Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 0.0e+00 1738.0 862 100.0
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 0.0e+00 1305.0 866 76.6
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 0.0e+00 1304.7 866 76.2
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 0.0e+00 1302.3 849 79.5
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 0.0e+00 1268.4 738 85.9
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 0.0e+00 1182.5 864 70.6
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 1.0e-282 976.9 868 59.1
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 3.0e-282 975.3 869 60.3
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 7.2e-276 954.1 869 59.5
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 7.9e-275 950.7 868 57.8
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.5e-273 946.4 870 57.4
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 2.6e-273 945.7 866 57.5
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 3.7e-272 941.8 869 58.5
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 6.3e-272 941.0 865 57.5
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 3.1e-271 938.7 869 57.3
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 5.3e-271 937.9 870 58.2
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 2.0e-270 936.0 865 58.3
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 5.9e-270 934.5 869 57.0
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.2e-269 932.6 869 57.5
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 6.5e-269 931.0 890 55.8
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 1.1e-268 930.2 865 57.1
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 4.2e-268 928.3 872 57.3
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 6.7e-266 921.0 866 56.8
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 4.4e-265 918.3 877 56.6
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.4e-263 913.3 865 58.5
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.4e-263 912.5 872 56.8
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 5.3e-263 911.4 885 56.0
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.9e-261 905.6 871 56.6
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 7.2e-260 901.0 865 56.0
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 1.3e-256 890.2 816 59.9
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 8.3e-256 887.5 879 54.8
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 2.4e-255 885.9 890 55.2
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 1.3e-253 880.2 888 55.2
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 1.3e-245 853.6 891 54.0
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 1.5e-244 850.1 871 54.4
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 1.5e-244 850.1 871 54.4
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 2.5e-244 849.4 890 53.9
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 7.3e-244 847.8 879 53.0
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 7.3e-244 847.8 872 52.9
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.2e-243 847.0 868 54.1
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.8e-243 845.9 544 80.1
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 3.6e-243 845.5 871 54.5
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.2e-238 830.5 891 52.6
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 1.7e-237 826.6 891 53.1
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.5e-236 823.5 891 52.2
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 7.3e-236 821.2 880 53.1
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 1.6e-235 820.1 897 51.7
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.4e-233 812.4 914 49.9
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 6.4e-232 808.1 871 50.6
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 1.9e-231 806.6 851 50.2
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 1.5e-228 797.0 859 51.1
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 7.3e-228 794.7 731 56.8
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 1.8e-226 790.0 856 51.2
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 2.6e-225 786.2 879 51.5
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 5.8e-225 785.0 860 51.0
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 1.7e-224 783.5 873 51.2
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 3.7e-224 782.3 886 50.5
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.4e-223 780.4 899 49.3
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 7.8e-222 774.6 854 49.9
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 2.3e-221 773.1 869 49.7
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 8.6e-221 771.2 899 48.8
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.9e-220 770.0 868 49.8
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 1.9e-220 770.0 864 50.0
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.1e-218 764.2 898 48.4
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 1.8e-218 763.5 751 54.5
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 2.0e-217 760.0 856 49.3
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 2.0e-217 760.0 866 48.8
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 5.8e-217 758.4 925 48.6
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 1.7e-216 756.9 852 48.7
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 2.9e-216 756.1 867 49.4
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 7.1e-215 751.5 867 48.9
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 4.6e-214 748.8 812 52.0
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 1.5e-212 743.8 849 48.2
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 5.6e-212 741.9 858 48.4
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.6e-211 740.3 849 48.5
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 2.1e-211 740.0 933 48.1
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 4.7e-211 738.8 846 48.7
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 2.4e-210 736.5 870 47.7
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 4.0e-210 735.7 870 48.4
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 6.9e-210 734.9 868 47.7
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 3.4e-209 732.6 871 48.1
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 7.6e-209 731.5 871 48.9
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 7.6e-209 731.5 871 48.9
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 1.1e-207 727.6 863 46.7
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.4e-207 726.5 963 46.4
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 5.4e-207 725.3 872 47.6
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 1.0e-205 721.1 873 48.2
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 5.1e-205 718.8 847 48.3
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 2.5e-204 716.5 784 48.7
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 4.0e-202 709.1 848 46.3
