Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G049600 Carya illinoinensis HOM05D001674 ORTHO05D008599 0.0e+00 2136.7 1200 100.0
QL10p018629 Quercus lobata HOM05D001674 ORTHO05D008599 0.0e+00 1640.2 1312 75.6
Thecc.03G096700 Theobroma cacao HOM05D001674 ORTHO05D008599 0.0e+00 1394.4 1315 66.0
Ciclev10018469m.g Citrus clementina HOM05D001674 ORTHO05D008599 0.0e+00 1389.8 1300 67.6
Atru.chr9.280 Acer truncatum HOM05D001674 ORTHO05D008599 0.0e+00 1380.9 1315 67.4
Prupe.5G200400 Prunus persica HOM05D001674 ORTHO05D008599 0.0e+00 1379.0 1309 67.2
Duzib068G0733 Durio zibethinus HOM05D001674 ORTHO05D008599 0.0e+00 1375.1 1310 66.4
COL.COLO4_36885 Corchorus olitorius HOM05D001674 ORTHO05D008599 0.0e+00 1335.9 1311 64.9
TAR629G0913 Trochodendron aralioides HOM05D001674 ORTHO05D008599 0.0e+00 1333.2 1332 63.4
Manes.06G087600 Manihot esculenta HOM05D001674 ORTHO05D008599 0.0e+00 1313.1 1309 64.7
Haze_07676 Corylus avellana HOM05D001674 ORTHO05D008599 0.0e+00 1307.7 1095 73.6
CANSAT80G0851 Cannabis sativa HOM05D001674 ORTHO05D008599 0.0e+00 1299.6 1310 63.9
Gorai.007G039000 Gossypium raimondii HOM05D001674 ORTHO05D008599 0.0e+00 1297.0 1309 63.4
Glyma.17G076400 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1294.3 1310 63.6
Lalb_Chr13g0302981 Lupinus albus HOM05D001674 ORTHO05D008599 0.0e+00 1293.9 1310 61.8
RcHm_v2.0_Chr7g0182421 Rosa chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1293.5 1306 63.6
GSVIVG01007917001 Vitis vinifera HOM05D001674 ORTHO05D008599 0.0e+00 1291.2 1196 64.3
VMungo1215G3312 Vigna mungo HOM05D001674 ORTHO05D008599 0.0e+00 1290.4 1311 63.4
Lj4g0011824 Lotus japonicus HOM05D001674 ORTHO05D008599 0.0e+00 1289.2 1302 63.3
Phvul.003G186700 Phaseolus vulgaris HOM05D001674 ORTHO05D008599 0.0e+00 1285.4 1309 63.5
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1282.7 1308 63.6
FvH4_5g14340 Fragaria vesca HOM05D001674 ORTHO05D008599 0.0e+00 1282.3 1308 63.8
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1281.5 1308 63.8
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1277.7 1308 63.7
Glyma.05G023300 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1276.9 1310 62.9
Gohir.A11G032900 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1270.4 1309 62.5
Actinidia04849 Actinidia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1256.1 1313 61.1
Ca_21793_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008599 0.0e+00 1249.2 1312 61.4
Sed0027646 Sechium edule HOM05D001674 ORTHO05D008599 0.0e+00 1248.4 1313 60.8
Sabra12G0048200 Salix brachista HOM05D001674 ORTHO05D008599 0.0e+00 1246.9 1455 57.3
Hma1.2p1_0060F.1_g033350 Hydrangea macrophylla HOM05D001674 ORTHO05D008599 0.0e+00 1238.0 1283 62.4
Nn4g23353 Nelumbo nucifera HOM05D001674 ORTHO05D008599 0.0e+00 1231.9 1315 59.0
CsaV3_1G002700 Cucumis sativus L. HOM05D001674 ORTHO05D008599 0.0e+00 1231.1 1304 60.7
MELO3C017205.2 Cucumis melo HOM05D001674 ORTHO05D008599 0.0e+00 1230.3 1304 60.8
arahy.Tifrunner.gnm1.ann1.MMN4BF Arachis hypogaea HOM05D001674 ORTHO05D008599 0.0e+00 1229.9 1314 60.6
TWI15G1152 Tripterygium wilfordii HOM05D001674 ORTHO05D008599 0.0e+00 1227.2 1300 61.6
TPR.G2046 Trifolium pratense HOM05D001674 ORTHO05D008599 0.0e+00 1221.8 1306 60.6
vmacro17586 Vaccinium macrocarpon HOM05D001674 ORTHO05D008599 0.0e+00 1217.6 1313 58.4
Medtr4g109230 Medicago truncatula HOM05D001674 ORTHO05D008599 0.0e+00 1214.1 1310 60.5
ClCG06G015860 Citrullus lanatus HOM05D001674 ORTHO05D008599 0.0e+00 1205.7 1305 59.6
Cc00_g02250 Coffea canephora HOM05D001674 ORTHO05D008599 0.0e+00 1204.1 1291 59.6
Eucgr.B00566 Eucalyptus grandis HOM05D001674 ORTHO05D008599 0.0e+00 1200.7 1319 60.5
Gohir.D11G036200 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1197.6 1209 62.6
Aqoxy3G00452 Aquilegia oxysepala HOM05D001674 ORTHO05D008599 0.0e+00 1190.6 1290 58.8
Psat4g048680 Pisum sativum HOM05D001674 ORTHO05D008599 0.0e+00 1173.7 1309 59.4
PGR083G0537 Punica granatum HOM05D001674 ORTHO05D008599 0.0e+00 1157.9 1306 57.1
Cpa.g.sc94.3 Carica papaya HOM05D001674 ORTHO05D008599 0.0e+00 1139.0 1246 59.2
