Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 0.0e+00 2007.6 1023 100.0
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 0.0e+00 1611.3 1022 80.6
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 0.0e+00 1511.1 1235 65.7
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 0.0e+00 1411.4 1022 70.5
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 1409.0 1018 71.0
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 0.0e+00 1379.8 1022 70.1
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1378.2 1011 70.1
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 1362.4 1018 68.1
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 1361.3 1007 69.2
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 1359.7 1010 68.7
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 0.0e+00 1357.0 1019 70.4
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 0.0e+00 1342.8 996 69.2
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 0.0e+00 1322.0 1016 68.0
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 0.0e+00 1315.1 1020 68.0
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 0.0e+00 1304.7 1044 66.1
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 0.0e+00 1280.4 973 67.8
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 0.0e+00 1260.7 1016 65.6
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1253.4 1016 65.2
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1239.6 1028 64.0
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1234.9 998 64.9
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1227.6 998 64.6
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 0.0e+00 1221.5 1019 62.9
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1214.1 1017 63.5
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 0.0e+00 1209.9 1003 63.3
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 0.0e+00 1205.7 1011 64.4
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 0.0e+00 1202.6 1010 64.3
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1199.5 1017 61.9
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1197.6 994 62.6
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 1196.4 1001 62.8
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 0.0e+00 1194.1 1007 63.5
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 0.0e+00 1191.0 1007 63.4
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 1189.1 990 63.0
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 1187.6 1016 62.1
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1185.6 1003 62.7
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 1182.2 1002 63.0
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1154.8 1051 59.2
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 0.0e+00 1153.7 1023 59.4
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 0.0e+00 1149.8 1020 60.4
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 0.0e+00 1146.0 1008 60.9
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 0.0e+00 1136.7 1012 59.4
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 1135.2 1018 59.4
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1127.5 1013 58.9
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 0.0e+00 1124.0 991 60.6
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1121.7 891 66.1
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1116.3 1003 60.1
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1115.9 1013 58.5
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 0.0e+00 1113.2 991 60.1
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 1110.5 1003 58.7
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1109.4 1019 59.0
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 0.0e+00 1109.0 1054 57.3
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1108.2 1021 58.9
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 0.0e+00 1107.4 1007 59.1
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1106.7 1022 59.2
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 0.0e+00 1104.7 1018 58.4
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 0.0e+00 1100.5 1042 56.8
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 0.0e+00 1097.4 1018 58.5
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 0.0e+00 1095.5 1018 58.3
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 0.0e+00 1093.6 1044 58.0
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 0.0e+00 1088.9 1021 58.5
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 0.0e+00 1088.9 1019 58.5
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 0.0e+00 1085.1 1017 57.3
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 0.0e+00 1084.3 1019 58.7
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 0.0e+00 1083.9 1022 55.5
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 7.0e-312 1073.9 1018 56.0
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 7.2e-307 1057.4 1008 56.0
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 1.6e-306 1056.2 1014 57.4
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 1.6e-306 1056.2 995 57.7
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 1.3e-303 1046.6 1014 56.4
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 1.1e-294 1016.9 1020 55.1
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 2.2e-287 992.6 882 61.3
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 2.2e-284 982.6 1027 54.0
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 2.9e-284 982.2 1016 53.2
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 2.1e-282 976.1 1028 52.9
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 4.1e-278 961.8 995 53.7
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 4.0e-273 945.3 978 52.8
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 1.2e-269 933.7 786 62.0
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 4.1e-262 908.7 769 62.2
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 5.0e-244 848.6 803 57.3
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 2.6e-240 836.3 1036 47.2
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 3.6e-226 789.3 754 56.4
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 2.1e-218 763.5 753 56.0
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 7.1e-214 748.4 618 64.9
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.7e-213 746.5 685 58.7
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 3.5e-213 746.1 787 54.1
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 4.6e-213 745.7 856 50.2
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 6.7e-212 741.9 739 55.5
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.3e-194 684.5 610 59.7
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 3.2e-182 643.3 727 49.7
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 5.9e-168 595.9 478 68.0
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 9.7e-163 578.6 983 36.3
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 7.7e-160 568.9 528 59.5
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 1.2e-139 501.9 347 78.4
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 2.0e-136 491.1 335 76.7
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 3.6e-117 427.2 505 47.7
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 2.1e-112 411.4 312 69.2
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 1.5e-102 378.6 415 50.4
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.8e-95 355.1 438 44.5
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 1.5e-70 272.3 225 62.2
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 1.2e-67 262.7 230 63.0
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 2.0e-67 261.9 390 42.8
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 5.9e-67 260.4 220 61.4
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 6.5e-58 230.3 292 43.5
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 3.2e-57 228.0 137 79.6
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 2.8e-53 214.9 400 37.0
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 5.3e-52 210.7 207 58.5
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 1.3e-50 206.1 142 71.1
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 1.4e-47 196.1 128 76.6
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.8e-44 185.7 154 66.2
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 7.7e-43 180.3 380 35.0
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 1.6e-35 156.0 211 40.3
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 2.0e-35 155.6 166 53.6
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 5.9e-35 154.1 140 59.3
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 3.0e-31 141.7 130 58.5
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 2.8e-29 135.2 140 52.9
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 1.1e-28 133.3 90 72.2
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 1.1e-28 133.3 90 73.3
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 1.1e-28 133.3 79 78.5
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 2.4e-28 132.1 113 59.3
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 5.4e-28 131.0 130 53.8
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.7e-26 125.9 82 74.4
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 5.0e-26 124.4 82 74.4
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 6.6e-26 124.0 82 74.4
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 8.9e-23 113.6 74 73.0
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 5.8e-22 110.9 83 65.1
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 9.8e-22 110.2 274 27.0
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 1.9e-20 105.9 463 25.9
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 2.4e-20 105.5 83 56.6
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.0e-19 102.4 125 47.2
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 4.6e-19 101.3 508 21.9
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 3.3e-17 95.1 171 37.4
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 3.6e-16 91.7 71 67.6
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 6.8e-15 87.4 71 66.2
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 2.0e-14 85.9 132 43.2
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 4.4e-14 84.7 102 47.1
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 7.5e-14 84.0 62 66.1
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 6.4e-13 80.9 53 77.4
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 6.4e-13 80.9 53 77.4
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 1.9e-12 79.3 52 76.9
arahy.Tifrunner.gnm1.ann1.AZ80GT Arachis hypogaea HOM05D000826 ORTHO05D006448 1.2e-11 76.6 49 77.6
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 1.0e-10 73.6 62 59.7
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.3e-10 73.2 77 45.5
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 2.5e-09 68.9 242 25.6
CSS0024237 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 5.6e-09 67.8 136 34.6
CAN.G466.3 Capsicum annuum HOM05D003893 ORTHO05D005167 1.2e-08 66.6 63 52.4
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 4.7e-08 64.7 99 32.3
TAR369G0820 Trochodendron aralioides HOM05D049058 ORTHO05D005167 8.9e-07 60.5 67 52.2
TAR369G0648 Trochodendron aralioides HOM05D049058 ORTHO05D005167 2.0e-06 59.3 44 68.2
BcaNung07323 Brassica carinata HOM05D003893 ORTHO05D005167 4.4e-06 58.2 59 52.5
Psat1g032760 Pisum sativum HOM05D003893 ORTHO05D005167 7.5e-06 57.4 48 58.3


User provided reference genes

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