Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G070400 Carya illinoinensis HOM05D000534 ORTHO05D000389 5.0e-39 164.1 90 100.0
Cfa008580 Carpinus fangiana HOM05D000534 ORTHO05D000389 2.0e-19 99.0 68 82.4
CiPaw.06G013400 Carya illinoinensis HOM05D000534 ORTHO05D000389 2.0e-19 99.0 68 82.4
Haze_11033 Corylus avellana HOM05D000534 ORTHO05D000389 2.0e-19 99.0 68 82.4
CiPaw.05G247900 Carya illinoinensis HOM05D000534 ORTHO05D000389 4.4e-19 97.8 68 82.4
COL.COLO4_20456 Corchorus olitorius HOM05D000534 ORTHO05D000389 5.8e-19 97.4 66 83.3
Duzib248G1003 Durio zibethinus HOM05D000534 ORTHO05D000389 3.8e-18 94.7 66 80.3
QL01p002230 Quercus lobata HOM05D000534 ORTHO05D000389 4.9e-18 94.4 68 76.5
TWI75G0446 Tripterygium wilfordii HOM05D000534 ORTHO05D000389 8.4e-18 93.6 68 76.5
Manes.14G135400 Manihot esculenta HOM05D000534 ORTHO05D000389 1.1e-17 93.2 68 76.5
Potri.008G127700 Populus trichocarpa HOM05D000534 ORTHO05D000389 1.1e-17 93.2 68 76.5
Eucgr.G02203 Eucalyptus grandis HOM05D000534 ORTHO05D000389 1.4e-17 92.8 68 75.0
Gohir.A03G123100 Gossypium hirsutum HOM05D000534 ORTHO05D000389 1.4e-17 92.8 67 77.6
Thecc.02G278600 Theobroma cacao HOM05D000534 ORTHO05D000389 1.9e-17 92.4 67 80.6
SHI16340 Sapria himalayana HOM05D000534 ORTHO05D000389 2.4e-17 92.0 68 73.5
Gohir.D02G145700 Gossypium hirsutum HOM05D000534 ORTHO05D000389 3.2e-17 91.7 67 76.1
Gorai.005G163100 Gossypium raimondii HOM05D000534 ORTHO05D000389 3.2e-17 91.7 67 76.1
QL01p002173 Quercus lobata HOM05D000534 ORTHO05D000389 3.2e-17 91.7 68 75.0
Hma1.2p1_0500F.1_g166920 Hydrangea macrophylla HOM05D000534 ORTHO05D000389 1.2e-16 89.7 68 72.1
Manes.06G061600 Manihot esculenta HOM05D000534 ORTHO05D000389 1.2e-16 89.7 68 73.5
Potri.010G115200 Populus trichocarpa HOM05D000534 ORTHO05D000389 1.2e-16 89.7 68 75.0
Sabra10G0085200 Salix brachista HOM05D000534 ORTHO05D000389 1.2e-16 89.7 68 75.0
TAR622G0310 Trochodendron aralioides HOM05D000534 ORTHO05D000389 1.6e-16 89.4 68 72.1
TAR622G1088 Trochodendron aralioides HOM05D000534 ORTHO05D000389 2.1e-16 89.0 68 70.6
THA.LOC104805898 Tarenaya hassleriana HOM05D000534 ORTHO05D000389 2.7e-16 88.6 68 69.1
CANSAT80G2056 Cannabis sativa HOM05D000534 ORTHO05D000389 3.5e-16 88.2 68 69.1
Actinidia14947 Actinidia chinensis HOM05D000534 ORTHO05D000389 4.6e-16 87.8 66 72.7
GSVIVG01011783001 Vitis vinifera HOM05D000534 ORTHO05D000389 4.6e-16 87.8 68 70.6
MD13G1027800 Malus domestica HOM05D000534 ORTHO05D000389 6.0e-16 87.4 68 73.5
Oeu044336.1 Olea europaea HOM05D000534 ORTHO05D000389 7.8e-16 87.0 68 70.6
Prupe.1G322300 Prunus persica HOM05D000534 ORTHO05D000389 7.8e-16 87.0 68 73.5
RcHm_v2.0_Chr4g0440881 Rosa chinensis HOM05D000534 ORTHO05D000389 7.8e-16 87.0 68 75.0
BcaC08g46547 Brassica carinata HOM05D000534 ORTHO05D000389 1.3e-15 86.3 67 70.1
C06p45210 Brassica napus HOM05D000534 ORTHO05D000389 1.3e-15 86.3 67 70.1
