Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1489.9 769 100.0
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1240.3 782 82.1
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1210.7 775 80.6
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1206.0 773 81.2
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 0.0e+00 1206.0 764 84.2
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1204.5 770 80.9
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1199.5 776 82.2
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1199.5 771 80.7
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1198.0 770 80.4
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1196.4 753 81.0
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1195.6 782 79.5
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1194.5 771 79.9
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1189.9 763 81.0
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1184.9 769 79.3
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1182.9 771 79.1
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1181.4 771 80.4
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1181.0 781 78.6
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1178.3 768 79.3
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1177.2 782 79.9
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1177.2 772 78.4
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1174.5 781 78.5
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1173.7 786 78.2
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1173.3 772 78.9
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1170.2 780 77.7
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1169.5 786 78.2
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1169.1 770 78.3
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1167.5 769 78.5
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1161.7 781 77.1
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1161.0 780 79.0
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1160.2 762 78.5
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1160.2 775 77.0
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1159.4 788 77.2
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1157.9 773 78.9
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1154.0 707 83.7
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1148.7 789 75.9
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1147.9 767 77.3
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1139.4 770 75.8
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1137.9 770 77.0
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1137.1 772 75.8
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1136.7 772 75.5
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1134.4 782 76.7
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 0.0e+00 1129.8 782 76.3
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1124.8 762 76.4
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 0.0e+00 1120.5 769 74.3
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 0.0e+00 1120.1 718 79.5
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1116.7 831 71.6
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1114.8 758 75.7
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1112.4 765 74.5
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 0.0e+00 1111.7 818 72.9
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1110.1 781 76.4
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1109.0 781 76.4
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1108.2 790 73.9
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1107.8 778 76.3
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1097.4 692 79.6
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 0.0e+00 1095.5 696 80.0
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1095.5 758 76.5
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 0.0e+00 1086.2 771 73.3
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1085.1 773 73.6
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 0.0e+00 1083.6 727 77.4
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1081.2 773 73.0
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1081.2 773 73.0
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 0.0e+00 1080.1 782 74.8
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 0.0e+00 1075.8 725 75.3
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 0.0e+00 1075.1 741 76.0
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 0.0e+00 1075.1 724 77.8
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 5.3e-312 1073.5 772 73.1
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 2.6e-311 1071.6 781 74.0
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 6.3e-311 1070.5 783 73.9
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 7.9e-311 1070.1 749 74.9
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 7.9e-311 1070.1 780 74.5
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 5.2e-310 1067.4 774 71.6
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 8.8e-310 1066.6 780 74.2
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 2.6e-309 1065.1 843 68.3
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 1.3e-308 1062.8 780 72.1
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 3.7e-308 1061.2 774 72.4
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 6.4e-308 1060.4 784 73.3
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 1.8e-307 1058.9 779 74.1
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 1.8e-307 1058.9 725 75.9
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 7.0e-307 1057.0 779 74.5
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 9.2e-307 1056.6 778 74.4
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 9.2e-307 1056.6 778 74.0
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 1.6e-306 1055.8 778 73.9
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 1.6e-306 1055.8 764 73.3
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 2.7e-306 1055.0 782 73.4
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 3.5e-306 1054.7 779 74.2
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 5.9e-306 1053.9 723 76.2
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 3.0e-305 1051.6 649 81.8
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 8.6e-305 1050.0 778 71.9
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 5.6e-304 1047.3 622 90.0
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 4.0e-302 1041.2 755 72.8
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 3.2e-299 1031.6 769 71.0
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 3.3e-296 1021.5 770 70.0
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 8.1e-295 1016.9 768 70.2
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 3.5e-290 1001.5 724 72.5
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 4.6e-290 1001.1 772 69.0
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 4.3e-288 994.6 694 75.4
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 6.2e-279 964.1 740 69.3
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 3.5e-250 868.6 541 79.7
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.8e-249 866.3 541 79.3
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 2.2e-236 822.8 721 58.1
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 1.4e-233 813.5 748 56.7
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 1.2e-226 790.4 708 59.5
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 8.8e-225 784.3 534 69.1
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.5e-224 783.5 743 54.6
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 8.5e-220 767.7 775 55.5
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 2.2e-215 753.1 529 68.4
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 4.2e-211 738.8 529 66.7
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 8.8e-201 704.5 545 63.5
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 4.3e-195 685.6 414 81.2
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 2.6e-176 623.2 397 79.1
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 4.1e-166 589.3 414 67.6
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 5.3e-153 545.8 343 79.0
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.6e-130 471.1 263 84.8
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 1.1e-105 388.7 693 37.5
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 4.4e-99 366.7 491 43.0
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 3.7e-98 363.6 295 65.1
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.8e-97 361.3 274 65.7
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 2.8e-90 337.4 611 41.2
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 8.6e-79 299.3 277 62.1
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 6.6e-71 273.1 662 31.1
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 8.0e-69 266.2 349 47.9
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 1.7e-39 168.7 99 77.8
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 4.8e-37 160.6 149 60.4
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 6.2e-37 160.2 83 86.7
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 2.9e-34 151.4 119 66.4
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 7.9e-24 116.7 136 50.7
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 2.8e-21 108.2 115 49.6
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 4.8e-21 107.5 54 85.2
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 1.1e-17 96.3 157 39.5
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 1.9e-17 95.5 103 49.5
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 4.1e-12 77.8 74 59.5
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 4.5e-11 74.3 41 82.9
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 6.5e-10 70.5 58 62.1
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.1e-09 69.7 366 24.6
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.0e-07 63.2 80 43.8
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 3.0e-07 61.6 253 24.1
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 1.1e-06 59.7 249 23.7
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 1.1e-06 59.7 85 40.0
Prupe.7G070400 Prunus persica HOM05D008447 ORTHO05D010638 1.1e-06 59.7 271 26.2
Nn4g25166 Nelumbo nucifera HOM05D007982 ORTHO05D010255 1.5e-06 59.3 362 23.5
Gorai.002G037200 Gossypium raimondii HOM05D008447 ORTHO05D010638 3.3e-06 58.2 249 23.3
Gohir.D01G027950 Gossypium hirsutum HOM05D008447 ORTHO05D010638 9.7e-06 56.6 266 22.9


User provided reference genes

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