Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G094000 Carya illinoinensis HOM05D007750 ORTHO05D009803 1.8e-110 404.1 205 100.0
Haze_24099 Corylus avellana HOM05D007750 ORTHO05D009803 9.0e-86 322.0 205 79.0
Cfa011507 Carpinus fangiana HOM05D007750 ORTHO05D009803 1.2e-82 311.6 205 76.6
QL01p031803 Quercus lobata HOM05D007750 ORTHO05D009803 6.3e-79 299.3 205 74.6
Prupe.6G076800 Prunus persica HOM05D007750 ORTHO05D009803 3.8e-68 263.5 204 65.7
GSVIVG01024955001 Vitis vinifera HOM05D007750 ORTHO05D009803 1.9e-67 261.2 204 65.2
RcHm_v2.0_Chr5g0064911 Rosa chinensis HOM05D007750 ORTHO05D009803 2.7e-66 257.3 205 63.9
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 8.0e-66 255.8 205 64.9
CSS0037746 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 3.0e-65 253.8 205 62.0
Manes.02G132900 Manihot esculenta HOM05D007750 ORTHO05D009803 3.0e-65 253.8 199 65.3
Gohir.A03G042099 Gossypium hirsutum HOM05D007750 ORTHO05D009803 2.0e-64 251.1 200 63.0
Gorai.003G131800 Gossypium raimondii HOM05D007750 ORTHO05D009803 2.0e-64 251.1 200 63.0
CANSAT54G1947 Cannabis sativa HOM05D007750 ORTHO05D009803 9.7e-64 248.8 205 62.4
Gohir.D03G125600 Gossypium hirsutum HOM05D007750 ORTHO05D009803 9.7e-64 248.8 200 62.5
RcHm_v2.0_Chr5g0064671 Rosa chinensis HOM05D007750 ORTHO05D009803 1.4e-62 245.0 192 64.6
MD03G1092900 Malus domestica HOM05D007750 ORTHO05D009803 7.0e-62 242.7 205 58.5
Cpa.g.sc81.142 Carica papaya HOM05D007750 ORTHO05D009803 2.6e-61 240.7 193 64.8
FvH4_3g36170 Fragaria vesca HOM05D007750 ORTHO05D009803 5.9e-61 239.6 204 59.3
Duzib150G0757 Durio zibethinus HOM05D007750 ORTHO05D009803 8.5e-60 235.7 206 59.2
Atru.chr3.3911 Acer truncatum HOM05D007750 ORTHO05D009803 1.5e-59 235.0 203 60.6
Lj2g0016115 Lotus japonicus HOM05D007750 ORTHO05D009803 1.2e-58 231.9 205 56.1
FAN16G0393 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.6e-58 231.5 192 60.9
TPR.G7494 Trifolium pratense HOM05D007750 ORTHO05D009803 2.7e-58 230.7 205 59.5
FAN25G2068 Fragaria x ananassa HOM05D007750 ORTHO05D009803 3.6e-58 230.3 192 60.4
Nn1g04208 Nelumbo nucifera HOM05D007750 ORTHO05D009803 1.0e-57 228.8 206 57.8
Thecc.09G321000 Theobroma cacao HOM05D007750 ORTHO05D009803 1.8e-57 228.0 193 61.1
FAN11G0214 Fragaria x ananassa HOM05D007750 ORTHO05D009803 4.0e-57 226.9 192 59.9
FAN21G3841 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.5e-56 224.9 192 59.4
Phvul.003G092000 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 2.6e-56 224.2 200 59.0
Ca_04398_v3 Cicer arietinum L. HOM05D007750 ORTHO05D009803 3.4e-56 223.8 205 57.1
arahy.Tifrunner.gnm1.ann1.T5BWJF Arachis hypogaea HOM05D007750 ORTHO05D009803 4.4e-56 223.4 198 61.1
Phvul.003G091900 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 9.8e-56 222.2 206 57.8
CSS0028051 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 2.2e-55 221.1 193 58.5
Psat1g083360 Pisum sativum HOM05D007750 ORTHO05D009803 2.8e-55 220.7 205 57.6
Thhalv10028537m.g Eutrema salsugineum HOM05D007750 ORTHO05D009803 1.1e-54 218.8 203 55.2
Aqoxy496s001 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 9.1e-54 215.7 206 57.3
Aqoxy4G02931 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 9.1e-54 215.7 206 57.3
