Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 4.2e-253 877.5 425 100.0
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 2.9e-193 678.7 425 74.8
QL09p016707 Quercus lobata HOM05D005601 ORTHO05D007265 2.4e-192 675.6 440 75.5
QL04p090699 Quercus lobata HOM05D005601 ORTHO05D007265 9.2e-192 673.7 440 75.2
CANSAT56G2459 Cannabis sativa HOM05D005601 ORTHO05D007265 5.1e-190 667.9 431 72.9
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 8.7e-190 667.2 435 72.9
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 3.3e-189 665.2 427 74.5
CSS0009872 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 2.8e-188 662.1 425 72.7
CSS0045419 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 2.8e-188 662.1 425 72.7
MELO3C012601.2 Cucumis melo HOM05D005601 ORTHO05D007265 2.8e-188 662.1 430 74.0
CsaV3_7G022950 Cucumis sativus L. HOM05D005601 ORTHO05D007265 4.0e-187 658.3 430 73.0
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 1.2e-186 656.8 458 69.2
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 2.2e-185 652.5 425 72.0
Manes.14G007400 Manihot esculenta HOM05D005601 ORTHO05D007265 1.9e-184 649.4 426 72.5
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 1.7e-182 642.9 426 72.3
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 1.6e-180 636.3 431 70.8
Peaxi162Scf00452g00334 Petunia axillaris HOM05D005601 ORTHO05D007265 2.0e-178 629.4 424 69.1
Ciclev10006846m.g Citrus clementina HOM05D005601 ORTHO05D007265 9.9e-178 627.1 419 71.4
Rhsim06G0242900 Rhododendron simsii HOM05D005601 ORTHO05D007265 1.3e-177 626.7 489 62.4
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 4.9e-177 624.8 425 69.2
Sopen07g034790 Solanum pennellii HOM05D005601 ORTHO05D007265 4.9e-177 624.8 425 68.7
Solyc07g066640.3 Solanum lycopersicum HOM05D005601 ORTHO05D007265 2.4e-176 622.5 425 68.5
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 5.4e-176 621.3 435 68.7
vmacro11692 Vaccinium macrocarpon HOM05D005601 ORTHO05D007265 1.6e-175 619.8 481 62.6
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 2.7e-175 619.0 425 70.4
PGSC0003DMG400022116 Solanum tuberosum HOM05D005601 ORTHO05D007265 1.0e-174 617.1 426 68.1
Nitab4.5_0000029g0250 Nicotiana tabacum HOM05D005601 ORTHO05D007265 3.9e-174 615.1 415 68.9
Nitab4.5_0006109g0020 Nicotiana tabacum HOM05D005601 ORTHO05D007265 8.7e-174 614.0 424 67.2
CAN.G943.56 Capsicum annuum HOM05D005601 ORTHO05D007265 1.3e-172 610.1 425 66.8
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 4.8e-172 608.2 441 66.0
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 4.0e-171 605.1 431 67.5
FvH4_3g14650 Fragaria vesca HOM05D005601 ORTHO05D007265 1.5e-170 603.2 434 65.9
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 4.5e-170 601.7 424 65.1
RcHm_v2.0_Chr5g0024141 Rosa chinensis HOM05D005601 ORTHO05D007265 7.6e-170 600.9 431 66.4
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 2.2e-169 599.4 432 65.0
Lj2A13G19 Lonicera japonica HOM05D005601 ORTHO05D007265 7.1e-168 594.3 423 66.4
Thecc.07G184900 Theobroma cacao HOM05D005601 ORTHO05D007265 1.8e-166 589.7 426 67.4
FAN11G1412 Fragaria x ananassa HOM05D005601 ORTHO05D007265 3.0e-166 589.0 453 62.9
MD10G1210800 Malus domestica HOM05D005601 ORTHO05D007265 3.0e-166 589.0 433 64.4
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.1e-165 587.0 427 66.0
SGA_v2.0_scaffold7G03617 Striga asiatica HOM05D005601 ORTHO05D007265 2.5e-165 585.9 434 65.0
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 3.3e-165 585.5 426 64.6
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 7.4e-165 584.3 426 64.3
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 7.4e-165 584.3 426 64.3
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 1.6e-164 583.2 426 64.3
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 3.1e-163 578.9 425 64.2