BolC6t39577H Brassica oleracea HOM05D000534 ORTHO05D000389 1.3e-15 86.3 67 70.1
Lj5g0013173 Lotus japonicus HOM05D000534 ORTHO05D000389 1.7e-15 85.9 69 69.6
Rhsim09G0100700 Rhododendron simsii HOM05D000534 ORTHO05D000389 2.3e-15 85.5 62 74.2
Ca_27117_v3 Cicer arietinum L. HOM05D000534 ORTHO05D000389 3.9e-15 84.7 68 70.6
Dinv05890 Davidia involucrata HOM05D000534 ORTHO05D000389 3.9e-15 84.7 67 70.1
Thhalv10018516m.g Eutrema salsugineum HOM05D000534 ORTHO05D000389 5.1e-15 84.3 68 67.6
PGR119G2522 Punica granatum HOM05D000534 ORTHO05D000389 5.1e-15 84.3 68 67.6
Sc10g0000960 Simmondsia chinensis HOM05D000534 ORTHO05D000389 5.1e-15 84.3 68 66.2
Atru.chr11.388 Acer truncatum HOM05D000534 ORTHO05D000389 6.6e-15 84.0 67 70.1
CARHR064380 Cardamine hirsuta HOM05D000534 ORTHO05D000389 6.6e-15 84.0 67 67.2
Lj2g0002933 Lotus japonicus HOM05D000534 ORTHO05D000389 6.6e-15 84.0 73 67.1
Aqoxy3G03976 Aquilegia oxysepala HOM05D000534 ORTHO05D000389 8.7e-15 83.6 68 69.1
BcaB03g14871 Brassica carinata HOM05D000534 ORTHO05D000389 8.7e-15 83.6 61 73.8
BcaC08g46551 Brassica carinata HOM05D000534 ORTHO05D000389 8.7e-15 83.6 61 73.8
A07p37510 Brassica napus HOM05D000534 ORTHO05D000389 8.7e-15 83.6 61 73.8
BraA07t31308Z Brassica rapa HOM05D000534 ORTHO05D000389 8.7e-15 83.6 61 73.8
CSS0035185 Camellia sinensis var. sinensis HOM05D000534 ORTHO05D000389 8.7e-15 83.6 68 67.6
Lj4P179T23 Lonicera japonica HOM05D000534 ORTHO05D000389 8.7e-15 83.6 68 64.7
MD16G1030900 Malus domestica HOM05D001299 ORTHO05D000389 8.7e-15 83.6 68 70.6
Nn3g18047 Nelumbo nucifera HOM05D000534 ORTHO05D000389 8.7e-15 83.6 66 68.2
ClCG01G006160 Citrullus lanatus HOM05D000534 ORTHO05D000389 1.5e-14 82.8 68 69.1
Dinv14865 Davidia involucrata HOM05D000534 ORTHO05D000389 1.5e-14 82.8 68 64.7
FAN07G2310 Fragaria x ananassa HOM05D000534 ORTHO05D000389 1.5e-14 82.8 68 70.6
Sp5g26260 Schrenkiella parvula HOM05D000534 ORTHO05D000389 1.9e-14 82.4 68 64.7
Dinv05147 Davidia involucrata HOM05D000534 ORTHO05D000389 2.5e-14 82.0 66 69.7
FAN17G1336 Fragaria x ananassa HOM05D001299 ORTHO05D000389 2.5e-14 82.0 68 70.6
FAN22G0149 Fragaria x ananassa HOM05D001299 ORTHO05D001985 2.5e-14 82.0 68 70.6
HanXRQChr15g0477311 Helianthus annuus HOM05D000534 ORTHO05D000389 2.5e-14 82.0 68 63.2
Rhsim10G0078300 Rhododendron simsii HOM05D000534 ORTHO05D000389 2.5e-14 82.0 68 66.2
Aqoxy7G00769 Aquilegia oxysepala HOM05D000534 ORTHO05D000389 4.3e-14 81.3 67 65.7
FvH4_4g32170 Fragaria vesca HOM05D000534 ORTHO05D000389 4.3e-14 81.3 68 70.6
FAN12G1267 Fragaria x ananassa HOM05D000534 ORTHO05D000389 4.3e-14 81.3 68 70.6
AL2G30670 Arabidopsis lyrata HOM05D000534 ORTHO05D000389 5.6e-14 80.9 62 67.7
Carub.0002s1791 Capsella rubella HOM05D000534 ORTHO05D000389 5.6e-14 80.9 61 70.5
Dinv16200 Davidia involucrata HOM05D000534 ORTHO05D000389 5.6e-14 80.9 66 68.2
