Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1257.7 637 100.0
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1204.1 636 94.0
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1198.3 637 93.7
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1198.0 637 93.4
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1196.4 637 93.6
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1192.9 637 92.6
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1191.4 637 93.1
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1189.5 636 92.5
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1188.3 637 92.8
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1187.9 647 91.5
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1187.9 635 92.4
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1187.2 633 93.2
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1186.4 637 92.2
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1185.2 637 92.3
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1184.9 637 91.2
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1184.9 637 91.5
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1183.7 637 91.8
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1181.8 637 91.4
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1181.8 637 91.1
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1180.6 637 91.5
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1178.7 635 91.8
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1178.3 637 91.2
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1177.9 637 91.4
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1177.9 637 91.8
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1176.4 637 91.5
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1175.2 631 91.9
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1174.8 637 90.9
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1174.1 636 91.7
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1173.7 637 90.7
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1173.3 633 91.3
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1173.3 637 90.6
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1172.9 634 91.5
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1171.8 636 91.2
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1171.0 633 91.5
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1171.0 637 90.6
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1169.8 631 91.6
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1169.8 637 90.3
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1169.5 637 90.9
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1169.5 634 91.0
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1169.1 637 90.4
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1165.2 633 90.8
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1165.2 636 90.6
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1164.4 634 90.9
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1163.3 631 91.3
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1162.9 636 89.8
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1162.9 633 90.5
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1162.9 637 90.0
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1162.5 637 90.9
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1161.4 637 89.5
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1160.6 637 89.5
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1157.1 637 89.6
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1157.1 635 89.8
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1156.7 633 89.6
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1156.4 633 89.7
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1156.4 633 89.6
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1155.2 633 89.4
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 636 88.7
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 637 89.0
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1153.7 637 89.3
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1153.3 637 89.3
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1152.5 633 89.3
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1152.5 637 88.7
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1151.3 637 88.4
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1151.0 636 88.2
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1149.8 628 90.3
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1147.1 635 88.0
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 634 87.7
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 637 89.8
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 637 89.2
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 637 88.1
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1143.3 630 88.7
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 637 88.1
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 631 89.1
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1141.3 664 85.5
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1140.6 637 87.9
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1139.4 632 89.7
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 637 87.9
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 637 87.9
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 637 87.9
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1137.5 636 88.2
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1137.5 637 87.9
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1137.1 632 88.8
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1135.9 637 87.8
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1130.9 637 87.0
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1130.5 637 87.1
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1130.5 630 88.3
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1129.4 637 86.8
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1125.9 632 86.9
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1125.5 637 86.7
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1125.5 633 87.7
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 632 86.7
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1122.5 630 87.5
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1120.9 637 86.3
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1118.6 634 86.4
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1115.9 634 86.1
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1113.2 636 86.2
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1102.0 647 85.6
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1098.2 637 85.1
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1087.0 628 84.7
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1085.9 628 84.9
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 4.4e-312 1073.5 628 83.6
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 6.5e-311 1070.1 582 90.2
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 3.0e-303 1044.6 631 81.1
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 1.8e-292 1008.8 632 78.2
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 2.0e-291 1005.4 544 91.9
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 4.1e-284 981.1 534 90.3
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 2.9e-282 974.9 534 89.1
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 1.0e-271 939.9 649 73.7
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 4.8e-269 931.0 635 74.5
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 5.3e-268 927.5 629 74.1
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 3.5e-267 924.9 499 91.6
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 1.8e-260 902.5 649 71.0
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 5.3e-252 874.4 634 73.2
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 7.7e-251 870.5 503 87.1
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 2.5e-249 865.5 503 86.5
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 4.5e-243 844.7 636 71.1
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 7.8e-235 817.4 497 81.9
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 7.8e-235 817.4 638 65.7
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 3.3e-225 785.4 638 62.1
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 1.4e-204 716.8 444 80.9
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.2e-195 687.2 533 68.3
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 3.4e-182 642.5 643 52.9
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.6e-179 633.6 446 74.2
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 5.7e-177 625.2 354 87.3
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 5.1e-170 602.1 411 75.7
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 4.2e-164 582.4 315 91.4
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 1.3e-152 544.3 296 90.5
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 1.2e-139 501.1 278 89.6
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 1.2e-113 414.8 527 43.6
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 7.8e-102 375.6 201 91.5
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 3.0e-93 347.1 240 72.9
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.4e-87 328.2 184 87.5
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 1.6e-86 324.7 231 72.3
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 2.1e-78 297.7 163 87.1
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 8.7e-77 292.4 637 34.5
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 9.6e-76 288.9 163 86.5
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 3.7e-59 233.8 273 50.2
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 8.4e-56 222.6 230 57.8
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 7.2e-47 193.0 104 91.3
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 2.2e-43 181.4 104 84.6
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 3.8e-40 170.6 104 77.9
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 3.8e-40 170.6 160 61.2
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 8.5e-40 169.5 99 83.8
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 3.0e-37 161.0 90 86.7
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.6e-36 157.9 86 82.6
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 2.2e-35 154.8 172 53.5
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 3.7e-35 154.1 147 57.1
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 2.4e-34 151.4 91 81.3
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 6.5e-32 143.3 77 83.1
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 4.0e-21 107.5 116 51.7
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 2.6e-20 104.8 53 94.3
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 5.4e-18 97.1 70 67.1
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 5.4e-18 97.1 60 80.0
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 7.7e-17 93.2 63 66.7
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 1.7e-16 92.0 51 84.3
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.7e-16 92.0 49 87.8
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 1.4e-13 82.4 56 67.9
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 2.7e-09 68.2 43 74.4


User provided reference genes

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