Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 2.7e-210 735.3 440 100.0
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 6.5e-148 528.1 461 71.1
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 3.2e-147 525.8 454 73.1
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 1.3e-135 487.3 441 63.7
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 1.1e-131 474.2 438 64.8
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.9e-131 473.4 457 60.2
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 1.5e-128 463.8 456 64.3
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 4.1e-126 455.7 460 58.9
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 1.1e-123 447.6 454 60.8
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 7.2e-123 444.9 441 59.6
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 1.2e-122 444.1 441 64.9
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.0e-121 441.0 459 63.0
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 2.3e-121 439.9 448 61.6
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 2.3e-121 439.9 447 62.6
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 8.8e-121 438.0 476 59.7
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 3.4e-120 436.0 474 57.0
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 2.8e-119 433.0 472 55.5
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 3.7e-119 432.6 492 58.5
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 4.8e-119 432.2 449 58.4
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.1e-118 429.5 444 57.4
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.1e-118 429.1 461 56.8
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 9.1e-118 427.9 461 56.8
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.0e-117 426.8 440 58.9
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 3.5e-117 426.0 463 60.7
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.7e-116 423.7 452 61.1
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 2.3e-116 423.3 503 57.3
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 5.0e-116 422.2 442 61.5
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 1.9e-115 420.2 441 61.9
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 1.6e-114 417.2 446 56.7
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.1e-114 416.8 480 56.5
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 8.0e-114 414.8 444 57.4
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.3e-113 413.3 481 54.9
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.0e-113 412.5 480 52.7
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 4.0e-113 412.5 479 60.3
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 5.2e-113 412.1 481 54.1
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 5.2e-113 412.1 513 53.0
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 8.9e-113 411.4 469 54.4
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.2e-112 411.0 442 63.1
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.0e-112 410.2 481 55.5
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 3.4e-112 409.5 487 52.4
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 4.4e-112 409.1 442 60.0
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 7.5e-112 408.3 474 58.2
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 7.5e-112 408.3 505 54.7
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.2e-111 406.8 442 62.9
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 2.2e-111 406.8 442 63.1
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.8e-111 406.4 489 55.8
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 4.9e-111 405.6 505 51.7
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 1.4e-110 404.1 509 51.7
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 5.4e-110 402.1 463 54.2
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 5.9e-109 398.7 449 56.1
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 5.9e-109 398.7 441 58.0
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 5.9e-109 398.7 456 53.9
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 7.8e-109 398.3 454 55.3
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 1.3e-108 397.5 521 51.8
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 1.7e-108 397.1 457 58.6
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 5.0e-108 395.6 480 51.9
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 6.6e-108 395.2 482 51.7
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 8.6e-108 394.8 438 62.3
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.3e-107 392.9 447 55.0
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 2.8e-106 389.8 473 52.4
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 1.4e-105 387.5 464 60.3
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 8.9e-105 384.8 444 61.9
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 2.6e-104 383.3 456 54.8
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 1.3e-103 380.9 445 58.4
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 8.3e-103 378.3 531 47.8
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 1.9e-102 377.1 439 52.6
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 2.4e-102 376.7 463 53.1
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 4.1e-102 375.9 448 52.9
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 6.0e-101 372.1 478 61.7
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 1.0e-100 371.3 482 50.8
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 1.3e-100 370.9 454 53.3
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 1.7e-100 370.5 499 55.7
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 5.0e-100 369.0 455 51.2
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 1.5e-99 367.5 478 50.2
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 1.9e-99 367.1 504 49.0
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 4.3e-99 365.9 514 56.2
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 5.6e-99 365.5 459 51.9
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 9.5e-99 364.8 478 52.1
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.2e-98 364.4 486 52.9
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 4.0e-97 359.4 453 53.2
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 3.7e-95 352.8 497 47.9
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 6.4e-95 352.1 499 48.1
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 1.1e-94 351.3 468 51.3