Nn4g24067 Nelumbo nucifera HOM05D000534 ORTHO05D000389 5.6e-14 80.9 66 63.6
HPP92_027369 Vanilla planifolia HOM05D000534 ORTHO05D000389 5.6e-14 80.9 69 63.8
CsaV3_5G028500 Cucumis sativus L. HOM05D000534 ORTHO05D000389 7.3e-14 80.5 66 68.2
MBI10_g07298_MAGBIO Magnolia biondii HOM05D000534 ORTHO05D000389 7.3e-14 80.5 67 64.2
TWI74G0087 Tripterygium wilfordii HOM05D000534 ORTHO05D000389 7.3e-14 80.5 67 65.7
AT1G71090 Arabidopsis thaliana HOM05D000534 ORTHO05D000389 9.6e-14 80.1 61 68.9
Medtr5g054950 Medicago truncatula HOM05D000534 ORTHO05D000389 1.2e-13 79.7 68 66.2
PSO339G5375 Papaver somniferum HOM05D000534 ORTHO05D000389 1.2e-13 79.7 66 63.6
Psat0s2423g0040 Pisum sativum HOM05D000534 ORTHO05D000389 1.2e-13 79.7 73 65.8
CDE06G2799 Ceratophyllum demersum HOM05D000534 ORTHO05D000389 1.6e-13 79.3 67 62.7
MELO3C005311.2 Cucumis melo HOM05D000534 ORTHO05D000389 1.6e-13 79.3 68 64.7
Glyma.19G072900 Glycine max HOM05D000534 ORTHO05D000389 1.6e-13 79.3 68 66.2
Oeu047426.1 Olea europaea HOM05D000534 ORTHO05D000389 1.6e-13 79.3 68 60.3
Potri.017G122400 Populus trichocarpa HOM05D000534 ORTHO05D000389 1.6e-13 79.3 68 63.2
GSVIVG01030905001 Vitis vinifera HOM05D000534 ORTHO05D000389 1.6e-13 79.3 68 61.8
Phvul.003G029200 Phaseolus vulgaris HOM05D000534 ORTHO05D000389 2.1e-13 79.0 66 66.7
Actinidia36357 Actinidia chinensis HOM05D000534 ORTHO05D000389 2.8e-13 78.6 64 65.6
Ciclev10015208m.g Citrus clementina HOM05D000534 ORTHO05D000389 2.8e-13 78.6 65 64.6
Cc11_g08940 Coffea canephora HOM05D000534 ORTHO05D000389 2.8e-13 78.6 67 62.7
Lsat_1_v5_gn_3_54441 Lactuca sativa HOM05D000534 ORTHO05D000389 2.8e-13 78.6 67 62.7
Sabra17G0101200 Salix brachista HOM05D000534 ORTHO05D000389 2.8e-13 78.6 67 62.7
TPR.G38263 Trifolium pratense HOM05D000534 ORTHO05D000389 2.8e-13 78.6 68 66.2
MSTRG.3535 Avicennia marina HOM05D000534 ORTHO05D000389 3.6e-13 78.2 68 58.8
HanXRQChr09g0239721 Helianthus annuus HOM05D000534 ORTHO05D000389 3.6e-13 78.2 66 63.6
PSO513G0079 Papaver somniferum HOM05D000534 ORTHO05D000389 3.6e-13 78.2 66 62.1
Sed0027043 Sechium edule HOM05D000534 ORTHO05D000389 3.6e-13 78.2 68 66.2
Glyma.09G116100 Glycine max HOM05D000534 ORTHO05D000389 4.7e-13 77.8 68 64.7
HanXRQChr13g0398481 Helianthus annuus HOM05D000534 ORTHO05D000389 6.2e-13 77.4 68 61.8
arahy.Tifrunner.gnm1.ann1.6E8WTG Arachis hypogaea HOM05D000534 ORTHO05D000389 8.1e-13 77.0 68 64.7
VMungo1215G1234 Vigna mungo HOM05D000534 ORTHO05D000389 8.1e-13 77.0 68 64.7
CiPaw.03G066700 Carya illinoinensis HOM05D000534 ORTHO05D000389 1.1e-12 76.6 68 60.3
Lalb_Chr17g0338721 Lupinus albus HOM05D000534 ORTHO05D000389 1.1e-12 76.6 66 66.7
Sed0003982 Sechium edule HOM05D000534 ORTHO05D000389 1.1e-12 76.6 67 65.7
SGA_v2.0_scaffold49G18134 Striga asiatica HOM05D000534 ORTHO05D000389 1.1e-12 76.6 68 58.8
