Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.5e-251 872.5 473 100.0
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 2.4e-180 636.0 473 74.6
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 9.3e-177 624.0 531 70.4
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 1.7e-173 613.2 511 70.5
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 3.1e-164 582.4 558 64.3
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 2.4e-148 529.6 501 63.3
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 4.1e-140 502.3 561 55.3
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 1.2e-139 500.7 561 57.4
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 5.0e-138 495.4 506 56.3
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 4.2e-137 492.3 612 51.8
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 5.5e-137 491.9 560 53.8
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 4.0e-135 485.7 559 55.6
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 7.5e-134 481.5 499 60.1
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 3.5e-131 472.6 556 53.4
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 1.3e-130 470.7 619 50.9
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 5.0e-130 468.8 517 56.7
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 1.9e-129 466.8 488 60.2
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 6.1e-128 461.8 549 54.5
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 8.0e-128 461.5 551 54.6
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 1.0e-127 461.1 595 50.8
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 1.0e-127 461.1 564 52.0
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 1.4e-127 460.7 467 61.9
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 8.9e-127 458.0 595 51.9
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 1.5e-126 457.2 517 56.1
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 1.7e-125 453.8 538 55.9
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 4.1e-124 449.1 507 56.4
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 4.1e-124 449.1 549 54.6
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 5.4e-124 448.7 537 53.4
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 7.0e-124 448.4 540 53.0
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 1.6e-123 447.2 542 51.7
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 3.0e-122 443.0 502 56.6
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 1.1e-121 441.0 498 59.2
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 1.5e-121 440.7 480 57.7
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 4.3e-121 439.1 595 50.1
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 5.6e-121 438.7 517 52.0
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 1.2e-120 437.6 492 53.0
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 1.2e-120 437.6 482 57.9
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 2.1e-120 436.8 580 50.2
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 2.8e-120 436.4 471 56.3
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 3.6e-120 436.0 507 56.6
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 4.7e-120 435.6 463 57.7
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 2.3e-119 433.3 587 49.4
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 2.3e-119 433.3 617 47.3
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 2.3e-119 433.3 447 54.8
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 1.2e-118 431.0 504 53.4
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 7.5e-118 428.3 574 50.7
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 9.8e-118 427.9 609 46.6
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 2.2e-117 426.8 553 49.5
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 3.5e-115 419.5 482 54.6
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 4.6e-115 419.1 537 51.6
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 7.8e-115 418.3 567 48.9
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 1.0e-114 417.9 539 51.8
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 2.3e-114 416.8 587 48.9
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 1.1e-113 414.5 571 46.1
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 3.3e-113 412.9 563 49.4
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 4.3e-113 412.5 566 47.9
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 1.2e-110 404.4 602 45.3
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 4.4e-110 402.5 506 54.0
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 5.8e-110 402.1 658 44.5
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.2e-107 394.4 583 44.8
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 1.6e-107 394.0 506 53.2
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 6.0e-107 392.1 571 44.5
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 1.3e-106 391.0 562 47.2
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 1.7e-106 390.6 560 46.6
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 2.3e-106 390.2 520 49.2
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 5.1e-106 389.0 562 46.8
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 6.6e-106 388.7 526 50.0
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 1.1e-105 387.9 520 48.7
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.5e-105 387.5 505 52.5
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 1.9e-105 387.1 547 50.1
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 7.3e-105 385.2 591 45.2
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 9.5e-105 384.8 560 46.2
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 9.5e-105 384.8 565 45.3
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 9.5e-105 384.8 491 52.1
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 9.5e-105 384.8 491 52.1
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 2.8e-104 383.3 480 54.0
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 3.6e-104 382.9 519 50.9
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 4.7e-104 382.5 564 46.3
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 3.1e-103 379.8 532 49.6
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 2.6e-102 376.7 563 47.1
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 5.8e-102 375.6 460 50.4
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 7.6e-102 375.2 548 46.0
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 2.9e-101 373.2 547 47.9
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 8.4e-101 371.7 544 44.1
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 2.8e-96 356.7 224 79.9
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 2.0e-94 350.5 591 43.5
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 2.0e-94 350.5 570 43.5
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 2.9e-93 346.7 563 44.8
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 6.6e-90 335.5 490 43.9
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 2.8e-88 330.1 469 50.5
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 5.3e-87 325.9 481 43.7
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 3.2e-84 316.6 269 62.1
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 7.1e-84 315.5 597 40.9
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.2e-83 314.7 528 41.1
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 7.4e-81 305.4 375 52.3
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 1.2e-75 288.1 644 36.8
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 8.7e-74 282.0 257 61.1
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 4.3e-73 279.6 190 74.7
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 2.9e-69 266.9 218 62.8
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 3.5e-67 260.0 148 82.4
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 8.7e-66 255.4 160 78.1
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 1.1e-65 255.0 221 62.4
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 4.3e-65 253.1 235 60.4
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.3e-64 251.5 149 79.9
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 6.3e-64 249.2 583 35.0
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 2.0e-62 244.2 157 75.8
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 3.4e-62 243.4 598 34.6
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 7.7e-62 242.3 257 52.9
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 1.0e-61 241.9 179 67.6
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 2.9e-61 240.4 152 75.7
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 8.5e-61 238.8 587 35.1
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.1e-60 238.4 169 69.2
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 4.2e-60 236.5 168 69.0
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 4.6e-59 233.0 221 55.7
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 1.1e-57 228.4 486 44.0
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 3.1e-55 220.3 159 71.7
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 3.1e-55 220.3 149 69.8
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 5.3e-55 219.5 227 54.2
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 5.3e-55 219.5 221 54.3
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 9.1e-55 218.8 411 43.3
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 9.1e-55 218.8 296 51.4
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 1.7e-53 214.5 113 87.6
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 3.8e-53 213.4 113 85.8
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 3.6e-51 206.8 155 80.6
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 3.1e-47 193.7 332 44.6
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.3e-45 188.3 382 41.9
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.3e-45 188.3 382 41.9
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 2.2e-45 187.6 436 35.6
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.6e-38 164.9 86 83.7
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.6e-38 164.9 86 83.7
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 3.8e-37 160.2 203 45.3
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 1.2e-30 138.7 138 67.4
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 1.6e-30 138.3 433 31.9
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 2.0e-30 137.9 149 63.8
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 3.6e-27 127.1 318 38.7
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 4.0e-26 123.6 154 50.6
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 2.6e-25 120.9 213 39.0
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 4.8e-24 116.7 98 60.2
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 2.0e-22 111.3 216 39.4
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 1.6e-19 101.7 89 67.4
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 2.1e-19 101.3 57 75.4
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 2.1e-19 101.3 353 31.7
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 1.4e-18 98.6 255 39.6
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 7.5e-17 92.8 66 62.1
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 9.8e-17 92.4 108 52.8
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 1.1e-15 89.0 78 65.4
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 4.1e-15 87.0 133 43.6
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 1.5e-12 78.6 139 35.3
TPR.G17657 Trifolium pratense HOM05D004380 ORTHO05D005134 6.1e-11 73.2 102 52.9
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 2.0e-09 68.2 64 57.8
arahy.Tifrunner.gnm1.ann1.FR68MS Arachis hypogaea HOM05D005435 ORTHO05D005134 4.9e-08 63.5 52 71.2
Cpa.g.c30383 Carica papaya HOM05D004380 ORTHO05D005134 7.8e-06 56.2 60 58.3


User provided reference genes

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