Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G097800 Carya illinoinensis HOM05D006814 ORTHO05D008613 4.3e-175 617.8 304 100.0
CiPaw.11G096600 Carya illinoinensis HOM05D006814 ORTHO05D008613 2.0e-172 609.0 304 97.7
Cfa012484 Carpinus fangiana HOM05D006814 ORTHO05D008613 9.0e-165 583.6 304 92.8
CSS0047525 Camellia sinensis var. sinensis HOM05D006814 ORTHO05D008613 5.6e-159 564.3 303 89.8
Potri.001G139100 Populus trichocarpa HOM05D006814 ORTHO05D008613 1.3e-158 563.1 304 89.8
Hma1.2p1_0586F.1_g183880 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 1.6e-158 562.8 303 90.1
Sabra01G0108000 Salix brachista HOM05D006814 ORTHO05D008613 6.2e-158 560.8 304 88.8
Thecc.03G307100 Theobroma cacao HOM05D006814 ORTHO05D008613 1.8e-157 559.3 303 88.8
Ciclev10032236m.g Citrus clementina HOM05D006814 ORTHO05D008613 3.1e-157 558.5 302 87.4
Peaxi162Scf00170g01111 Petunia axillaris HOM05D006814 ORTHO05D008613 1.2e-156 556.6 303 87.1
MD11G1183600 Malus domestica HOM05D006814 ORTHO05D008613 2.6e-156 555.4 302 88.1
GSVIVG01013112001 Vitis vinifera HOM05D006814 ORTHO05D008613 5.8e-156 554.3 296 89.2
Manes.02G107600 Manihot esculenta HOM05D006814 ORTHO05D008613 1.0e-155 553.5 304 86.5
Nitab4.5_0000685g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 2.9e-155 552.0 303 87.1
PGSC0003DMG400014801 Solanum tuberosum HOM05D006814 ORTHO05D008613 4.9e-155 551.2 303 86.8
TAR629G1931 Trochodendron aralioides HOM05D006814 ORTHO05D008613 4.9e-155 551.2 303 87.8
Atru.chr6.1626 Acer truncatum HOM05D006814 ORTHO05D008613 6.5e-155 550.8 304 88.5
Rhsim11G0018900 Rhododendron simsii HOM05D006814 ORTHO05D008613 1.9e-154 549.3 297 88.2
RcHm_v2.0_Chr7g0211071 Rosa chinensis HOM05D006814 ORTHO05D008613 5.5e-154 547.7 304 86.5
Actinidia03355 Actinidia chinensis HOM05D006814 ORTHO05D008613 7.1e-154 547.4 303 86.8
FAN04G0609 Fragaria x ananassa HOM05D006814 ORTHO05D008613 7.1e-154 547.4 307 85.7
FAN08G0276 Fragaria x ananassa HOM05D006814 ORTHO05D008613 7.1e-154 547.4 307 85.7
Solyc08g076610.4 Solanum lycopersicum HOM05D006814 ORTHO05D008613 7.1e-154 547.4 303 86.1
Gohir.A08G154800 Gossypium hirsutum HOM05D006814 ORTHO05D008613 1.6e-153 546.2 298 87.9
FAN18G2202 Fragaria x ananassa HOM05D006814 ORTHO05D008613 2.1e-153 545.8 307 85.3
Cc08_g03190 Coffea canephora HOM05D006814 ORTHO05D008613 4.6e-153 544.7 306 85.6
FvH4_5g22650 Fragaria vesca HOM05D006814 ORTHO05D008613 4.6e-153 544.7 307 85.0
Sopen08g025160 Solanum pennellii HOM05D006814 ORTHO05D008613 4.6e-153 544.7 303 85.8
FAN18G0582 Fragaria x ananassa HOM05D006814 ORTHO05D008613 6.0e-153 544.3 307 85.0
