Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 0.0e+00 1587.4 811 100.0
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 0.0e+00 1193.7 796 76.9
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 0.0e+00 1179.1 762 79.7
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 8.8e-300 1033.5 788 67.4
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 1.8e-297 1025.8 772 66.6
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 6.7e-292 1007.3 717 70.2
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.6e-277 959.5 778 62.3
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 4.7e-277 958.0 800 65.0
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 3.7e-274 948.3 777 62.7
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 1.1e-273 946.8 778 65.0
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 4.7e-269 931.4 778 61.3
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 1.4e-268 929.9 716 65.9
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 1.7e-266 922.9 831 59.4
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 2.4e-265 919.1 778 62.3
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 8.9e-260 900.6 720 64.7
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 4.4e-259 898.3 778 59.9
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 9.2e-257 890.6 785 60.1
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.1e-254 883.6 778 59.5
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 2.5e-254 882.5 767 62.5
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 4.7e-253 878.2 720 64.0
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 1.8e-252 876.3 818 57.3
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 4.0e-252 875.2 796 57.9
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 1.2e-243 847.0 747 60.9
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 5.8e-243 844.7 753 57.6
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 9.9e-243 844.0 742 57.7
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 2.4e-241 839.3 853 54.2
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 1.2e-240 837.0 781 56.6
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 1.2e-240 837.0 779 56.5
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 1.6e-240 836.6 780 57.6
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 8.6e-239 830.9 798 55.1
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 7.3e-238 827.8 805 56.1
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 1.2e-237 827.0 742 58.5
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 1.6e-237 826.6 742 58.1
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.1e-236 823.9 778 57.1
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 6.8e-236 821.2 889 52.0
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 1.2e-235 820.5 717 59.3
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 1.5e-235 820.1 788 55.2
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 3.8e-234 815.5 740 57.0
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 4.9e-234 815.1 799 54.6
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 3.9e-231 805.4 800 53.8
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 3.9e-231 805.4 780 57.6
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 5.1e-231 805.1 777 55.6
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 4.7e-229 798.5 760 55.8
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 6.2e-229 798.1 730 60.0
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 1.8e-228 796.6 800 54.1
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 4.0e-228 795.4 747 56.4
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 1.2e-227 793.9 758 55.8
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 4.4e-227 792.0 725 57.8
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.7e-226 790.0 778 55.8
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 1.4e-225 786.9 716 56.8
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 3.2e-225 785.8 768 54.7
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 5.4e-225 785.0 739 57.4
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 5.4e-225 785.0 739 57.4
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 5.4e-225 785.0 752 55.7
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 1.2e-224 783.9 750 55.9
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 2.1e-224 783.1 750 56.0
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 1.0e-223 780.8 796 52.6
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 1.3e-223 780.4 729 56.4
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 4.3e-222 775.4 741 55.6
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 1.3e-215 753.8 721 57.3
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 3.0e-215 752.7 771 53.4
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 3.9e-215 752.3 589 64.7
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 6.7e-215 751.5 622 61.4
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 2.8e-213 746.1 828 50.0
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 6.4e-210 734.9 671 57.1
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 3.5e-208 729.2 779 51.7
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 1.8e-207 726.9 773 52.9
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 1.6e-205 720.3 816 48.9
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 1.2e-203 714.1 644 58.4
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 6.5e-202 708.4 773 51.1
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 1.6e-200 703.7 747 54.5
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 3.5e-200 702.6 726 52.9
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 1.3e-199 700.7 730 52.6
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 1.9e-198 696.8 835 49.6
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 2.8e-197 693.0 740 50.5
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 4.8e-197 692.2 722 53.3
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 1.8e-196 690.3 708 54.0
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 1.5e-195 687.2 735 49.9
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 1.6e-192 677.2 795 49.8
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 8.8e-191 671.4 808 48.3
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 2.6e-187 659.8 847 45.8
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 7.7e-187 658.3 605 56.7
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 8.8e-183 644.8 588 58.8
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 1.5e-182 644.0 795 47.2
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 1.7e-181 640.6 569 58.5
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 2.4e-180 636.7 835 46.7
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 4.7e-176 622.5 761 45.2
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 1.7e-173 614.0 770 45.8
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 2.5e-169 600.1 748 46.9
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 7.0e-164 582.0 587 52.0
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 2.7e-163 580.1 807 41.5
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 1.7e-162 577.4 590 54.9
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 3.1e-148 530.0 547 51.2
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 1.8e-143 514.2 599 47.6
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 8.9e-143 511.9 762 39.6
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 3.3e-137 493.4 738 41.6
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 3.0e-130 470.3 495 51.9
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 2.4e-124 450.7 588 44.4
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 3.6e-104 383.6 309 63.4
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 6.9e-79 299.7 332 48.5
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 9.4e-68 262.7 537 36.7
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 1.1e-63 249.2 231 55.4
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 4.1e-63 247.3 228 55.7
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 5.0e-61 240.4 339 44.2
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 7.2e-52 209.9 159 65.4
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 6.8e-50 203.4 721 27.0
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 1.5e-49 202.2 759 26.1
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 4.5e-46 190.7 451 30.2
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 4.5e-46 190.7 594 27.1
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 6.5e-45 186.8 638 25.5
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 5.2e-34 150.6 137 57.7
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 3.7e-32 144.4 145 50.3
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 3.7e-32 144.4 145 50.3
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 3.1e-26 124.8 116 56.9
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 9.8e-25 119.8 142 45.8
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 1.3e-24 119.4 114 57.9
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 1.3e-24 119.4 114 57.9
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 1.2e-22 112.8 102 55.9
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 1.3e-13 82.8 71 62.0
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 1.3e-13 82.8 95 45.3
Aqoxy5G04247 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 1.2e-11 76.3 690 20.1
vmacro21815 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 3.6e-11 74.7 78 53.8
AagrBONN_evm.TU.Sc2ySwM_368.2006__2007 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.2e-10 70.9 557 20.3
AagrBONN_evm.TU.Sc2ySwM_344.2113 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.5e-09 69.3 256 25.8
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 5.8e-09 67.4 68 52.9
AagrBONN_evm.TU.Sc2ySwM_228.1156 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-08 66.2 284 23.6
AagrBONN_evm.TU.Sc2ySwM_117.3059 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.7e-08 64.7 387 20.9
SMO353G0104 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 1.1e-07 63.2 416 20.4
Carub.0005s2535 Capsella rubella HOM05D000001 ORTHO05D009704 1.9e-07 62.4 294 22.8
AagrBONN_evm.TU.Sc2ySwM_344.4894__4895 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.2e-07 61.6 281 23.1
AagrBONN_evm.TU.Sc2ySwM_344.2432 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.5e-06 58.2 257 23.0
Sed0021894 Sechium edule HOM05D000001 ORTHO05D000003 3.5e-06 58.2 365 21.6
AagrBONN_evm.TU.Sc2ySwM_228.411 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.6e-06 57.8 522 19.9
THA.LOC104808118 Tarenaya hassleriana HOM05D006918 ORTHO05D008525 6.0e-06 57.4 136 25.7
GSVIVG01024912001 Vitis vinifera HOM05D000001 ORTHO05D010418 6.0e-06 57.4 283 23.0
ClCG11G005880 Citrullus lanatus HOM05D000001 ORTHO05D000003 7.8e-06 57.0 350 21.1
Thhalv10018334m.g Eutrema salsugineum HOM05D006918 ORTHO05D008525 7.8e-06 57.0 136 25.7


User provided reference genes

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