Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 3.7e-123 444.9 224 100.0
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 5.6e-79 298.1 296 56.1
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 1.1e-63 247.3 294 48.0
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 7.3e-63 244.6 299 47.2
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 2.3e-61 239.6 299 45.8
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 6.8e-61 238.0 298 45.3
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 1.2e-60 237.3 300 45.7
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 1.6e-57 226.9 295 43.1
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 1.6e-57 226.9 299 44.5
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 3.5e-57 225.7 293 44.4
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 4.6e-57 225.3 306 45.4
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 7.8e-57 224.6 281 43.4
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 1.3e-56 223.8 299 42.8
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 3.0e-56 222.6 299 44.5
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 1.9e-55 219.9 303 41.3
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 3.3e-55 219.2 294 42.5
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 3.3e-55 219.2 294 43.2
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 3.3e-55 219.2 294 42.5
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 9.6e-55 217.6 295 42.7
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 1.2e-54 217.2 297 41.8
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 1.1e-53 214.2 297 43.1
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 1.4e-53 213.8 295 42.4
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 1.4e-53 213.8 297 41.8
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 1.4e-53 213.8 299 42.1
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 4.0e-53 212.2 302 42.4
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 8.9e-53 211.1 296 40.5
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 1.5e-52 210.3 296 40.9
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 1.5e-52 210.3 297 41.8
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 3.4e-52 209.1 296 40.9
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 4.4e-52 208.8 297 41.1
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 2.9e-51 206.1 297 42.4
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 2.9e-51 206.1 299 39.1
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 3.8e-51 205.7 298 39.6
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 4.9e-51 205.3 297 41.1
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 8.4e-51 204.5 296 40.5
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 1.1e-50 204.1 290 40.0
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 2.4e-50 203.0 284 40.5
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 4.2e-50 202.2 287 40.4
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 4.2e-50 202.2 296 38.9
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 7.1e-50 201.4 287 41.1
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 2.1e-49 199.9 287 39.4
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 2.7e-49 199.5 298 39.3
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 1.0e-48 197.6 304 40.1
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 1.3e-48 197.2 296 40.5
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 3.0e-48 196.1 290 39.0
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 3.0e-48 196.1 290 39.0
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 8.7e-48 194.5 287 42.2
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 8.7e-48 194.5 288 39.6
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 1.5e-47 193.7 285 40.0
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 4.3e-47 192.2 290 39.0
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 5.6e-47 191.8 270 40.7
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 1.6e-46 190.3 219 45.7
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 2.1e-46 189.9 287 38.3
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 2.8e-46 189.5 299 36.8
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 3.6e-46 189.1 287 38.7
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 4.8e-46 188.7 310 35.5
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 4.8e-46 188.7 287 38.0
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 6.2e-46 188.3 297 38.0
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 3.1e-45 186.0 225 48.9
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 9.0e-45 184.5 225 46.7
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 3.4e-44 182.6 297 39.1
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 2.2e-43 179.9 290 38.3
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 6.4e-43 178.3 290 34.8
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 1.1e-42 177.6 311 34.7
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 1.1e-42 177.6 311 34.7
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 1.1e-42 177.6 305 37.7
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 2.4e-42 176.4 349 36.1
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 7.1e-42 174.9 291 34.7
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 2.7e-41 172.9 319 34.5
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 3.5e-41 172.6 280 36.8
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 7.9e-41 171.4 302 37.1
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 1.7e-40 170.2 307 34.9
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 6.6e-40 168.3 311 33.4
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 7.4e-39 164.9 260 38.8
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 2.8e-38 162.9 291 34.0
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 3.1e-37 159.5 299 32.4
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 1.2e-36 157.5 97 76.3
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 7.9e-33 144.8 292 36.3
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 3.0e-32 142.9 225 36.4
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 5.3e-29 132.1 228 33.3
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.4e-26 124.0 304 29.6
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.3e-22 110.9 177 39.0
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 1.8e-21 107.1 96 47.9
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 1.8e-21 107.1 234 29.9
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 1.8e-21 107.1 221 32.6
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 1.6e-14 84.0 158 36.1
C01p32750 Brassica napus HOM05D003893 ORTHO05D017260 9.0e-13 78.2 152 36.2
BcaC09g49809 Brassica carinata HOM05D003893 ORTHO05D017260 3.8e-11 72.8 96 42.7
Ah.07g199150 Amaranthus hybridus HOM05D003893 ORTHO05D017260 1.6e-09 67.4 67 49.3
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 1.6e-09 67.4 126 34.9
A01p25860 Brassica napus HOM05D003893 ORTHO05D017260 2.7e-09 66.6 85 45.9
BcaC05g26842 Brassica carinata HOM05D003893 ORTHO05D021800 7.9e-09 65.1 137 33.6
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 7.4e-07 58.5 98 29.6
BolC5t31436H Brassica oleracea HOM05D003893 ORTHO05D021800 3.7e-06 56.2 53 45.3


User provided reference genes

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