Duzib205G0392 Durio zibethinus HOM05D006814 ORTHO05D008613 1.0e-152 543.5 295 87.5
Gohir.D08G175300 Gossypium hirsutum HOM05D006814 ORTHO05D008613 1.3e-152 543.1 298 87.6
Lsat_1_v5_gn_3_19041 Lactuca sativa HOM05D006814 ORTHO05D008613 1.5e-151 539.7 303 85.1
Gorai.004G183200 Gossypium raimondii HOM05D006814 ORTHO05D008613 1.9e-151 539.3 298 86.9
Lj8A305G45 Lonicera japonica HOM05D006814 ORTHO05D008613 1.9e-151 539.3 304 86.5
CAN.G298.54 Capsicum annuum HOM05D006814 ORTHO05D008613 2.5e-151 538.9 304 84.9
QL12p004459 Quercus lobata HOM05D006814 ORTHO05D008613 3.3e-151 538.5 323 83.6
Aqoxy4G00304 Aquilegia oxysepala HOM05D006814 ORTHO05D008613 4.3e-151 538.1 303 85.1
MSTRG.24841 Avicennia marina HOM05D006814 ORTHO05D008613 4.3e-151 538.1 302 84.1
Hund14354 Selenicereus undatus HOM05D006814 ORTHO05D008613 1.3e-150 536.6 299 85.3
Nn1g02991 Nelumbo nucifera HOM05D006814 ORTHO05D008613 1.6e-150 536.2 303 86.5
MELO3C008839.2 Cucumis melo HOM05D006814 ORTHO05D008613 2.2e-150 535.8 297 85.9
CANSAT21G0682 Cannabis sativa HOM05D006814 ORTHO05D008613 2.8e-150 535.4 296 85.5
CsaV3_4G012030 Cucumis sativus L. HOM05D006814 ORTHO05D008613 6.3e-150 534.3 297 85.5
Cpa.g.sc87.105 Carica papaya HOM05D006814 ORTHO05D008613 8.2e-150 533.9 302 84.4
ClCG04G005520 Citrullus lanatus HOM05D006814 ORTHO05D008613 2.0e-148 529.3 314 82.2
HanXRQChr17g0538231 Helianthus annuus HOM05D006814 ORTHO05D008613 1.7e-147 526.2 303 83.5
vmacro00308 Vaccinium macrocarpon HOM05D006814 ORTHO05D008613 1.7e-147 526.2 325 80.3
AUR62007326 Chenopodium quinoa HOM05D006814 ORTHO05D008613 6.5e-147 524.2 293 85.7
HanXRQChr17g0538211 Helianthus annuus HOM05D006814 ORTHO05D008613 8.5e-147 523.9 303 83.2
TWI60G0232 Tripterygium wilfordii HOM05D006814 ORTHO05D008613 1.4e-146 523.1 300 83.0
DCAR_032083 Daucus carota HOM05D006814 ORTHO05D008613 2.5e-146 522.3 304 82.6
Oeu005300.2 Olea europaea HOM05D006814 ORTHO05D008613 2.5e-146 522.3 351 73.2
PGR031G2224 Punica granatum HOM05D006814 ORTHO05D008613 2.5e-146 522.3 299 83.6
PSO063G6077 Papaver somniferum HOM05D006814 ORTHO05D008613 2.7e-145 518.8 304 80.9
COL.COLO4_16971 Corchorus olitorius HOM05D006814 ORTHO05D008613 1.0e-144 516.9 279 89.2
ECA246G4850 Erigeron canadensis HOM05D006814 ORTHO05D008613 1.8e-144 516.2 315 79.0
Sc07g0008590 Simmondsia chinensis HOM05D006814 ORTHO05D008613 3.0e-144 515.4 300 83.7
Migut.A01081 Erythranthe guttata HOM05D006814 ORTHO05D008613 3.3e-143 511.9 303 80.9
Carub.0007s2360 Capsella rubella HOM05D006814 ORTHO05D008613 6.9e-141 504.2 298 79.2
AUR62018677 Chenopodium quinoa HOM05D006814 ORTHO05D008613 4.5e-140 501.5 296 82.4
