Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 2.1e-244 848.6 416 100.0
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 1.4e-144 516.9 396 66.9
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 2.4e-144 516.2 411 64.5
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 2.4e-136 489.6 398 64.1
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 1.3e-81 307.8 419 45.3
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 8.5e-81 305.1 418 44.0
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 1.9e-80 303.9 420 44.5
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 2.5e-80 303.5 408 44.9
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 5.5e-80 302.4 419 45.1
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 1.8e-78 297.4 406 44.8
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.0e-78 296.6 419 43.7
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.9e-78 296.2 418 43.3
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 5.1e-78 295.8 421 43.5
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 1.4e-75 287.7 399 44.6
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 2.3e-70 270.4 401 43.1
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 1.1e-69 268.1 418 40.2
QL04p021455 Quercus lobata HOM05D007266 ORTHO05D005982 1.4e-67 261.2 210 61.0
QL07p029255 Quercus lobata HOM05D007266 ORTHO05D005982 1.4e-67 261.2 210 61.0
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 1.4e-67 261.2 397 40.8
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 2.5e-64 250.4 332 45.2
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 6.1e-63 245.7 420 40.5
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 1.8e-62 244.2 294 47.6
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 6.3e-60 235.7 395 40.8
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 3.1e-59 233.4 416 38.7
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 1.2e-58 231.5 395 39.7
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 4.5e-58 229.6 403 39.2
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 4.5e-58 229.6 495 34.9
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 4.2e-56 223.0 353 40.5
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 5.5e-56 222.6 400 38.0
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 5.2e-54 216.1 350 41.7
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 5.2e-54 216.1 343 39.4
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 6.7e-54 215.7 325 39.7
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 6.7e-54 215.7 325 39.7
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 6.7e-54 215.7 279 45.5
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 1.2e-53 214.9 398 35.9
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 5.3e-51 206.1 413 36.8
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 7.0e-51 205.7 326 39.9
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 9.1e-51 205.3 326 38.3
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 2.0e-50 204.1 348 38.2
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 1.7e-49 201.1 433 35.1
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.7e-49 201.1 355 37.2
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 3.8e-49 199.9 305 41.6
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 6.5e-49 199.1 328 38.4
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 2.5e-48 197.2 399 34.6
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 5.5e-48 196.1 435 34.5
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 2.1e-47 194.1 394 36.5
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 8.0e-47 192.2 182 61.5
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 8.0e-47 192.2 182 61.5
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 1.0e-46 191.8 347 36.9
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.4e-46 191.4 345 36.2
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 1.8e-46 191.0 407 37.1
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 2.3e-46 190.7 389 35.2
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 4.4e-45 186.4 342 38.0
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 4.4e-45 186.4 338 37.6
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 3.5e-42 176.8 329 35.6
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 2.3e-41 174.1 337 35.0
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 1.2e-39 168.3 329 35.0
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 5.2e-38 162.9 325 34.2
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 2.0e-37 161.0 331 35.3
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 1.8e-35 154.5 239 40.6
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 2.4e-35 154.1 338 33.1
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 7.0e-35 152.5 426 32.9
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 8.6e-33 145.6 306 35.0