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 3.1e-163 578.9 426 63.8
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 3.1e-163 578.9 426 63.8
MSTRG.7080 Avicennia marina HOM05D005601 ORTHO05D007265 2.0e-162 576.2 428 63.3
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 2.0e-162 576.2 425 63.5
PSO675G6728 Papaver somniferum HOM05D005601 ORTHO05D007265 2.0e-162 576.2 431 64.7
PGR031G2718 Punica granatum HOM05D005601 ORTHO05D007265 2.0e-162 576.2 464 60.6
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 2.6e-162 575.9 425 63.1
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 1.3e-161 573.5 374 73.0
Lalb_Chr25g0284511 Lupinus albus HOM05D005601 ORTHO05D007265 1.9e-160 569.7 428 64.3
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 5.5e-160 568.2 425 63.1
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 7.1e-160 567.8 416 63.7
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 1.6e-159 566.6 426 63.4
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 4.6e-159 565.1 429 62.5
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 7.9e-159 564.3 425 62.4
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 3.9e-158 562.0 425 63.1
Lalb_Chr20g0108481 Lupinus albus HOM05D005601 ORTHO05D007265 6.7e-158 561.2 429 63.6
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 6.7e-158 561.2 456 59.6
Gorai.002G109700 Gossypium raimondii HOM05D005601 ORTHO05D007265 1.9e-157 559.7 425 64.5
SalBow8G4673 Salvia bowleyana HOM05D005601 ORTHO05D007265 9.7e-157 557.4 416 62.5
Psat1g014320 Pisum sativum HOM05D005601 ORTHO05D007265 2.8e-156 555.8 432 61.6
DCAR_016842 Daucus carota HOM05D005601 ORTHO05D000532 4.1e-155 552.0 431 60.1
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 7.6e-154 547.7 429 63.4
TPR.G22999 Trifolium pratense HOM05D005601 ORTHO05D007265 9.7e-149 530.8 442 58.1
Gorai.013G145200 Gossypium raimondii HOM05D005601 ORTHO05D007265 1.8e-147 526.6 423 60.0
Gohir.A13G125400 Gossypium hirsutum HOM05D005601 ORTHO05D007265 9.1e-147 524.2 423 59.6
Oeu019720.3 Olea europaea HOM05D005601 ORTHO05D007265 1.5e-146 523.5 435 57.7
Gohir.D13G129200 Gossypium hirsutum HOM05D005601 ORTHO05D007265 3.4e-146 522.3 423 59.6
FAN21G2538 Fragaria x ananassa HOM05D005601 ORTHO05D007265 9.4e-144 514.2 431 58.2
Cc05_g16460 Coffea canephora HOM05D005601 ORTHO05D007265 3.7e-140 502.3 351 67.2
Glyma.08G165100 Glycine max HOM05D005601 ORTHO05D007265 6.3e-140 501.5 425 58.1
Sabra08G0062400 Salix brachista HOM05D005601 ORTHO05D007265 6.3e-140 501.5 465 58.5
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 7.0e-139 498.0 431 57.1
Zm00001eb207280 Zea mays HOM05D005601 ORTHO05D007265 1.2e-138 497.3 430 56.5
MBI02_g08257_MAGBIO Magnolia biondii HOM05D005601 ORTHO05D007265 3.7e-132 475.7 346 66.2
arahy.Tifrunner.gnm1.ann1.5WL8RC Arachis hypogaea HOM05D005601 ORTHO05D007265 6.3e-132 474.9 385 58.7
Ca_03553_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 9.4e-128 461.1 427 53.2
Ca_29556_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 9.4e-128 461.1 427 53.2
SMO196G0059 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.8e-123 446.8 406 51.2
Gohir.D01G084000 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.9e-120 436.8 348 62.6
SMO137G0068 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 3.2e-120 436.0 419 49.4
Gohir.A01G099600 Gossypium hirsutum HOM05D005601 ORTHO05D007265 6.8e-118 428.3 335 62.7
Mapoly0008s0010 Marchantia polymorpha HOM05D005601 ORTHO05D007265 9.5e-104 381.3 448 41.5
Pp3c5_22590 Physcomitrium patens HOM05D005601 ORTHO05D007265 1.2e-103 380.9 506 40.1
CBR_g32054 Chara braunii HOM05D005601 ORTHO05D007265 1.6e-103 380.6 427 42.6
AagrBONN_evm.TU.Sc2ySwM_117.1218 Anthoceros agrestis HOM05D005601 ORTHO05D007265 3.4e-101 372.9 412 44.4