Aa31LG6G500 Aethionema arabicum HOM05D006814 ORTHO05D008613 2.2e-139 499.2 298 79.2
AL7G36810 Arabidopsis lyrata HOM05D006814 ORTHO05D008613 2.2e-139 499.2 298 78.5
CARHR224480 Cardamine hirsuta HOM05D006814 ORTHO05D008613 2.9e-139 498.8 300 78.0
Ca_26271_v3 Cicer arietinum L. HOM05D006814 ORTHO05D008613 2.9e-139 498.8 296 78.7
Thhalv10025847m.g Eutrema salsugineum HOM05D006814 ORTHO05D008613 8.5e-139 497.3 298 78.2
Lj3g0020867 Lotus japonicus HOM05D006814 ORTHO05D008613 1.9e-138 496.1 298 78.2
EL10Ac5g12048 Beta vulgaris HOM05D006814 ORTHO05D008613 3.2e-138 495.4 302 80.8
BcaNung04035 Brassica carinata HOM05D006814 ORTHO05D008613 3.2e-138 495.4 295 79.3
A03p50690 Brassica napus HOM05D006814 ORTHO05D008613 3.2e-138 495.4 295 79.3
THA.LOC104798334 Tarenaya hassleriana HOM05D006814 ORTHO05D008613 3.2e-138 495.4 298 78.9
SGA_v2.0_scaffold36G14306 Striga asiatica HOM05D006814 ORTHO05D008613 4.2e-138 495.0 337 74.8
arahy.Tifrunner.gnm1.ann1.DD0PLV Arachis hypogaea HOM05D006814 ORTHO05D008613 5.5e-138 494.6 304 74.7
TPR.G8183 Trifolium pratense HOM05D006814 ORTHO05D008613 5.5e-138 494.6 293 79.2
BraA03t14161Z Brassica rapa HOM05D006814 ORTHO05D008613 9.4e-138 493.8 295 79.0
Prupe.4G270400 Prunus persica HOM05D006814 ORTHO05D008613 9.4e-138 493.8 264 89.4
BcaC06g33591 Brassica carinata HOM05D006814 ORTHO05D008613 1.6e-137 493.0 295 79.0
BolC7t45420H Brassica oleracea HOM05D006814 ORTHO05D008613 1.6e-137 493.0 295 79.0
Medtr8g447310 Medicago truncatula HOM05D006814 ORTHO05D008613 2.7e-137 492.3 296 77.4
arahy.Tifrunner.gnm1.ann1.S7AV19 Arachis hypogaea HOM05D006814 ORTHO05D008613 1.8e-136 489.6 304 73.4
VMungo0251G2608 Vigna mungo HOM05D006814 ORTHO05D008613 3.0e-136 488.8 297 76.8
CDE11G0551 Ceratophyllum demersum HOM05D006814 ORTHO05D008613 3.9e-136 488.4 304 76.0
Sp7g16350 Schrenkiella parvula HOM05D006814 ORTHO05D008613 5.1e-136 488.0 298 77.2
Glyma.20G095300 Glycine max HOM05D006814 ORTHO05D008613 6.7e-136 487.6 297 77.8
Haze_08181 Corylus avellana HOM05D006814 ORTHO05D008613 1.7e-134 483.0 302 81.1
Psat4g131760 Pisum sativum HOM05D006814 ORTHO05D008613 8.2e-134 480.7 296 76.4
C07p49120 Brassica napus HOM05D006814 ORTHO05D008613 2.4e-133 479.2 320 72.8
Aa31LG9G8590 Aethionema arabicum HOM05D006814 ORTHO05D008613 2.5e-130 469.2 298 74.8
ATR0772G225 Amborella trichopoda HOM05D006814 ORTHO05D008613 5.5e-130 468.0 297 74.7
Lalb_Chr05g0228761 Lupinus albus HOM05D006814 ORTHO05D008613 1.2e-129 466.8 292 74.3
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 1.5e-127 459.9 304 74.0
