Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 8.2e-244 846.7 436 100.0
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 3.1e-182 642.1 440 76.4
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 1.2e-181 640.2 442 77.4
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 6.6e-177 624.4 438 76.7
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 8.1e-175 617.5 438 76.0
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 1.4e-174 616.7 438 76.0
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.4e-174 616.7 438 76.0
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 1.2e-173 613.6 438 74.9
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.4e-173 612.1 438 76.0
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.4e-173 611.7 438 75.6
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.7e-172 609.8 438 75.3
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 8.3e-172 607.4 442 73.5
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 1.1e-171 607.1 443 72.2
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 2.4e-171 605.9 443 72.2
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 9.2e-171 604.0 438 73.3
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.7e-169 599.7 442 73.1
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 2.3e-169 599.4 443 72.7
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 6.6e-169 597.8 492 68.5
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 4.3e-168 595.1 446 71.7
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.8e-166 589.7 471 68.4
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 2.4e-166 589.3 446 72.2
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 9.9e-165 583.9 458 70.5
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 9.9e-165 583.9 448 70.8
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.8e-164 582.0 439 72.0
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 2.4e-163 579.3 447 70.7
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 1.6e-162 576.6 443 70.2
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 3.5e-162 575.5 445 70.6
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.6e-162 575.1 429 72.3
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 7.8e-162 574.3 443 68.8
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 2.3e-161 572.8 447 69.6
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 4.3e-160 568.5 438 69.2
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 7.3e-160 567.8 449 69.3
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 2.8e-159 565.8 447 69.1
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 3.6e-159 565.5 488 65.8
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 4.0e-158 562.0 442 69.0
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 3.4e-157 558.9 449 68.6
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 5.8e-157 558.1 442 67.2
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 7.6e-157 557.8 442 68.6
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 9.9e-157 557.4 449 67.9
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.3e-156 557.0 445 69.0
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 1.3e-156 557.0 452 65.7
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 2.2e-156 556.2 445 69.0
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 1.1e-155 553.9 457 66.5
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 3.2e-155 552.4 442 69.0
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 3.2e-155 552.4 452 67.5
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 9.3e-155 550.8 434 68.0
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 3.5e-154 548.9 450 67.3
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 1.0e-153 547.4 439 67.7
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 1.0e-153 547.4 439 67.9
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 2.3e-153 546.2 447 64.9
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 3.0e-153 545.8 446 68.2
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 3.9e-153 545.4 441 67.6
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 5.1e-153 545.0 439 68.6
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 1.1e-152 543.9 439 69.2
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.1e-152 543.9 447 66.7
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 4.3e-152 542.0 452 66.6
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 4.3e-152 542.0 439 68.1
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 5.6e-152 541.6 446 67.3
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 5.6e-152 541.6 439 68.6
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 7.3e-152 541.2 456 64.9
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 2.1e-151 539.7 439 67.4
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 3.6e-151 538.9 439 66.5
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 1.2e-149 533.9 449 66.6
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 1.2e-149 533.9 448 65.6
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 7.6e-149 531.2 452 63.3
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.9e-148 529.3 436 65.6
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 3.8e-148 528.9 442 65.6
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.1e-147 527.3 457 64.3
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 5.4e-147 525.0 452 63.3
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 1.2e-146 523.9 497 59.0
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.2e-146 523.9 438 66.4
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 3.5e-146 522.3 439 64.9
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.8e-145 520.0 446 64.3
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 5.1e-145 518.5 448 63.8
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 5.6e-144 515.0 428 65.9
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 7.4e-144 514.6 474 61.0
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.8e-142 510.0 436 65.1
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 5.3e-142 508.4 439 63.6
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 5.3e-142 508.4 439 63.6
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.2e-141 507.3 444 64.6
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 5.8e-141 505.0 438 63.7
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 1.0e-140 504.2 457 62.6
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 2.9e-140 502.7 458 63.1
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 4.9e-140 501.9 457 63.0
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 1.4e-139 500.4 458 62.9
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 1.9e-139 500.0 436 63.5
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 2.1e-138 496.5 439 62.4
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 4.6e-138 495.4 445 63.1
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 6.0e-138 495.0 456 62.3
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 6.0e-138 495.0 444 63.3
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 7.9e-138 494.6 438 64.2
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 5.7e-136 488.4 439 63.3
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.5e-133 480.3 449 59.9
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 9.3e-131 471.1 438 61.9
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 7.9e-130 468.0 438 60.5
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 1.9e-128 463.4 466 58.2
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 2.8e-127 459.5 439 60.1
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 1.1e-126 457.6 429 60.1
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 1.2e-125 454.1 431 59.4
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 1.3e-124 450.7 447 57.9
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 5.0e-124 448.7 447 57.5
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.8e-121 440.3 445 56.9
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 6.7e-121 438.3 438 58.7
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 6.7e-121 438.3 428 60.0
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 1.8e-118 430.3 442 55.2
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 2.9e-116 422.9 381 62.7
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 4.2e-115 419.1 448 57.1
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 3.0e-113 412.9 380 59.5
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 6.7e-113 411.8 438 56.6
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 4.4e-112 409.1 312 69.6
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 1.4e-110 404.1 444 56.1
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 3.8e-108 396.0 473 51.4
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 1.9e-107 393.7 435 54.3
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 1.4e-102 377.5 309 69.9
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 2.4e-102 376.7 380 57.6
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 7.0e-102 375.2 440 54.8
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 1.1e-99 367.9 437 51.3
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.5e-99 367.5 373 57.6
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 4.2e-99 365.9 299 65.9
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 2.4e-94 350.1 431 50.8
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 2.4e-94 350.1 314 64.0
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 2.9e-92 343.2 502 45.2
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.1e-91 341.3 478 47.5
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 3.6e-90 336.3 216 80.6
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.1e-83 314.7 440 48.6
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.2e-82 311.2 440 48.4
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 5.8e-72 275.8 169 80.5
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.4e-70 271.2 353 49.9
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 1.1e-59 235.0 256 53.5
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 1.1e-59 235.0 256 53.5
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.1e-57 228.4 138 81.9
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 2.6e-56 223.8 328 46.0
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.3e-44 184.9 188 55.9
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.5e-43 180.6 311 42.8
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 6.0e-37 159.5 120 66.7
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 4.8e-34 149.8 142 55.6
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 4.8e-34 149.8 145 55.2
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.0e-32 144.4 84 85.7
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.6e-32 144.1 92 79.3
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 3.4e-32 143.7 182 50.5
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 9.9e-32 142.1 261 40.6
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 3.8e-31 140.2 69 94.2
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 3.8e-31 140.2 74 87.8
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 5.5e-30 136.3 423 29.3
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 4.6e-29 133.3 137 54.7
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 3.0e-28 130.6 122 58.2
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 5.6e-27 126.3 95 67.4
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 8.1e-26 122.5 68 82.4
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 4.3e-19 100.1 562 25.3
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 4.2e-14 83.6 69 65.2
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.9e-11 74.7 56 66.1
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 3.3e-11 73.9 93 48.4
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 6.9e-09 66.2 126 41.3


User provided reference genes

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