Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 0.0e+00 1857.4 947 100.0
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 0.0e+00 1409.0 935 77.9
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 0.0e+00 1396.7 935 77.1
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 0.0e+00 1296.6 985 70.6
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1259.6 932 69.5
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 0.0e+00 1251.9 947 69.2
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 0.0e+00 1247.6 946 68.4
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1246.1 946 68.2
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1245.3 946 68.3
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1236.5 946 68.0
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 0.0e+00 1235.3 935 67.9
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 0.0e+00 1232.2 948 68.1
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 0.0e+00 1216.8 947 66.0
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 0.0e+00 1215.7 955 66.7
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1214.5 937 67.0
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 0.0e+00 1213.4 929 67.2
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 0.0e+00 1213.4 955 66.7
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1213.0 937 66.9
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 0.0e+00 1211.8 948 66.6
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 0.0e+00 1210.3 927 68.3
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 0.0e+00 1209.1 954 66.4
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 0.0e+00 1204.9 934 65.6
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 0.0e+00 1200.3 952 66.1
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 0.0e+00 1199.9 924 67.1
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 0.0e+00 1195.6 942 65.8
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 0.0e+00 1186.4 943 65.3
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 0.0e+00 1185.6 953 65.5
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 0.0e+00 1185.6 944 65.4
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 0.0e+00 1182.9 930 66.3
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 0.0e+00 1181.8 951 65.2
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 0.0e+00 1180.6 927 65.8
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 0.0e+00 1172.9 941 65.4
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 0.0e+00 1171.4 932 65.6
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 0.0e+00 1166.4 935 64.5
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 0.0e+00 1166.0 944 63.2
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 0.0e+00 1160.6 950 63.4
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 0.0e+00 1144.4 927 67.3
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 0.0e+00 1136.7 950 62.2
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 0.0e+00 1135.9 943 63.0
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 0.0e+00 1126.7 940 61.7
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 0.0e+00 1125.5 915 64.3
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 0.0e+00 1122.8 927 63.1
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 0.0e+00 1122.1 927 62.5
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 0.0e+00 1119.8 927 63.0
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 0.0e+00 1118.2 926 62.7
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 0.0e+00 1113.2 1002 60.3
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 0.0e+00 1113.2 945 62.3
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 0.0e+00 1111.7 944 60.4
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 0.0e+00 1105.5 942 60.8
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 0.0e+00 1104.4 936 61.2
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 0.0e+00 1103.6 937 60.7
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 0.0e+00 1100.1 941 60.6
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1096.3 933 60.5
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 0.0e+00 1094.7 924 60.8
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 0.0e+00 1093.2 943 60.2
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 0.0e+00 1085.9 854 67.3
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 0.0e+00 1082.8 919 60.9
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 0.0e+00 1082.8 825 67.3
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1082.8 932 60.3
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 0.0e+00 1082.0 931 59.8
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1080.9 934 60.0
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 0.0e+00 1080.5 930 59.9
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 0.0e+00 1079.3 926 59.7
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1077.4 935 59.4
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 0.0e+00 1077.4 925 59.0
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1075.8 935 59.3
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 0.0e+00 1075.8 935 59.3
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 0.0e+00 1075.1 923 59.5
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 6.5e-312 1073.9 931 59.6
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 3.8e-310 1068.1 951 58.8
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 6.4e-310 1067.4 950 58.9
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 1.1e-306 1056.6 927 60.8
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 2.5e-306 1055.4 923 58.9
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 4.0e-304 1048.1 918 60.0
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 6.9e-304 1047.3 932 58.4
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 4.4e-303 1044.6 927 59.2
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 7.6e-303 1043.9 934 58.6
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.9e-301 1039.3 766 69.2
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 2.7e-292 1008.8 819 64.8
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 7.9e-292 1007.3 938 56.4
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 5.1e-291 1004.6 939 57.2
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 2.5e-290 1002.3 933 57.6
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 1.6e-289 999.6 932 57.1
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 3.2e-285 985.3 929 56.4
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 4.2e-277 958.4 929 54.1
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 1.2e-268 930.2 943 54.1
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 4.1e-264 915.2 745 65.9
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 3.6e-260 902.1 691 66.3
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 2.2e-257 892.9 824 55.8
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 1.1e-240 837.4 917 49.9
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.5e-237 825.1 837 55.4
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 7.0e-208 728.4 651 59.6
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 1.2e-204 717.6 942 43.5
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 1.4e-203 714.1 974 43.1
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 1.2e-199 701.0 486 72.0
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 6.8e-195 685.3 875 44.6
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 1.6e-175 620.9 934 38.5
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 3.9e-158 563.1 421 66.5
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 8.8e-142 508.8 746 41.7
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.7e-140 503.4 396 64.4
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 9.1e-139 498.8 891 34.7
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 3.5e-138 496.9 465 59.6
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 2.2e-132 477.6 926 33.4
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 3.3e-125 453.8 876 33.2
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 2.2e-121 441.0 458 56.6
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.9e-113 414.1 452 52.4
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.6e-96 356.7 258 67.8
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 9.9e-85 319.3 444 46.2
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.5e-74 284.3 189 70.4
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 1.9e-51 208.8 463 33.9
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 4.5e-45 187.6 344 39.0
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 7.6e-45 186.8 350 38.9
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.3e-41 175.3 144 59.7
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.1e-38 164.5 351 33.3
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 2.2e-31 142.1 124 61.3
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 3.4e-29 134.8 132 57.6
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.9e-27 129.0 236 39.8
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 2.6e-21 108.6 121 53.7
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.5e-21 108.2 122 51.6
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.3e-20 106.3 111 53.2
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 5.0e-20 104.4 85 61.2
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 1.5e-19 102.8 85 60.0
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 3.2e-19 101.7 112 49.1
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 3.2e-19 101.7 111 51.4
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 4.0e-17 94.7 68 69.1
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 9.7e-16 90.1 132 43.2
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 3.7e-15 88.2 137 39.4
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 5.9e-13 80.9 93 47.3
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 7.7e-13 80.5 46 76.1
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.7e-12 79.3 61 62.3
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.5e-11 76.3 94 45.7
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.5e-11 75.5 61 60.7
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 4.2e-11 74.7 67 53.7
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 1.6e-10 72.8 174 30.5
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.1e-10 72.4 67 52.2
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 4.7e-10 71.2 69 47.8
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.2e-08 66.6 80 53.8
TPR.G3742 Trifolium pratense HOM05D004953 ORTHO05D006193 3.4e-08 65.1 38 78.9
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 6.3e-07 60.8 62 53.2
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.1e-06 60.1 62 54.8
Actinidia04704 Actinidia chinensis HOM05D004953 ORTHO05D006193 9.1e-06 57.0 119 36.1


User provided reference genes

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