AUR62039561 Chenopodium quinoa HOM05D000534 ORTHO05D000389 1.4e-12 76.3 68 66.2
Peaxi162Scf00205g00043 Petunia axillaris HOM05D000534 ORTHO05D000389 1.4e-12 76.3 65 63.1
Sabra17G0103800 Salix brachista HOM05D000534 ORTHO05D000389 1.4e-12 76.3 67 61.2
SalBow3G3703 Salvia bowleyana HOM05D000534 ORTHO05D000389 3.1e-12 75.1 72 58.3
unitig_0.g2005 Utricularia gibba HOM05D000534 ORTHO05D000389 3.1e-12 75.1 68 58.8
AUR62014134 Chenopodium quinoa HOM05D000534 ORTHO05D000389 4.0e-12 74.7 68 64.7
Sc04g0005720 Simmondsia chinensis HOM05D000534 ORTHO05D000389 4.0e-12 74.7 68 63.2
TPR.G4887 Trifolium pratense HOM05D000534 ORTHO05D000389 4.0e-12 74.7 68 63.2
Migut.H00258 Erythranthe guttata HOM05D000534 ORTHO05D000389 5.3e-12 74.3 67 56.7
Potri.004G093200 Populus trichocarpa HOM05D000534 ORTHO05D000389 5.3e-12 74.3 68 57.4
arahy.Tifrunner.gnm1.ann1.SXH82X Arachis hypogaea HOM05D000534 ORTHO05D000389 6.9e-12 73.9 68 63.2
Psat6g221720 Pisum sativum HOM05D000534 ORTHO05D000389 6.9e-12 73.9 65 64.6
SalBow3G1777 Salvia bowleyana HOM05D000534 ORTHO05D000389 6.9e-12 73.9 72 56.9
ATR0326G037 Amborella trichopoda HOM05D000534 ORTHO05D000389 9.0e-12 73.6 68 55.9
Lsat_1_v5_gn_4_155220 Lactuca sativa HOM05D000534 ORTHO05D000389 9.0e-12 73.6 63 60.3
SEGI_18248 Sequoiadendron giganteum HOM05D000534 ORTHO05D000389 9.0e-12 73.6 63 60.3
EL10Ac6g14247 Beta vulgaris HOM05D000534 ORTHO05D000389 1.5e-11 72.8 68 64.7
PGR042G1070 Punica granatum HOM05D000534 ORTHO05D000389 1.5e-11 72.8 59 64.4
Cc07_g08300 Coffea canephora HOM05D000534 ORTHO05D000389 2.0e-11 72.4 61 63.9
Peaxi162Scf00803g00311 Petunia axillaris HOM05D000534 ORTHO05D000389 2.0e-11 72.4 68 58.8
Solyc02g091240.1 Solanum lycopersicum HOM05D000534 ORTHO05D000389 2.0e-11 72.4 64 59.4
Sopen02g035860 Solanum pennellii HOM05D000534 ORTHO05D000389 2.0e-11 72.4 64 59.4
Ah.02g113060 Amaranthus hybridus HOM05D000534 ORTHO05D000389 2.6e-11 72.0 72 62.5
MSTRG.23607 Avicennia marina HOM05D000534 ORTHO05D000389 4.4e-11 71.2 68 57.4
ClCG00G004870 Citrullus lanatus HOM05D000534 ORTHO05D000389 4.4e-11 71.2 68 58.8
Lalb_Chr04g0258621 Lupinus albus HOM05D000534 ORTHO05D000389 4.4e-11 71.2 68 61.8
Medtr1g108390 Medicago truncatula HOM05D000534 ORTHO05D000389 4.4e-11 71.2 68 58.8
Os08g0191000 Oryza sativa ssp. japonica HOM05D000534 ORTHO05D000389 4.4e-11 71.2 62 61.3
Actinidia15918 Actinidia chinensis HOM05D000534 ORTHO05D000389 5.8e-11 70.9 64 60.9
EL10Ac2g04510 Beta vulgaris HOM05D000534 ORTHO05D000389 7.6e-11 70.5 63 58.7
CAN.G1693.13 Capsicum annuum HOM05D000534 ORTHO05D000389 7.6e-11 70.5 66 56.1
ECA232G0803 Erigeron canadensis HOM05D000534 ORTHO05D000389 7.6e-11 70.5 65 53.8
Migut.E00409 Erythranthe guttata HOM05D000534 ORTHO05D000389 7.6e-11 70.5 62 59.7
PGSC0003DMG400030639 Solanum tuberosum HOM05D000534 ORTHO05D000389 7.6e-11 70.5 61 60.7
CAN.G625.72 Capsicum annuum HOM05D000534 ORTHO05D000389 9.9e-11 70.1 58 62.1
