Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 0.0e+00 1148.3 567 100.0
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 2.9e-281 971.5 575 82.4
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 4.7e-276 954.1 606 78.5
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 2.3e-275 951.8 588 79.3
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 9.2e-264 913.3 579 76.3
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 5.3e-259 897.5 571 76.9
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 7.6e-258 893.6 568 77.5
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 8.4e-257 890.2 542 78.0
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 2.0e-250 869.0 579 72.9
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 2.0e-250 869.0 540 76.9
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 1.3e-249 866.3 579 72.2
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 2.9e-249 865.1 572 74.0
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 6.0e-247 857.4 573 72.6
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 1.8e-246 855.9 579 71.7
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 2.5e-245 852.0 532 76.3
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 1.3e-244 849.7 537 75.2
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 2.1e-244 849.0 570 70.4
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 3.7e-244 848.2 536 75.9
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 1.8e-243 845.9 578 71.3
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 2.0e-242 842.4 579 71.7
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 9.9e-242 840.1 581 71.6
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 1.7e-241 839.3 580 70.5
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 1.1e-240 836.6 579 71.2
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 1.4e-240 836.3 578 70.2
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 1.2e-239 833.2 548 73.0
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 1.6e-239 832.8 538 73.2
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 3.9e-238 828.2 572 70.8
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 2.5e-237 825.5 538 72.3
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 4.3e-237 824.7 581 69.5
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 5.6e-237 824.3 565 70.3
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 9.6e-237 823.5 541 71.3
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 1.3e-236 823.2 542 71.8
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 2.1e-236 822.4 573 69.5
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 9.0e-235 817.0 570 69.1
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 2.0e-234 815.8 545 70.8
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 7.6e-234 813.9 579 68.2
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 2.5e-232 808.9 539 71.1
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 2.5e-232 808.9 544 70.8
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 2.5e-232 808.9 535 71.4
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 4.2e-232 808.1 576 67.9
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 2.1e-231 805.8 567 69.1
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 1.8e-230 802.7 536 70.0
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 3.0e-230 802.0 549 69.8
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 5.1e-230 801.2 554 68.8
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 8.7e-230 800.4 537 70.6
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 2.8e-228 795.4 534 70.8
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 2.8e-228 795.4 579 68.2
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 4.1e-227 791.6 556 68.0
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 3.4e-226 788.5 571 68.0
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 4.5e-226 788.1 570 69.1
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 1.9e-224 782.7 577 65.3
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 4.2e-224 781.6 599 63.9
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 4.2e-224 781.6 577 65.7
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 2.7e-223 778.9 578 65.4
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 7.9e-223 777.3 514 71.0
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 1.4e-222 776.5 550 68.2
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 1.8e-222 776.2 577 64.5
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 2.3e-222 775.8 577 64.8
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 1.5e-221 773.1 577 65.2
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 2.5e-221 772.3 577 64.1
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 2.5e-221 772.3 577 64.5
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 2.8e-220 768.8 569 65.0
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 6.3e-220 767.7 561 65.4
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 4.1e-219 765.0 595 62.5
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 2.0e-218 762.7 583 63.8
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 1.1e-216 756.9 579 64.9
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 1.2e-215 753.4 463 77.3
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 8.8e-214 747.3 575 63.3
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 3.3e-213 745.3 543 65.4
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 1.4e-211 740.0 650 57.2
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 6.1e-207 724.5 537 63.5
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 6.7e-206 721.1 458 73.8
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 1.7e-204 716.5 488 69.7
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 2.8e-204 715.7 571 60.4
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 5.9e-202 708.0 457 72.9
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 1.3e-196 690.3 462 70.1
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 4.8e-196 688.3 536 61.4
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 2.2e-193 679.5 458 70.3
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 1.2e-191 673.7 587 58.9
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 2.7e-191 672.5 463 70.8
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 1.0e-190 670.6 401 80.5
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 8.3e-188 661.0 431 71.9
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 6.6e-185 651.4 542 61.8
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 7.5e-181 637.9 533 61.0
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 2.2e-180 636.3 465 66.9
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 3.2e-179 632.5 549 58.8
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 1.0e-174 617.5 511 61.6
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 2.2e-164 583.2 351 79.2
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 3.3e-160 569.3 558 50.7
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 7.6e-157 558.1 534 51.1
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 8.1e-151 538.1 530 49.6
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.6e-146 523.9 395 64.3
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 2.1e-146 523.5 508 53.3
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 2.4e-142 510.0 572 46.5
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 2.2e-140 503.4 319 73.0
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 3.1e-134 483.0 540 49.4
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 9.0e-126 454.9 296 71.3
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 8.4e-124 448.4 355 60.6
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 2.0e-117 427.2 267 76.0
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 2.1e-114 417.2 693 39.4
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 2.4e-110 403.7 271 72.0
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.0e-108 398.3 274 67.9
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 2.3e-105 387.1 239 75.7
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 9.7e-96 355.1 534 41.0
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 1.4e-94 351.3 569 39.9
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 1.9e-91 340.9 249 64.7
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 3.6e-74 283.5 184 70.7
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 2.3e-73 280.8 470 36.2
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.8e-70 271.2 187 69.5
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 7.0e-70 269.2 518 36.1
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 5.6e-59 233.0 140 76.4
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 8.0e-58 229.2 124 87.1
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.0e-57 228.8 610 28.9
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.9e-54 218.0 519 30.8
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 4.7e-50 203.4 397 35.8
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 3.6e-34 150.6 97 71.1
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 1.6e-26 125.2 101 57.4
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 2.1e-26 124.8 84 67.9
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 1.1e-25 122.5 499 27.1
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.7e-23 115.2 83 65.1
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 2.9e-23 114.4 108 57.4
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 3.0e-20 104.4 118 46.6
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 4.8e-18 97.1 105 44.8
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 4.8e-18 97.1 110 44.5
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.1e-17 94.4 115 43.5
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 5.3e-17 93.6 56 69.6
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 5.3e-17 93.6 56 73.2
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 9.0e-17 92.8 114 43.0
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 1.2e-16 92.4 74 62.2
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.5e-16 92.0 118 42.4
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 9.6e-11 72.8 55 61.8
Haze_01792 Corylus avellana HOM05D000242 ORTHO05D000700 5.8e-08 63.5 35 80.0
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 5.8e-08 63.5 46 67.4
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 2.2e-07 61.6 38 71.1
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 2.2e-07 61.6 38 71.1
BolC8t50740H Brassica oleracea HOM05D035890 ORTHO05D033370 8.4e-07 59.7 42 66.7


User provided reference genes

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