arahy.Tifrunner.gnm1.ann1.7C1NTJ Arachis hypogaea HOM05D007750 ORTHO05D009803 9.1e-54 215.7 191 61.3
Lalb_Chr12g0196171 Lupinus albus HOM05D007750 ORTHO05D009803 4.5e-53 213.4 204 56.4
CAN.G981.43 Capsicum annuum HOM05D007750 ORTHO05D009803 5.9e-53 213.0 198 57.1
Medtr6g022260 Medicago truncatula HOM05D007750 ORTHO05D009803 1.0e-52 212.2 204 54.9
Glyma.07G217200 Glycine max HOM05D007750 ORTHO05D009803 1.3e-52 211.8 205 56.6
VMungo1215G1573 Vigna mungo HOM05D007750 ORTHO05D009803 1.3e-52 211.8 191 59.2
BraA09t38312Z Brassica rapa HOM05D007750 ORTHO05D009803 1.7e-52 211.5 203 54.2
Sopen08g028580 Solanum pennellii HOM05D007750 ORTHO05D009803 1.7e-52 211.5 199 56.3
Aqoxy7G03815 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 3.8e-52 210.3 206 55.8
Glyma.06G033500 Glycine max HOM05D007750 ORTHO05D009803 8.5e-52 209.1 205 56.1
THA.LOC104801704 Tarenaya hassleriana HOM05D007750 ORTHO05D009803 8.5e-52 209.1 203 54.2
Aa31LG9G10670 Aethionema arabicum HOM05D007750 ORTHO05D009803 1.9e-51 208.0 202 54.0
Migut.N02392 Erythranthe guttata HOM05D007750 ORTHO05D009803 1.9e-51 208.0 202 52.0
Carub.0006s3078 Capsella rubella HOM05D007750 ORTHO05D009803 3.2e-51 207.2 203 51.2
PGSC0003DMG400022754 Solanum tuberosum HOM05D007750 ORTHO05D009803 7.2e-51 206.1 199 55.3
A09p27430 Brassica napus HOM05D007750 ORTHO05D009803 3.6e-50 203.8 203 52.2
CARHR254670 Cardamine hirsuta HOM05D007750 ORTHO05D009803 6.1e-50 203.0 203 50.7
Sp6g05780 Schrenkiella parvula HOM05D007750 ORTHO05D009803 8.0e-50 202.6 200 52.5
C09p34750 Brassica napus HOM05D007750 ORTHO05D009803 2.3e-49 201.1 203 51.7
BolC9t56321H Brassica oleracea HOM05D007750 ORTHO05D009803 2.3e-49 201.1 203 51.7
MBI14_g36920_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 6.8e-49 199.5 202 51.5
Potri.017G131600 Populus trichocarpa HOM05D007750 ORTHO05D009803 2.6e-48 197.6 200 55.0
Glyma.17G016400 Glycine max HOM05D007750 ORTHO05D009803 7.5e-48 196.1 205 53.2
SGA_v2.0_scaffold9G04983 Striga asiatica HOM05D007750 ORTHO05D009803 1.3e-47 195.3 203 50.7
SalBow3G4043 Salvia bowleyana HOM05D007750 ORTHO05D009803 2.8e-47 194.1 201 51.2
Rhsim13G0082600 Rhododendron simsii HOM05D007750 ORTHO05D009803 4.9e-47 193.4 153 61.4
Sc21g0005800 Simmondsia chinensis HOM05D007750 ORTHO05D009803 1.8e-41 174.9 201 48.8
Cc01_g12900 Coffea canephora HOM05D007750 ORTHO05D009803 6.8e-41 172.9 199 47.7
AT4G11690 Arabidopsis thaliana HOM05D007750 ORTHO05D009803 5.7e-40 169.9 204 44.6
PGR083G0657 Punica granatum HOM05D007750 ORTHO05D009803 8.6e-36 156.0 206 49.0
Actinidia07034 Actinidia chinensis HOM05D007750 ORTHO05D009803 1.1e-35 155.6 205 44.9
Glyma.07G257600 Glycine max HOM05D007750 ORTHO05D009803 1.2e-34 152.1 205 46.8
BcaB01g01674 Brassica carinata HOM05D007750 ORTHO05D009803 1.4e-33 148.7 194 42.8
COL.COLO4_18513 Corchorus olitorius HOM05D007750 ORTHO05D009803 2.3e-33 147.9 204 42.2
Sabra17G0109600 Salix brachista HOM05D007750 ORTHO05D009803 6.8e-33 146.4 109 64.2
ATR0559G149 Amborella trichopoda HOM05D007750 ORTHO05D009803 5.8e-32 143.3 200 40.0
AUR62018631 Chenopodium quinoa HOM05D007750 ORTHO05D009803 3.2e-30 137.5 173 45.7
Ciclev10030066m.g Citrus clementina HOM05D007750 ORTHO05D009803 2.3e-28 131.3 205 44.9
