 145 86.2
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 2.9e-68 261.9 144 86.8
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 2.9e-68 261.9 144 86.8
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 2.9e-68 261.9 143 87.4
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 3.8e-68 261.5 144 86.1
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 1.4e-67 259.6 144 85.4
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 2.4e-67 258.8 144 84.7
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.2e-66 256.5 143 85.3
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 4.6e-66 254.6 152 82.2
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 2.3e-65 252.3 138 86.2
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 2.3e-65 252.3 143 86.0
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 4.3e-64 248.1 139 84.9
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 5.3e-62 241.1 131 86.3
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 1.5e-61 239.6 132 87.1
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 2.2e-60 235.7 128 85.2
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 4.9e-60 234.6 124 89.5
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 8.4e-60 233.8 124 88.7
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 1.1e-59 233.4 124 88.7
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 1.1e-59 233.4 124 88.7
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 1.4e-59 233.0 146 77.4
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 1.4e-59 233.0 146 77.4
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.4e-59 233.0 126 85.7
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.9e-59 232.6 124 86.3
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 2.4e-59 232.3 138 81.2
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 2.4e-59 232.3 144 81.2
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.2e-59 231.9 127 85.0
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 4.2e-59 231.5 124 87.9
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 5.4e-59 231.1 125 85.6
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 7.1e-59 230.7 135 83.0
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 9.3e-59 230.3 125 85.6
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 9.3e-59 230.3 125 86.4
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 9.3e-59 230.3 125 85.6
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.2e-58 229.9 139 80.6
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.6e-58 229.6 124 87.9
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 2.1e-58 229.2 182 67.6
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 2.1e-58 229.2 124 85.5
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 3.5e-58 228.4 124 86.3
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 6.0e-58 227.6 146 70.5
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 1.3e-57 226.5 125 84.8
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 1.8e-57 226.1 144 70.1
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 3.0e-57 225.3 124 83.9
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 5.1e-57 224.6 126 84.1
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 5.6e-56 221.1 117 93.2
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 2.1e-55 219.2 137 76.6
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 1.8e-54 216.1 142 71.1
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 3.8e-52 208.4 149 71.1
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 4.3e-48 194.9 144 70.8
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 2.8e-47 192.2 103 88.3
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 8.2e-47 190.7 103 86.4
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 5.3e-46 188.0 103 86.4
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 6.9e-46 187.6 119 73.9
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 2.9e-44 182.2 115 73.0
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 5.1e-41 171.4 115 76.5
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.8e-38 162.9 87 86.2
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 2.9e-36 155.6 81 92.6
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 1.8e-33 146.4 80 82.5
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.5e-32 142.5 73 94.5
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 2.8e-31 139.0 75 84.0
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.9e-30 134.4 140 53.6
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 1.4e-25 120.2 66 83.3
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.3e-25 119.4 71 80.3
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.0e-24 116.3 71 78.9
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 9.7e-24 114.0 71 77.5
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 7.7e-21 104.4 71 74.6
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 5.7e-16 88.2 45 95.6
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 5.3e-14 81.6 74 56.8
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 7.0e-14 81.3 46 82.6


User provided reference genes

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