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 1.6e-93 347.4 444 50.9
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 2.1e-93 347.1 447 57.9
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 2.7e-93 346.7 451 48.3
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 2.7e-93 346.7 440 50.2
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 1.7e-92 344.0 463 53.6
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 2.3e-92 343.6 453 52.5
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 1.1e-91 341.3 453 56.7
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.5e-91 340.9 443 49.2
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.5e-91 340.9 472 54.4
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 2.5e-91 340.1 424 55.0
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 1.2e-90 337.8 423 52.2
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 1.2e-90 337.8 462 48.1
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 6.2e-90 335.5 453 54.1
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 6.8e-89 332.0 508 44.7
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 8.9e-89 331.6 462 52.4
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.5e-88 330.9 503 49.1
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 6.4e-87 325.5 409 52.1
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 1.4e-86 324.3 492 48.2
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 1.9e-86 323.9 473 49.3
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 1.2e-85 321.2 200 81.0
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 4.6e-85 319.3 447 47.4
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 6.0e-85 318.9 325 59.4
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.8e-81 307.4 448 48.7
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 5.8e-80 302.4 296 65.9
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 3.8e-79 299.7 177 84.2
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 7.1e-78 295.4 490 44.9
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 3.3e-75 286.6 454 46.3
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 2.8e-74 283.5 500 46.0
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 8.1e-74 282.0 196 75.0
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 1.8e-73 280.8 444 44.8
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 2.4e-73 280.4 407 51.8
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 9.9e-72 275.0 432 43.8
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 2.9e-71 273.5 469 41.4
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.2e-70 270.0 406 45.6
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 3.9e-68 263.1 303 52.1
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 5.6e-59 232.6 389 51.4
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 6.2e-58 229.2 128 86.7
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 5.8e-56 222.6 327 48.9
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 5.8e-56 222.6 392 48.0
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 5.1e-52 209.5 372 41.7
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 7.4e-51 205.7 165 67.3
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 1.8e-49 201.1 384 39.6
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 3.3e-43 180.3 506 33.8
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 5.9e-40 169.5 181 50.8
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 1.0e-36 158.7 417 37.6
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 1.3e-34 151.8 165 50.9
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 2.0e-32 144.4 406 34.0
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 1.9e-30 137.9 147 47.6
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 1.1e-25 122.1 65 92.3
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 7.0e-25 119.4 75 77.3
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.6e-21 108.2 86 66.3
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 8.8e-20 102.4 97 58.8
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 4.8e-18 96.7 90 63.3
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 1.3e-15 88.6 102 49.0
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 1.3e-15 88.6 102 49.0
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 3.8e-15 87.0 62 71.0
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 3.8e-15 87.0 62 71.0
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 2.5e-14 84.3 201 32.3
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 5.5e-14 83.2 53 71.7
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 5.5e-14 83.2 49 85.7
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 4.0e-12 77.0 79 58.2
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 4.5e-08 63.5 65 53.8
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 8.5e-07 59.3 113 31.9
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 1.1e-06 58.9 122 27.9
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 1.1e-06 58.9 122 27.9
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 1.1e-06 58.9 122 27.9
Aa31LG10G13570 Aethionema arabicum HOM05D000230 ORTHO05D000176 1.5e-06 58.5 122 27.9
AT3G59100 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 1.5e-06 58.5 122 27.9
Carub.0005s2586 Capsella rubella HOM05D000230 ORTHO05D000176 1.5e-06 58.5 122 27.9
Sp5g03890 Schrenkiella parvula HOM05D000230 ORTHO05D000176 1.5e-06 58.5 122 27.9
ECA238G0891 Erigeron canadensis HOM05D000230 ORTHO05D000176 1.9e-06 58.2 139 25.9
Thhalv10005734m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 1.9e-06 58.2 122 27.9
AL5G40990 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 2.5e-06 57.8 122 27.9
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 2.5e-06 57.8 122 27.9
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 2.5e-06 57.8 122 27.9
EL10Ac4g10331 Beta vulgaris HOM05D000230 ORTHO05D000176 3.2e-06 57.4 126 27.8
BcaB02g07484 Brassica carinata HOM05D000230 ORTHO05D000176 3.2e-06 57.4 122 27.9
AUR62000045 Chenopodium quinoa HOM05D000230 ORTHO05D000176 3.2e-06 57.4 126 27.8
AUR62019215 Chenopodium quinoa HOM05D000230 ORTHO05D000176 3.2e-06 57.4 126 27.8
ATR0568G101 Amborella trichopoda HOM05D000230 ORTHO05D000176 5.5e-06 56.6 145 26.2
Rhsim01G0186600 Rhododendron simsii HOM05D000230 ORTHO05D000176 5.5e-06 56.6 133 27.8
THA.LOC104803323 Tarenaya hassleriana HOM05D000230 ORTHO05D000176 5.5e-06 56.6 122 27.0


User provided reference genes

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