Zm00001eb269700 Zea mays HOM05D006814 ORTHO05D008613 8.2e-126 454.1 298 70.8
Os06g0132600 Oryza sativa ssp. japonica HOM05D006814 ORTHO05D008613 3.1e-125 452.2 265 79.6
SEGI_31198 Sequoiadendron giganteum HOM05D006814 ORTHO05D008613 9.1e-117 424.1 303 67.3
Sed0016076 Sechium edule HOM05D006814 ORTHO05D008613 6.3e-110 401.4 221 85.1
Pp3c10_20230 Physcomitrium patens HOM05D006814 ORTHO05D008613 3.3e-106 389.0 288 62.5
AagrBONN_evm.TU.Sc2ySwM_228.215 Anthoceros agrestis HOM05D006814 ORTHO05D008613 5.7e-103 378.3 302 60.6
Dinv28983 Davidia involucrata HOM05D006814 ORTHO05D008613 3.7e-102 375.6 206 87.9
Mapoly0097s0033 Marchantia polymorpha HOM05D006814 ORTHO05D008613 7.0e-101 371.3 291 63.9
Eucgr.D02215 Eucalyptus grandis HOM05D006814 ORTHO05D008613 8.0e-97 357.8 204 83.3
SMO358G0599 Selaginella moellendorffii HOM05D006814 ORTHO05D008613 6.8e-96 354.8 287 61.0
Phvul.003G283200 Phaseolus vulgaris HOM05D006814 ORTHO05D008613 6.2e-89 331.6 196 78.6
AT4G17760 Arabidopsis thaliana HOM05D006814 ORTHO05D008613 3.6e-81 305.8 187 77.5
Nitab4.5_0025014g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 9.2e-77 291.2 167 83.2
CBR_g3124 Chara braunii HOM05D006814 ORTHO05D008613 7.3e-74 281.6 259 54.4
SalBow6G3153 Salvia bowleyana HOM05D006814 ORTHO05D008613 9.3e-69 264.6 145 86.2
GSVIVG01003310001 Vitis vinifera HOM05D006814 ORTHO05D008613 4.4e-63 245.7 151 75.5
DCAR_021700 Daucus carota HOM05D006814 ORTHO05D013862 1.4e-56 224.2 152 73.7
Hma1.2p1_0572F.1_g181150 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 4.0e-56 222.6 142 80.3
CAN.G298.53 Capsicum annuum HOM05D006814 ORTHO05D008613 6.5e-46 188.7 115 80.0
CAN.G298.50 Capsicum annuum HOM05D006814 ORTHO05D008613 1.8e-43 180.6 106 82.1
CAN.G2435.1 Capsicum annuum HOM05D006814 ORTHO05D008613 8.2e-33 145.2 89 79.8
Actinidia25984 Actinidia chinensis HOM05D006814 ORTHO05D008613 4.1e-32 142.9 79 89.9
Hma1.2p1_0586F.1_g183890 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 1.0e-30 138.3 118 61.9
Cre03.g162250 Chlamydomonas reinhardtii HOM05D006814 ORTHO05D008613 1.8e-27 127.5 335 26.6
Actinidia25985 Actinidia chinensis HOM05D006814 ORTHO05D008613 2.3e-27 127.1 72 84.7
Glyma.10G145666 Glycine max HOM05D006814 ORTHO05D008613 3.9e-27 126.3 73 80.8
MCO03G144 Micromonas commoda HOM05D006814 ORTHO05D008613 1.8e-24 117.5 296 27.4
PRCOL_00006064 Prasinoderma coloniale HOM05D006814 ORTHO05D008613 2.4e-24 117.1 329 27.1
EL10As1g23070 Beta vulgaris HOM05D006814 ORTHO05D088401 6.1e-12 75.9 41 87.8


User provided reference genes

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