Lj1P153T20 Lonicera japonica HOM05D007750 ORTHO05D009803 6.6e-28 129.8 111 55.9
ClCG09G016230 Citrullus lanatus HOM05D007750 ORTHO05D009803 4.7e-26 123.6 141 48.2
AL6G46300 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 2.4e-22 111.3 85 60.0
AL6G46430 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 2.4e-22 111.3 85 60.0
Nitab4.5_0007891g0010 Nicotiana tabacum HOM05D007750 ORTHO05D009803 1.0e-20 105.9 85 56.5
CsaV3_7G007090 Cucumis sativus L. HOM05D007750 ORTHO05D009803 2.3e-20 104.8 149 43.0
Nitab4.5_0001714g0210 Nicotiana tabacum HOM05D007750 ORTHO05D009803 4.3e-19 100.5 85 55.3
Oeu012315.1 Olea europaea HOM05D007750 ORTHO05D009803 1.1e-17 95.9 85 49.4
Hma1.2p1_0418F.1_g149220 Hydrangea macrophylla HOM05D007750 ORTHO05D009803 1.2e-16 92.4 59 71.2
EL10Ac5g12003 Beta vulgaris HOM05D007750 ORTHO05D009803 1.5e-16 92.0 85 48.2
Eucgr.H02967 Eucalyptus grandis HOM05D007750 ORTHO05D009803 6.4e-15 86.7 86 47.7
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 5.2e-09 67.0 172 26.2
MBI13_g36729_MAGBIO Magnolia biondii HOM05D007551 ORTHO05D009424 8.9e-09 66.2 161 30.4
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 8.9e-09 66.2 192 27.1
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 4.4e-08 63.9 110 31.8
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 9.9e-08 62.8 145 29.0
Nitab4.5_0001568g0160 Nicotiana tabacum HOM05D001779 ORTHO05D001753 9.9e-08 62.8 97 34.0
Peaxi162Scf00403g00211 Petunia axillaris HOM05D001779 ORTHO05D001753 9.9e-08 62.8 97 33.0
Gohir.A12G200366 Gossypium hirsutum HOM05D007551 ORTHO05D009424 1.3e-07 62.4 82 37.8
Nitab4.5_0001146g0150 Nicotiana tabacum HOM05D001779 ORTHO05D001753 1.7e-07 62.0 97 33.0
Oeu014026.1 Olea europaea HOM05D000424 ORTHO05D000355 1.7e-07 62.0 119 26.1
MSTRG.20959 Avicennia marina HOM05D001779 ORTHO05D001753 2.9e-07 61.2 97 30.9
ECA236G0552 Erigeron canadensis HOM05D001779 ORTHO05D001753 3.8e-07 60.8 97 33.0
Atru.chr6.1906 Acer truncatum HOM05D005764 ORTHO05D006600 4.9e-07 60.5 170 28.8
HanXRQChr04g0108171 Helianthus annuus HOM05D001779 ORTHO05D001753 4.9e-07 60.5 97 32.0
SGA_v2.0_scaffold171G38942 Striga asiatica HOM05D001779 ORTHO05D001753 4.9e-07 60.5 97 30.9
COL.COLO4_16723 Corchorus olitorius HOM05D007551 ORTHO05D009424 6.4e-07 60.1 174 25.3
CAN.G649.15 Capsicum annuum HOM05D001779 ORTHO05D001753 1.4e-06 58.9 97 33.0
MBI01_g37800_MAGBIO Magnolia biondii HOM05D000891 ORTHO05D000761 1.4e-06 58.9 76 35.5
SEGI_26661 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 1.4e-06 58.9 96 33.3
Aa31LG7G4660 Aethionema arabicum HOM05D000424 ORTHO05D000355 1.9e-06 58.5 117 24.8
Migut.H00180 Erythranthe guttata HOM05D000891 ORTHO05D000761 1.9e-06 58.5 153 27.5
Eucgr.K02161 Eucalyptus grandis HOM05D001779 ORTHO05D001753 1.9e-06 58.5 97 32.0
Gohir.D12G203200 Gossypium hirsutum HOM05D007551 ORTHO05D009424 1.9e-06 58.5 79 36.7
HanXRQChr04g0120331 Helianthus annuus HOM05D002986 ORTHO05D003966 1.9e-06 58.5 175 25.1
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 2.4e-06 58.2 109 28.4
Ciclev10024942m.g Citrus clementina HOM05D006819 ORTHO05D008763 2.4e-06 58.2 107 32.7
Sed0011000 Sechium edule HOM05D007551 ORTHO05D009424 2.4e-06 58.2 71 36.6
