Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 9.3e-231 803.1 390 100.0
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 5.7e-172 607.8 415 72.5
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 4.5e-169 598.2 420 70.7
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 2.9e-168 595.5 420 70.7
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 6.6e-160 567.8 390 70.5
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 2.4e-154 549.3 413 64.9
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 5.9e-153 544.7 422 64.7
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 1.6e-150 536.6 413 63.2
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 2.8e-150 535.8 416 63.7
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 1.4e-149 533.5 413 63.2
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 3.7e-147 525.4 414 60.6
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.1e-146 523.9 421 61.3
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 1.9e-146 523.1 416 61.8
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 1.9e-146 523.1 416 60.3
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 3.2e-146 522.3 416 61.3
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 4.1e-146 521.9 418 61.7
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 5.4e-146 521.5 422 60.7
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 4.6e-145 518.5 428 61.2
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 4.6e-145 518.5 421 61.3
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 1.1e-143 513.8 420 59.5
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 2.5e-143 512.7 420 59.5
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.2e-142 510.4 415 59.5
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 1.2e-142 510.4 426 59.2
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.6e-142 510.0 414 59.9
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 2.1e-142 509.6 415 59.8
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 2.8e-142 509.2 419 58.0
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.6e-142 508.8 415 59.5
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 3.6e-142 508.8 423 59.8
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 4.7e-142 508.4 417 59.0
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 6.2e-142 508.1 414 59.4
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 1.4e-141 506.9 414 60.1
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 1.4e-141 506.9 415 60.2
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 2.3e-141 506.1 421 58.7
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 8.9e-141 504.2 419 59.2
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.5e-140 503.4 422 57.3
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.5e-140 503.4 422 57.3
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 2.0e-140 503.1 419 58.2
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 2.6e-140 502.7 421 57.5
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 4.4e-140 501.9 428 57.7
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 7.5e-140 501.1 410 58.8
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 1.3e-139 500.4 418 60.8
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 2.9e-139 499.2 421 57.0
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 8.3e-139 497.7 449 56.6
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 1.1e-138 497.3 419 57.8
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 2.4e-138 496.1 412 57.8
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 2.4e-138 496.1 415 59.0
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 1.2e-137 493.8 416 60.3
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.2e-137 493.8 424 56.6
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 2.3e-136 489.6 424 55.4
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 6.6e-136 488.0 421 55.6
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 8.6e-136 487.6 417 55.9
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 1.1e-135 487.3 420 56.4
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.1e-135 487.3 418 59.6
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 3.3e-135 485.7 416 57.0
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 3.6e-134 482.3 415 57.1
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 1.4e-133 480.3 426 56.1
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 1.5e-132 476.9 418 56.0
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 2.0e-132 476.5 521 48.8
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 2.6e-132 476.1 420 55.2
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 2.6e-132 476.1 418 55.7
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 9.9e-132 474.2 419 55.6
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 1.3e-131 473.8 391 57.0
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 2.9e-131 472.6 418 55.5
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 4.9e-131 471.9 417 55.4
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 2.4e-130 469.5 493 47.5
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 9.2e-130 467.6 398 58.3
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 1.7e-128 463.4 400 57.8
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 1.9e-127 459.9 415 54.5
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 2.5e-127 459.5 406 57.1
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 5.6e-127 458.4 415 54.7
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 9.6e-127 457.6 418 55.0
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 1.2e-126 457.2 418 55.0
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 3.6e-126 455.7 418 54.8
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 4.7e-126 455.3 521 44.9
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 8.1e-126 454.5 426 52.1
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.1e-125 454.1 400 56.2
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 6.8e-125 451.4 409 55.7
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 4.4e-124 448.7 463 50.1
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 4.9e-123 445.3 406 55.9
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 7.1e-122 441.4 401 54.9
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 2.1e-121 439.9 402 53.2
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 2.1e-121 439.9 423 52.0
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 2.7e-121 439.5 397 52.4
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 3.5e-121 439.1 402 54.2
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 7.8e-121 438.0 459 49.5
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 1.3e-120 437.2 386 55.2
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 2.3e-120 436.4 394 54.8
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 3.0e-120 436.0 404 52.7
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 3.9e-120 435.6 402 52.7
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 2.5e-119 433.0 399 51.4
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 2.5e-119 433.0 378 56.9
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 4.3e-119 432.2 419 49.6
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 7.3e-119 431.4 417 50.4
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 4.8e-118 428.7 388 53.9
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 5.3e-117 425.2 396 51.5
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 1.9e-114 416.8 395 51.4
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 7.1e-114 414.8 425 48.9
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 7.1e-114 414.8 403 51.4
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 3.9e-112 409.1 402 49.8
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 9.6e-111 404.4 450 45.1
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 2.1e-110 403.3 458 44.8
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 1.2e-108 397.5 452 45.4
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 2.0e-108 396.7 401 47.1
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 2.0e-108 396.7 355 56.3
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 2.6e-108 396.4 402 48.0
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 5.8e-108 395.2 398 47.7
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 5.8e-108 395.2 398 47.7
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 1.7e-107 393.7 398 47.7
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.1e-103 380.9 334 56.6
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.1e-103 380.9 334 56.6
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 3.9e-96 355.9 400 47.0
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 3.5e-89 332.8 431 41.1
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 6.1e-89 332.0 412 45.1
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 8.7e-88 328.2 438 42.5
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 2.2e-86 323.6 399 41.9
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 2.8e-86 323.2 242 60.3
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 3.1e-85 319.7 417 41.5
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 6.7e-80 302.0 258 57.0
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 4.2e-74 282.7 170 74.7
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 3.7e-70 269.6 412 38.6
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 5.2e-64 249.2 141 76.6
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 8.2e-62 241.9 149 71.8
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.3e-59 234.6 422 33.6
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.4e-56 224.6 144 70.8
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 7.0e-53 212.2 546 28.9
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 5.9e-44 182.6 121 64.5
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.4e-37 160.6 91 74.7
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 8.6e-35 152.1 191 42.9
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 4.9e-30 136.3 133 50.4
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 5.4e-29 132.9 82 69.5
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 4.3e-26 123.2 72 76.4
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 4.3e-26 123.2 72 76.4
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 5.2e-24 116.3 66 74.2
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 7.1e-21 105.9 85 54.1
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 3.0e-19 100.5 55 74.5
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 3.9e-19 100.1 66 66.7
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 2.1e-12 77.8 74 52.7
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 6.6e-11 72.8 75 49.3
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 2.5e-10 70.9 61 60.7
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 1.1e-08 65.5 187 27.8


User provided reference genes

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