Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 2392.8 1122 100.0
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 2038.5 1117 84.9
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1951.8 1112 78.7
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1941.4 1113 79.7
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1924.8 1116 78.5
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1917.1 1115 79.3
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1911.7 1112 78.9
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1908.6 1116 77.7
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1907.9 1112 78.7
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1897.5 1116 77.0
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1896.7 1118 77.1
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1895.2 1116 77.1
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1892.9 1128 78.1
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1888.6 1114 77.6
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1888.2 1116 77.2
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1867.0 990 87.0
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1867.0 1116 76.2
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1862.0 1119 76.7
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1856.3 1115 75.8
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1855.9 1115 75.7
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1848.2 1118 76.8
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1840.5 1112 74.3
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1829.7 1115 73.5
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1827.0 1075 76.9
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1817.7 1110 74.4
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1813.1 1113 73.4
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1810.4 1112 75.9
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1801.9 1113 72.7
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1796.9 1115 72.4
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1796.9 1117 72.8
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1796.6 1111 73.4
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1795.4 1229 68.7
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1794.6 1113 72.2
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1793.5 1115 73.0
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1791.9 1114 75.5
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1790.8 1119 73.5
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1790.4 1118 72.4
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1790.0 1067 75.6
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1784.6 1116 72.5
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1784.2 1115 71.7
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1773.8 1114 72.4
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1773.8 1113 71.7
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1773.4 1100 73.0
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1772.3 1115 72.2
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1771.1 1111 72.2
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1768.1 1120 71.5
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1764.6 1115 72.0
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1763.8 1113 71.6
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1761.1 1124 71.4
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1758.4 1112 71.4
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1758.0 1118 71.4
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1757.3 1118 71.3
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1753.0 1112 70.9
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1752.6 1113 71.2
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1749.6 1112 71.0
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1747.6 1112 71.0
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1746.5 1112 70.7
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1746.1 1103 71.3
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1746.1 1115 70.9
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1745.7 1112 70.2
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1745.7 1096 72.4
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1744.9 1126 70.1
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1742.6 1105 71.1
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1734.5 1113 70.7
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1731.8 1104 70.9
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1729.9 1104 71.1
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1727.6 1071 73.2
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1705.3 1067 72.5
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1696.0 1103 69.3
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1695.2 1096 69.7
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1694.9 1113 69.2
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1693.7 1111 67.8
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1691.4 1111 68.0
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1684.8 1085 71.1
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1684.1 1111 68.2
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1676.4 1119 68.8
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1661.7 1136 67.6
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1653.3 1128 67.5
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1648.3 1126 67.0
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1635.5 1120 66.2
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1635.2 1142 65.9
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1634.4 1098 68.3
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1571.6 1165 63.8
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1555.8 1112 62.8
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1546.2 998 71.2
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1515.0 896 77.8
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1508.8 929 74.8
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1494.9 1084 62.6
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1367.8 832 75.2
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1335.5 833 73.0
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1324.7 1135 54.0
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1318.5 1035 59.7
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1313.1 1117 55.0
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1270.8 751 76.6
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1265.4 1107 53.7
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1217.2 742 74.3
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1216.4 762 73.9
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1194.1 1115 51.4
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1154.4 666 77.3
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1083.2 692 74.1
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 7.7e-312 1074.3 1167 47.0
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 1.6e-259 900.2 681 61.8
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 3.4e-241 839.3 498 76.5
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 3.7e-224 782.7 517 68.5
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 9.2e-223 778.1 517 68.5
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.1e-220 771.2 569 61.5
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 5.0e-168 596.3 1421 31.0
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 1.2e-161 575.1 384 67.7
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 3.3e-148 530.4 1114 33.9
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 1.1e-146 525.4 615 45.4
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 2.1e-142 511.1 284 79.6
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 7.7e-121 439.5 240 81.2
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 3.5e-113 414.1 272 71.7
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 2.5e-111 407.9 588 40.1
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 3.9e-96 357.5 198 80.8
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 3.2e-90 337.8 201 75.1
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 1.5e-87 328.9 260 58.1
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 1.2e-86 325.9 174 86.2
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 3.8e-83 314.3 208 69.7
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 5.8e-68 263.8 156 70.5
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 2.2e-67 261.9 164 75.0
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 4.3e-63 247.7 208 55.3
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 7.4e-63 246.9 130 80.0
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 3.2e-50 204.9 123 72.4
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 7.4e-47 193.7 124 71.0
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 5.9e-36 157.5 105 64.8
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 1.1e-34 153.3 198 41.9
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 4.7e-33 147.9 172 45.3
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.8e-32 146.0 133 54.1
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 3.9e-32 144.8 85 70.6
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 3.3e-31 141.7 68 85.3
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 4.4e-31 141.4 96 69.8
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 5.7e-31 141.0 142 49.3
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 7.4e-31 140.6 113 52.2
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 1.3e-30 139.8 82 74.4
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 4.1e-29 134.8 132 51.5
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.2e-28 133.3 79 67.1
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 3.8e-27 128.3 141 49.6
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 2.2e-22 112.5 118 52.5
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.6e-20 106.3 53 84.9
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 4.5e-20 104.8 66 66.7
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 2.2e-19 102.4 114 44.7
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 8.8e-16 90.5 85 51.8
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 2.0e-15 89.4 136 41.2
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 2.6e-15 89.0 80 51.2
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 4.4e-15 88.2 43 81.4
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 4.4e-15 88.2 43 81.4
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 2.8e-14 85.5 43 81.4
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 1.8e-13 82.8 88 46.6
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 2.4e-13 82.4 43 76.7
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 1.2e-12 80.1 50 70.0
BcaC08g43326 Brassica carinata HOM05D005112 ORTHO05D006681 2.3e-08 65.9 61 49.2
FAN12G0942 Fragaria x ananassa HOM05D018336 ORTHO05D006090 3.7e-06 58.5 58 50.0
CSS0027518 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D111919 6.3e-06 57.8 27 85.2


User provided reference genes

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