MELO3C016242.2 Cucumis melo HOM05D007551 ORTHO05D009424 3.2e-06 57.8 80 38.8
FAN05G1392 Fragaria x ananassa HOM05D000891 ORTHO05D000761 3.2e-06 57.8 46 47.8
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 3.2e-06 57.8 108 28.7
arahy.Tifrunner.gnm1.ann1.I4YG6Q Arachis hypogaea HOM05D000424 ORTHO05D000355 4.2e-06 57.4 106 24.5
CSS0011148 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D003966 4.2e-06 57.4 112 27.7
FvH4_6g30020 Fragaria vesca HOM05D000891 ORTHO05D000761 4.2e-06 57.4 46 47.8
FAN09G4590 Fragaria x ananassa HOM05D000891 ORTHO05D000761 4.2e-06 57.4 46 47.8
FAN14G0341 Fragaria x ananassa HOM05D000891 ORTHO05D000761 4.2e-06 57.4 46 47.8
Gorai.N026600 Gossypium raimondii HOM05D007551 ORTHO05D009424 4.2e-06 57.4 79 36.7
TAR362G0203 Trochodendron aralioides HOM05D007551 ORTHO05D009424 4.2e-06 57.4 193 25.9
ECA233G0980 Erigeron canadensis HOM05D001779 ORTHO05D001753 5.4e-06 57.0 97 30.9
Gohir.D10G136600 Gossypium hirsutum HOM05D000162 ORTHO05D000090 5.4e-06 57.0 101 29.7
Lj6A699G68 Lonicera japonica HOM05D001779 ORTHO05D001753 5.4e-06 57.0 92 31.5
PSO063G5422 Papaver somniferum HOM05D000162 ORTHO05D000090 5.4e-06 57.0 82 36.6
Potri.005G137900 Populus trichocarpa HOM05D000001 ORTHO05D000003 5.4e-06 57.0 148 25.7
Sc16g0011110 Simmondsia chinensis HOM05D007455 ORTHO05D009431 5.4e-06 57.0 172 23.8
ATR0807G010 Amborella trichopoda HOM05D006556 ORTHO05D008146 7.1e-06 56.6 111 27.0
ClCG07G011220 Citrullus lanatus HOM05D007551 ORTHO05D009424 7.1e-06 56.6 80 36.2
CsaV3_4G007030 Cucumis sativus L. HOM05D007551 ORTHO05D009424 7.1e-06 56.6 82 36.6
FvH4_1g18320 Fragaria vesca HOM05D000424 ORTHO05D000355 7.1e-06 56.6 111 25.2
FAN01G0244 Fragaria x ananassa HOM05D006556 ORTHO05D008146 7.1e-06 56.6 87 36.8
FAN19G2437 Fragaria x ananassa HOM05D000424 ORTHO05D000355 7.1e-06 56.6 111 25.2
FAN23G2322 Fragaria x ananassa HOM05D000424 ORTHO05D000355 7.1e-06 56.6 111 25.2
FAN26G1072 Fragaria x ananassa HOM05D000424 ORTHO05D000355 7.1e-06 56.6 111 25.2
HanXRQChr14g0440391 Helianthus annuus HOM05D000891 ORTHO05D000761 7.1e-06 56.6 112 31.2
Oeu014918.1 Olea europaea HOM05D000891 ORTHO05D000761 7.1e-06 56.6 96 33.3
Peaxi162Scf00016g00164 Petunia axillaris HOM05D006858 ORTHO05D008767 7.1e-06 56.6 179 25.7
Sopen01g002480 Solanum pennellii HOM05D001779 ORTHO05D001753 7.1e-06 56.6 97 32.0
PGSC0003DMG400032206 Solanum tuberosum HOM05D001779 ORTHO05D001753 7.1e-06 56.6 97 32.0
vmacro08165 Vaccinium macrocarpon HOM05D007202 ORTHO05D009125 7.1e-06 56.6 114 29.8
GSVIVG01026178001 Vitis vinifera HOM05D007202 ORTHO05D009125 7.1e-06 56.6 88 31.8
arahy.Tifrunner.gnm1.ann1.SFW5WJ Arachis hypogaea HOM05D000162 ORTHO05D000090 9.3e-06 56.2 96 31.2
Duzib093G1185 Durio zibethinus HOM05D000424 ORTHO05D000355 9.3e-06 56.2 118 27.1
Gorai.011G151500 Gossypium raimondii HOM05D000162 ORTHO05D000090 9.3e-06 56.2 101 29.7
Lsat_1_v5_gn_6_71420 Lactuca sativa HOM05D001779 ORTHO05D001753 9.3e-06 56.2 97 30.9
MD17G1208400 Malus domestica HOM05D000891 ORTHO05D000761 9.3e-06 56.2 46 45.7
RcHm_v2.0_Chr6g0303651 Rosa chinensis HOM05D000424 ORTHO05D000355 9.3e-06 56.2 105 26.7


User provided reference genes

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