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 2.5e-32 144.1 472 29.0
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 3.3e-32 143.7 354 33.1
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 7.3e-32 142.5 312 37.5
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 2.1e-31 141.0 392 31.9
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.8e-31 140.6 191 47.1
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 2.3e-30 137.5 362 33.1
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 3.0e-30 137.1 362 33.7
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 4.0e-30 136.7 279 35.1
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 6.8e-30 136.0 346 32.4
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 1.2e-29 135.2 353 32.9
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 7.5e-29 132.5 342 32.5
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 1.1e-27 128.6 363 34.2
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 1.8e-27 127.9 348 33.6
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 4.1e-27 126.7 336 31.0
CSS0040931 Camellia sinensis var. sinensis HOM05D007266 ORTHO05D005982 9.2e-27 125.6 221 36.7
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 2.0e-26 124.4 324 31.2
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 5.9e-26 122.9 336 30.7
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 7.8e-26 122.5 236 38.1
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 3.9e-25 120.2 333 29.7
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 8.6e-25 119.0 325 32.3
Dinv32008 Davidia involucrata HOM05D007266 ORTHO05D005982 1.1e-24 118.6 202 42.1
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 1.2e-23 115.2 323 30.3
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 1.2e-23 115.2 323 30.3
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 2.1e-23 114.4 324 31.5
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 2.8e-23 114.0 328 30.2
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 8.0e-23 112.5 319 31.7
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 1.1e-22 112.1 338 31.1
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 1.4e-22 111.7 330 30.9
AUR62031740 Chenopodium quinoa HOM05D007266 ORTHO05D005982 1.4e-22 111.7 380 30.8
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 1.8e-22 111.3 326 30.1
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 2.3e-22 110.9 332 28.3
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 2.3e-22 110.9 326 30.1
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 3.1e-22 110.5 334 29.3
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 4.0e-22 110.2 325 29.2
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 5.2e-22 109.8 338 30.8
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 5.2e-22 109.8 338 30.8
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 2.0e-21 107.8 331 29.0
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 2.0e-21 107.8 402 27.1
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 4.4e-21 106.7 276 29.3
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 9.8e-21 105.5 324 29.3
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 9.8e-21 105.5 331 28.1
MBI13_g09214_MAGBIO Magnolia biondii HOM05D007266 ORTHO05D005982 4.9e-20 103.2 334 31.1
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 6.4e-20 102.8 324 27.8
Lalb_Chr01g0007421 Lupinus albus HOM05D007266 ORTHO05D005982 8.3e-20 102.4 126 46.8
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 1.1e-19 102.1 219 32.9
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 1.4e-19 101.7 326 30.4
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 1.9e-19 101.3 323 30.3
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 2.4e-19 100.9 166 39.8
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 4.1e-19 100.1 350 29.7
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 5.4e-19 99.8 329 28.0
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 5.4e-19 99.8 329 28.0
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 5.4e-19 99.8 329 28.0
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 2.7e-18 97.4 329 28.6
ECA248G2125 Erigeron canadensis HOM05D007266 ORTHO05D005982 2.7e-18 97.4 261 29.5
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 7.8e-18 95.9 329 28.3
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 1.0e-17 95.5 332 28.0
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 1.3e-17 95.1 328 28.7
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 1.1e-16 92.0 258 31.8
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 1.9e-16 91.3 332 27.4
PSO135G0681 Papaver somniferum HOM05D007266 ORTHO05D005982 4.3e-16 90.1 186 38.7
PSO384G1467 Papaver somniferum HOM05D007266 ORTHO05D005982 4.3e-16 90.1 186 38.2
Sc11g0006320 Simmondsia chinensis HOM05D007266 ORTHO05D005982 1.6e-15 88.2 217 33.2