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 1.2e-201 707.6 848 46.8
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 1.4e-199 700.7 846 46.5
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 1.2e-198 697.6 875 45.1
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 1.9e-196 690.3 856 45.3
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 1.9e-196 690.3 856 45.3
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 1.1e-194 684.5 884 44.5
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 2.0e-193 680.2 867 47.5
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 3.8e-192 676.0 632 58.1
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 4.9e-192 675.6 616 57.0
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 5.5e-191 672.2 902 44.2
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 1.2e-190 671.0 870 44.8
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 8.2e-187 658.3 680 54.3
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 2.7e-182 643.3 734 48.9
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 3.3e-180 636.3 855 44.0
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 8.2e-179 631.7 807 45.0
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.5e-177 627.5 620 53.1
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 6.5e-176 622.1 861 42.0
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 8.2e-163 578.6 877 41.2
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.9e-160 570.1 569 54.5
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 5.0e-160 569.3 704 46.2
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 6.5e-160 568.9 667 49.0
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 7.2e-151 538.9 869 41.2
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 5.7e-140 502.7 504 56.2
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 2.2e-139 500.7 693 41.4
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 8.3e-139 498.8 630 44.6
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 3.3e-135 486.9 559 49.4
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 1.2e-116 425.2 573 45.9
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 1.6e-113 414.8 372 56.7
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 8.1e-110 402.5 649 39.0
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 3.9e-96 357.1 550 39.3
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 7.3e-95 352.8 966 29.7
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 2.6e-92 344.4 355 53.2
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.3e-91 342.0 496 41.3
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 8.4e-91 339.3 650 37.2
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.0e-88 332.4 224 78.6
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 3.9e-88 330.5 340 55.6
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 2.7e-81 307.8 533 37.3
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 1.8e-77 295.0 476 41.0
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 6.9e-77 293.1 1072 26.2
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 3.0e-72 277.7 330 50.3
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 4.3e-71 273.9 645 29.9
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.4e-69 268.9 225 62.7
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 6.9e-61 240.0 188 66.0
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 2.1e-57 228.4 254 50.8
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 2.0e-55 221.9 184 62.5
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 1.1e-53 216.1 180 63.3
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 4.1e-53 214.2 304 45.1
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 1.1e-50 206.1 178 59.6
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 1.6e-49 202.2 200 58.5
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 3.0e-48 198.0 466 31.5
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.0e-47 195.3 174 59.2
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 2.3e-40 171.8 194 49.0
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 4.4e-39 167.5 163 54.0
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 3.7e-38 164.5 163 54.0
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 1.1e-37 162.9 195 46.7
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 3.1e-37 161.4 1052 22.1
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.6e-36 159.1 147 57.8
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 1.3e-35 156.0 117 65.0
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 1.3e-35 156.0 116 65.5
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 2.9e-35 154.8 124 52.4
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 8.5e-35 153.3 116 63.8
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 3.2e-34 151.4 153 52.9
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 3.6e-33 147.9 148 55.4
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 8.0e-33 146.7 153 52.3
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 8.0e-33 146.7 153 52.3
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 1.4e-32 146.0 121 64.5
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 2.3e-32 145.2 284 35.6
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 5.7e-31 140.6 98 72.4
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 8.3e-30 136.7 96 70.8
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.8e-27 127.9 89 73.0
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 8.5e-27 126.7 252 34.1
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.5e-26 125.2 99 61.6
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 7.5e-23 113.6 247 27.9
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 4.8e-22 110.9 160 43.8
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 1.0e-19 103.2 80 61.2
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 1.9e-18 99.0 306 26.5
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 9.5e-18 96.7 202 35.6
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 2.0e-15 89.0 118 44.9
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 2.8e-14 85.1 71 66.2
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 5.4e-13 80.9 78 57.7
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 7.0e-13 80.5 62 71.0
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.5e-12 78.2 63 60.3
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 5.0e-11 74.3 238 27.3
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.5e-10 72.8 49 65.3
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.0e-08 66.6 82 48.8
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.0e-08 66.6 51 68.6
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.4e-08 66.2 56 58.9
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 2.3e-08 65.5 150 32.0
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 1.3e-06 59.7 87 48.3
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 1.3e-06 59.7 145 31.0


User provided reference genes

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