Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 0.0e+00 1289.2 670 100.0
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 1.8e-290 1002.3 664 78.8
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 2.5e-284 981.9 655 78.2
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 3.1e-282 974.9 661 76.7
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 4.4e-281 971.1 656 77.0
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 7.5e-281 970.3 661 77.0
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 3.5e-278 961.4 655 76.8
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 3.5e-278 961.4 655 77.6
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 1.0e-277 959.9 656 76.5
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.0e-277 959.9 660 76.1
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 3.3e-276 954.9 656 76.1
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 9.5e-276 953.4 665 74.6
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 3.1e-274 948.3 669 74.1
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 1.2e-273 946.4 655 75.6
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 3.4e-273 944.9 657 76.9
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 9.9e-273 943.3 659 74.5
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 2.2e-272 942.2 655 75.4
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 8.3e-272 940.3 657 75.5
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 7.1e-271 937.2 729 71.6
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 2.1e-270 935.6 648 75.9
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 6.0e-270 934.1 657 74.7
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 2.5e-268 928.7 655 73.6
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 9.6e-268 926.8 674 71.4
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 9.6e-268 926.8 674 71.5
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 3.1e-266 921.8 658 73.1
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 3.1e-266 921.8 655 72.8
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 4.0e-266 921.4 655 74.0
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 5.8e-265 917.5 664 71.7
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 1.3e-264 916.4 661 72.6
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 1.2e-262 909.8 655 72.1
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 2.1e-262 909.1 655 72.2
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 2.7e-262 908.7 654 74.0
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 3.5e-262 908.3 669 71.2
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 6.0e-262 907.5 655 72.2
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 1.0e-261 906.7 655 70.8
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 1.3e-261 906.4 656 73.8
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 2.3e-261 905.6 655 72.1
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 3.0e-261 905.2 658 70.7
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 3.0e-261 905.2 663 70.6
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 1.1e-260 903.3 667 71.1
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 1.9e-260 902.5 668 70.1
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 7.3e-260 900.6 655 71.0
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 1.6e-259 899.4 668 69.3
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 1.6e-259 899.4 673 70.6
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 2.8e-259 898.7 655 71.3
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 3.6e-259 898.3 691 68.7
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 6.2e-259 897.5 667 70.8
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 2.4e-258 895.6 655 70.8
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 3.1e-258 895.2 654 71.1
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 4.0e-258 894.8 654 71.3
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 1.2e-257 893.3 655 70.7
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 9.9e-257 890.2 694 68.7
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 4.9e-256 887.9 656 71.2
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 6.4e-256 887.5 694 68.3
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 5.4e-255 884.4 657 72.3
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 7.1e-255 884.0 660 69.7
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 9.3e-255 883.6 663 69.5
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 1.2e-254 883.2 655 70.7
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 7.8e-254 880.6 670 69.7
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 1.3e-253 879.8 664 69.4
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 6.6e-253 877.5 659 70.3
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 8.7e-253 877.1 659 70.6
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 5.6e-252 874.4 656 69.8
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.6e-251 872.8 664 69.3
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 1.4e-250 869.8 594 76.8
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 4.0e-250 868.2 654 70.2
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 5.3e-250 867.8 659 69.3
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 1.5e-249 866.3 654 69.0
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 7.6e-249 864.0 661 69.6
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 8.4e-248 860.5 663 67.7
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 3.5e-246 855.1 667 68.4
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 4.3e-244 848.2 616 72.4
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 3.7e-243 845.1 660 65.8
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 4.8e-243 844.7 689 66.6
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 3.1e-242 842.0 611 71.7
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 2.0e-241 839.3 593 74.4
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 1.3e-240 836.6 604 72.0
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 2.2e-240 835.9 663 66.4
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 3.5e-238 828.6 669 67.9
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 5.1e-237 824.7 655 67.0
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 3.1e-234 815.5 644 68.0
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 5.5e-231 804.7 655 67.5
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 8.7e-229 797.3 595 70.6
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 6.9e-226 787.7 847 55.7
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 3.1e-218 762.3 866 52.5
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 5.9e-217 758.1 650 61.7
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 7.7e-217 757.7 655 63.8
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 2.2e-216 756.1 663 60.6
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.5e-209 733.4 686 58.6
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 8.5e-200 701.0 658 56.7
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 1.7e-195 686.8 517 69.6
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 7.5e-188 661.4 568 63.2
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 4.9e-187 658.7 477 73.0
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 3.8e-184 649.0 666 54.4
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 5.0e-184 648.7 476 72.7
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 2.7e-169 599.7 495 66.9
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 8.6e-168 594.7 605 57.0
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 2.3e-165 586.6 580 55.5
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.1e-146 524.6 436 62.8
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 1.5e-135 487.6 438 61.6
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 6.7e-112 409.1 459 50.5
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.9e-107 393.7 345 59.7
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 9.4e-82 308.9 413 44.1
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 4.0e-80 303.5 237 62.4
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 2.4e-77 294.3 203 76.4
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 7.0e-77 292.7 199 75.9
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 5.9e-76 289.7 438 42.0
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.7e-67 261.5 175 74.9
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 5.6e-66 256.5 285 55.4
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 3.5e-60 237.3 246 58.9
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 4.6e-60 236.9 376 40.4
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 4.6e-60 236.9 168 69.0
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 4.6e-52 210.3 137 76.6
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-41 174.5 441 32.7
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 5.2e-40 170.2 168 57.7
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 5.4e-37 160.2 110 73.6
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 9.2e-37 159.5 145 62.1
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 3.9e-35 154.1 136 57.4
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 6.9e-32 143.3 90 75.6
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 1.3e-30 139.0 94 75.5
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 1.7e-30 138.7 79 84.8
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 2.2e-30 138.3 88 76.1
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 2.7e-28 131.3 89 70.8
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 7.8e-28 129.8 92 67.4
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 3.3e-26 124.4 98 61.2
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 6.2e-25 120.2 83 73.5
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 1.1e-24 119.4 433 29.6
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 3.1e-24 117.9 180 40.0
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 1.5e-23 115.5 165 41.8
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.9e-21 108.6 135 49.6
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 2.4e-21 108.2 143 49.0
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 4.6e-20 104.0 65 78.5
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 6.0e-20 103.6 90 63.3
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 9.6e-18 96.3 83 61.4
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 4.8e-17 94.0 175 36.0
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 1.5e-15 89.0 92 57.6
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 7.6e-15 86.7 50 80.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 7.6e-15 86.7 50 80.0
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 9.9e-15 86.3 67 62.7
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 1.7e-14 85.5 50 80.0
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 3.2e-13 81.3 61 67.2
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-11 76.3 58 62.1
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 9.6e-10 69.7 62 48.4
TWI56G1164 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 2.6e-07 61.6 49 61.2
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 3.4e-07 61.2 75 54.7


User provided reference genes

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