AT5G06980 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 2.3e-14 84.3 269 30.5
TAR623G0806 Trochodendron aralioides HOM05D007266 ORTHO05D005982 3.1e-14 84.0 163 38.0
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 5.2e-14 83.2 332 27.4
Peaxi162Scf00220g00314 Petunia axillaris HOM05D007266 ORTHO05D005982 5.8e-13 79.7 197 30.5
TAR623G0101 Trochodendron aralioides HOM05D007266 ORTHO05D005982 1.3e-12 78.6 133 39.1
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 1.7e-12 78.2 212 29.7
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 2.2e-12 77.8 257 29.6
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 2.2e-12 77.8 99 47.5
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 2.4e-11 74.3 104 48.1
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 1.7e-09 68.2 119 39.5
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 3.0e-09 67.4 99 41.4
CSS0012064 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 5.1e-09 66.6 155 31.0
Duzib052G1087 Durio zibethinus HOM05D003662 ORTHO05D001824 5.1e-09 66.6 177 28.8
SHI11361 Sapria himalayana HOM05D000436 ORTHO05D000678 6.6e-09 66.2 327 25.1
Gorai.012G141800 Gossypium raimondii HOM05D003662 ORTHO05D001824 8.6e-09 65.9 140 30.7
Gohir.D04G154500 Gossypium hirsutum HOM05D003662 ORTHO05D001824 1.1e-08 65.5 140 30.7
Hund00056 Selenicereus undatus HOM05D003662 ORTHO05D001824 1.1e-08 65.5 281 25.3
Solyc01g096620.4 Solanum lycopersicum HOM05D007266 ORTHO05D005982 1.5e-08 65.1 195 26.7
Duzib248G0964 Durio zibethinus HOM05D003662 ORTHO05D001824 1.9e-08 64.7 147 32.0
Thecc.02G139400 Theobroma cacao HOM05D003662 ORTHO05D001824 2.5e-08 64.3 192 27.6
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 4.3e-08 63.5 95 42.1
Gohir.A04G113200 Gossypium hirsutum HOM05D003662 ORTHO05D001824 5.6e-08 63.2 121 31.4
Gohir.D13G054800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 9.5e-08 62.4 177 28.2
Gorai.013G061600 Gossypium raimondii HOM05D003662 ORTHO05D001824 9.5e-08 62.4 177 28.2
CiPaw.05G036400 Carya illinoinensis HOM05D003662 ORTHO05D001824 1.6e-07 61.6 149 30.9
Oeu026157.1 Olea europaea HOM05D003662 ORTHO05D001824 1.6e-07 61.6 100 37.0
Oeu011776.1 Olea europaea HOM05D003662 ORTHO05D001824 2.1e-07 61.2 223 25.1
Ciclev10027956m.g Citrus clementina HOM05D003662 ORTHO05D001824 3.6e-07 60.5 151 30.5
Actinidia01518 Actinidia chinensis HOM05D007266 ORTHO05D005982 4.7e-07 60.1 86 37.2
Cc02_g21620 Coffea canephora HOM05D003662 ORTHO05D001824 4.7e-07 60.1 116 34.5
Glyma.08G179400 Glycine max HOM05D003662 ORTHO05D001824 4.7e-07 60.1 152 30.9
Gohir.A13G066800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 4.7e-07 60.1 211 26.1
EL10Ac2g02826 Beta vulgaris HOM05D004414 ORTHO05D001824 1.1e-06 58.9 92 37.0
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 1.1e-06 58.9 99 37.4
Hund06389 Selenicereus undatus HOM05D003662 ORTHO05D001824 1.1e-06 58.9 122 32.0
AagrBONN_evm.TU.Sc2ySwM_344.4535 Anthoceros agrestis HOM05D004414 ORTHO05D001824 1.8e-06 58.2 136 33.8
CDE03G0404 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 1.8e-06 58.2 134 29.1
TWI23G0811 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 1.8e-06 58.2 108 32.4
TAR623G0335 Trochodendron aralioides HOM05D007266 ORTHO05D005982 1.8e-06 58.2 98 42.9
Aa31sc25G30 Aethionema arabicum HOM05D008873 ORTHO05D005982 2.4e-06 57.8 109 33.9
Phvul.006G206900 Phaseolus vulgaris HOM05D003662 ORTHO05D001824 2.4e-06 57.8 108 33.3
DCAR_001790 Daucus carota HOM05D003662 ORTHO05D001824 3.1e-06 57.4 101 35.6
Duzib132G0110 Durio zibethinus HOM05D003662 ORTHO05D001824 3.1e-06 57.4 146 30.8
Nn1g05340 Nelumbo nucifera HOM05D003662 ORTHO05D001824 3.1e-06 57.4 141 31.9
Oeu007958.1 Olea europaea HOM05D003662 ORTHO05D001824 4.0e-06 57.0 121 31.4
TAR376G0165 Trochodendron aralioides HOM05D003662 ORTHO05D001824 4.0e-06 57.0 109 33.0
ATR0753G089 Amborella trichopoda HOM05D003662 ORTHO05D001824 5.2e-06 56.6 183 31.1
DCAR_021854 Daucus carota HOM05D003662 ORTHO05D001824 5.2e-06 56.6 113 32.7
Dinv09038 Davidia involucrata HOM05D003662 ORTHO05D001824 5.2e-06 56.6 152 29.6
CSS0002395 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 6.8e-06 56.2 131 32.1
AUR62010118 Chenopodium quinoa HOM05D003662 ORTHO05D001824 6.8e-06 56.2 120 32.5
MELO3C019019.2 Cucumis melo HOM05D003662 ORTHO05D001824 6.8e-06 56.2 91 37.4
Glyma.08G073300 Glycine max HOM05D003662 ORTHO05D001824 6.8e-06 56.2 110 35.5
Prupe.8G062200 Prunus persica HOM05D003662 ORTHO05D001824 6.8e-06 56.2 140 30.7
SGA_v2.0_scaffold83G26297 Striga asiatica HOM05D003662 ORTHO05D001824 6.8e-06 56.2 106 35.8
Aa31LG1G17760 Aethionema arabicum HOM05D003662 ORTHO05D001824 8.9e-06 55.8 239 24.3
CDE12G0772 Ceratophyllum demersum HOM05D003662 ORTHO05D001824 8.9e-06 55.8 132 34.1
ECA234G0654 Erigeron canadensis HOM05D000867 ORTHO05D000864 8.9e-06 55.8 100 32.0


User provided reference genes

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