CANSAT01G3042 Cannabis sativa HOM05D000534 ORTHO05D000389 2.2e-10 68.9 71 57.7
Nitab4.5_0003598g0030 Nicotiana tabacum HOM05D000534 ORTHO05D000389 2.2e-10 68.9 68 55.9
Atru.chr1.1730 Acer truncatum HOM05D000534 ORTHO05D000389 2.9e-10 68.6 68 50.0
Atru.chr1.1742 Acer truncatum HOM05D000534 ORTHO05D000389 2.9e-10 68.6 68 50.0
Ciclev10013526m.g Citrus clementina HOM05D000534 ORTHO05D000389 4.9e-10 67.8 68 51.5
Eucgr.J01540 Eucalyptus grandis HOM05D000534 ORTHO05D000389 4.9e-10 67.8 68 52.9
Nitab4.5_0002456g0140 Nicotiana tabacum HOM05D000534 ORTHO05D000389 6.4e-10 67.4 61 57.4
Zm00001eb184320 Zea mays HOM05D000534 ORTHO05D000389 6.4e-10 67.4 61 57.4
Haze_14206 Corylus avellana HOM05D000534 ORTHO05D000389 8.4e-10 67.0 67 50.7
Nitab4.5_0007384g0050 Nicotiana tabacum HOM05D000534 ORTHO05D000389 1.4e-09 66.2 52 69.2
HanXRQChr09g0262391 Helianthus annuus HOM05D000534 ORTHO05D000389 1.9e-09 65.9 63 54.0
Cfa007868 Carpinus fangiana HOM05D000534 ORTHO05D000389 3.2e-09 65.1 67 49.3
MD17G1281100 Malus domestica HOM05D000534 ORTHO05D000389 3.2e-09 65.1 66 54.5
SalBow7G2118 Salvia bowleyana HOM05D000534 ORTHO05D000389 3.2e-09 65.1 57 61.4
Lj2P436T23 Lonicera japonica HOM05D000534 ORTHO05D000389 7.1e-09 63.9 45 75.6
RcHm_v2.0_Chr3g0493591 Rosa chinensis HOM05D000534 ORTHO05D000389 1.2e-08 63.2 62 54.8
FvH4_1g29070 Fragaria vesca HOM05D000534 ORTHO05D000389 1.6e-08 62.8 62 54.8
FAN19G2792 Fragaria x ananassa HOM05D000534 ORTHO05D000389 1.6e-08 62.8 62 54.8
Ciclev10011663m.g Citrus clementina HOM05D000534 ORTHO05D000389 2.1e-08 62.4 68 48.5
FAN23G1534 Fragaria x ananassa HOM05D000534 ORTHO05D000389 2.1e-08 62.4 62 53.2
FAN26G1020 Fragaria x ananassa HOM05D000534 ORTHO05D000389 2.7e-08 62.0 62 53.2
Manes.01G114600 Manihot esculenta HOM05D000534 ORTHO05D000389 3.5e-08 61.6 64 56.2
Thecc.04G124400 Theobroma cacao HOM05D000534 ORTHO05D000389 2.3e-07 58.9 66 48.5
Actinidia04709 Actinidia chinensis HOM05D000534 ORTHO05D000389 3.9e-07 58.2 62 56.5
Duzib138G1112 Durio zibethinus HOM05D000534 ORTHO05D000389 8.7e-07 57.0 66 48.5
Mapoly0092s0043 Marchantia polymorpha HOM05D000534 ORTHO05D000389 1.9e-06 55.8 63 49.2
AUR62023209 Chenopodium quinoa HOM05D000534 ORTHO05D000389 3.3e-06 55.1 43 65.1
AUR62023255 Chenopodium quinoa HOM05D000534 ORTHO05D000389 3.3e-06 55.1 43 65.1
Gohir.A07G075800 Gossypium hirsutum HOM05D000534 ORTHO05D000389 3.3e-06 55.1 64 46.9
Gohir.D07G080200 Gossypium hirsutum HOM05D000534 ORTHO05D000389 3.3e-06 55.1 64 46.9
Gorai.001G085300 Gossypium raimondii HOM05D000534 ORTHO05D000389 3.3e-06 55.1 64 46.9
Pp3c19_9720 Physcomitrium patens HOM05D000534 ORTHO05D000389 3.3e-06 55.1 58 50.0
SMO353G0038 Selaginella moellendorffii HOM05D000534 ORTHO05D000389 7.3e-06 53.9 62 45.2


User provided reference genes

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