Haze_07789 Corylus avellana HOM05D005601 ORTHO05D007265 9.8e-93 344.7 179 90.5
unitig_26.g10063 Utricularia gibba HOM05D005601 ORTHO05D007265 2.5e-88 330.1 251 62.2
Dinv19582 Davidia involucrata HOM05D005601 ORTHO05D007265 2.0e-85 320.5 205 72.7
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 7.5e-85 318.5 385 42.9
Oeu034984.1 Olea europaea HOM05D005601 ORTHO05D007265 5.1e-81 305.8 214 65.0
Dinv19583 Davidia involucrata HOM05D005601 ORTHO05D007265 2.9e-76 290.0 186 70.4
Actinidia24664 Actinidia chinensis HOM05D005601 ORTHO05D007265 1.9e-67 260.8 185 64.9
HPP92_016685 Vanilla planifolia HOM05D005601 ORTHO05D007265 2.3e-65 253.8 186 60.8
HPP92_016686 Vanilla planifolia HOM05D005601 ORTHO05D007265 3.4e-53 213.4 158 62.0
ATR0752G040 Amborella trichopoda HOM05D005601 ORTHO05D007265 2.8e-47 193.7 147 56.5
ATR0752G225 Amborella trichopoda HOM05D005601 ORTHO05D007265 3.4e-45 186.8 128 65.6
arahy.Tifrunner.gnm1.ann1.4IME1R Arachis hypogaea HOM05D005601 ORTHO05D007265 3.4e-45 186.8 152 57.9
CSS0035233 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 7.6e-45 185.7 106 78.3
Sabra07G0054400 Salix brachista HOM05D005601 ORTHO05D007265 2.9e-44 183.7 145 64.1
Sabra07G0054100 Salix brachista HOM05D005601 ORTHO05D007265 1.1e-43 181.8 145 63.4
Sabra07G0055500 Salix brachista HOM05D005601 ORTHO05D007265 1.4e-43 181.4 144 63.9
Sabra07G0054700 Salix brachista HOM05D005601 ORTHO05D007265 3.2e-43 180.3 145 62.8
Aqoxy5G02624 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 9.7e-40 168.7 117 67.5
Sabra07G0055700 Salix brachista HOM05D005601 ORTHO05D007265 8.2e-39 165.6 126 67.5
Aqoxy4G01783 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.4e-38 164.9 117 66.7
unitig_26.g10062 Utricularia gibba HOM05D000493 ORTHO05D008479 5.0e-36 156.4 101 68.3
SEGI_07478 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 9.4e-35 152.1 120 57.5
Cc01_g09470 Coffea canephora HOM05D005601 ORTHO05D007265 1.4e-30 138.3 88 71.6
Cpa.g.sc32.54 Carica papaya HOM05D005601 ORTHO05D007265 5.9e-29 132.9 110 60.0
SEGI_07505 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 2.9e-28 130.6 108 52.8
SHI32865 Sapria himalayana HOM05D005601 ORTHO05D007265 3.2e-27 127.1 81 72.8
Sabra07G0055000 Salix brachista HOM05D005601 ORTHO05D007265 2.7e-26 124.0 123 52.8
Cc05_g16470 Coffea canephora HOM05D005601 ORTHO05D007265 3.6e-26 123.6 83 68.7
SEGI_03880 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 4.4e-24 116.7 81 59.3
SEGI_02544 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 2.8e-23 114.0 88 58.0
Zm00001eb338130 Zea mays HOM05D005601 ORTHO05D007265 8.2e-23 112.5 122 49.2
SHI32862 Sapria himalayana HOM05D005601 ORTHO05D007265 1.2e-21 108.6 61 75.4
Medtr2g065540 Medicago truncatula HOM05D005601 ORTHO05D007265 8.5e-20 102.4 59 71.2
ATR0752G173 Amborella trichopoda HOM05D005601 ORTHO05D007265 4.7e-18 96.7 54 77.8
SHI32867 Sapria himalayana HOM05D005601 ORTHO05D007265 1.1e-16 92.0 82 53.7
PRCOL_00003152 Prasinoderma coloniale HOM05D005601 ORTHO05D007265 4.8e-15 86.7 176 31.2
Zm00001eb249880 Zea mays HOM05D005601 ORTHO05D007265 5.3e-14 83.2 52 67.3
SHI32866 Sapria himalayana HOM05D005601 ORTHO05D007265 3.8e-12 77.0 58 62.1
Cpa.g.sc32.60 Carica papaya HOM05D005601 ORTHO05D000047 1.1e-11 75.5 42 78.6
Zm00001eb234590 Zea mays HOM05D000076 ORTHO05D007265 2.1e-10 71.2 42 71.4
Zm00001eb316750 Zea mays HOM05D000076 ORTHO05D001279 1.0e-09 68.9 42 69.0
HPP92_016689 Vanilla planifolia HOM05D005601 ORTHO05D007265 3.0e-09 67.4 37 70.3
BraA06t24405Z Brassica rapa HOM05D005601 ORTHO05D007265 1.7e-07 61.6 101 34.7
A06p12420 Brassica napus HOM05D005601 ORTHO05D007265 3.7e-07 60.5 101 34.7
BcaC05g25566 Brassica carinata HOM05D005601 ORTHO05D007265 1.1e-06 58.9 101 34.7


User provided reference genes

Program Settings