Nitab4.5_0004511g0020 Nicotiana tabacum HOM05D001674 ORTHO05D008599 0.0e+00 1137.9 1314 57.1
DCAR_031671 Daucus carota HOM05D001674 ORTHO05D008599 0.0e+00 1119.8 1310 55.0
Potri.012G066900 Populus trichocarpa HOM05D001674 ORTHO05D008599 0.0e+00 1118.2 1138 63.5
PSO478G4640 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1117.8 1285 57.7
CAN.G479.33 Capsicum annuum HOM05D001674 ORTHO05D008599 0.0e+00 1107.4 1299 57.0
Oeu032213.1 Olea europaea HOM05D001674 ORTHO05D008599 0.0e+00 1105.5 1306 58.0
PSO017G4474 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1094.0 1286 58.0
MSTRG.9602 Avicennia marina HOM05D001674 ORTHO05D008599 0.0e+00 1082.4 1313 56.7
AUR62008489 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1080.1 1309 56.4
Hund02613 Selenicereus undatus HOM05D001674 ORTHO05D008599 0.0e+00 1076.6 1300 55.2
Sopen03g034510 Solanum pennellii HOM05D001674 ORTHO05D008599 3.3e-311 1072.0 1316 55.7
AUR62021608 Chenopodium quinoa HOM05D001674 ORTHO05D008599 3.6e-310 1068.5 1314 55.3
HanXRQChr04g0107361 Helianthus annuus HOM05D001674 ORTHO05D008599 1.5e-303 1046.6 1249 54.6
Peaxi162Scf00201g00021 Petunia axillaris HOM05D001674 ORTHO05D008599 5.6e-303 1044.6 1261 56.4
Lsat_1_v5_gn_1_13760 Lactuca sativa HOM05D001674 ORTHO05D008599 5.1e-296 1021.5 1235 55.5
ECA247G0462 Erigeron canadensis HOM05D001674 ORTHO05D008599 7.4e-295 1017.7 1244 53.1
ATR0064G082 Amborella trichopoda HOM05D001674 ORTHO05D008599 9.6e-295 1017.3 1332 53.1
Migut.D01672 Erythranthe guttata HOM05D001674 ORTHO05D008599 4.8e-294 1015.0 1299 50.6
SalBow7G3498 Salvia bowleyana HOM05D001674 ORTHO05D008599 1.2e-289 1000.3 1301 52.7
Solyc03g115510.3 Solanum lycopersicum HOM05D001674 ORTHO05D008599 3.5e-289 998.8 1259 55.0
Rhsim08G0149500 Rhododendron simsii HOM05D001674 ORTHO05D008599 7.9e-289 997.7 1105 57.6
Dinv10682 Davidia involucrata HOM05D001674 ORTHO05D008599 2.3e-280 969.5 960 60.9
Lj5A106T70 Lonicera japonica HOM05D001674 ORTHO05D008599 4.1e-277 958.7 1242 53.5
SGA_v2.0_scaffold3G01735 Striga asiatica HOM05D001674 ORTHO05D008599 6.3e-262 908.3 1339 48.0
MD14G1208500 Malus domestica HOM05D001674 ORTHO05D008599 4.5e-260 902.1 751 74.3
PGSC0003DMG400024553 Solanum tuberosum HOM05D001674 ORTHO05D008599 1.5e-255 887.1 1112 56.3
Sc12g0006570 Simmondsia chinensis HOM05D001674 ORTHO05D008599 1.5e-250 870.5 1142 53.0
Actinidia09243 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.7e-244 849.7 944 57.0
SEGI_10628 Sequoiadendron giganteum HOM05D001674 ORTHO05D008599 8.5e-243 844.7 1233 49.2
Nitab4.5_0020510g0010 Nicotiana tabacum HOM05D001674 ORTHO05D008599 4.7e-233 812.4 1042 56.4
Dinv38777 Davidia involucrata HOM05D001674 ORTHO05D008599 2.2e-222 776.9 823 57.8
Zm00001eb108430 Zea mays HOM05D001674 ORTHO05D008599 3.2e-221 773.1 1097 50.0
unitig_37.g12722 Utricularia gibba HOM05D001674 ORTHO05D008599 6.0e-204 715.7 1131 46.0
Pp3c11_9170 Physcomitrium patens HOM05D001674 ORTHO05D008599 8.9e-200 701.8 1296 43.4
SMO117G0045 Selaginella moellendorffii HOM05D001674 ORTHO05D008599 8.1e-185 652.1 1157 46.8
Ah.02g113890 Amaranthus hybridus HOM05D001674 ORTHO05D008599 1.5e-183 647.9 1003 50.0
Os06g0235300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008599 3.1e-152 543.9 662 57.3
AagrBONN_evm.TU.Sc2ySwM_228.3354 Anthoceros agrestis HOM05D001674 ORTHO05D008599 4.0e-139 500.4 867 42.1
CDE07G0766 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 3.9e-110 404.1 452 58.0
CDE07G0117 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 1.3e-102 379.0 531 50.8
Dinv10683 Davidia involucrata HOM05D001674 ORTHO05D008599 7.1e-96 356.7 326 64.1
Pp3c1_9760 Physcomitrium patens HOM05D001674 ORTHO05D008599 6.8e-91 340.1 1080 31.8
Actinidia09244 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.2e-81 308.5 319 58.9
MD14G1208300 Malus domestica HOM05D001674 ORTHO05D008599 5.6e-77 293.9 237 66.7
Ah.02g113880 Amaranthus hybridus HOM05D001674 ORTHO05D008599 1.7e-73 282.3 259 57.9
Actinidia09199 Actinidia chinensis HOM05D001674 ORTHO05D008599 4.8e-68 264.2 612 36.9
Dinv38778 Davidia involucrata HOM05D001674 ORTHO05D008599 1.1e-61 243.0 340 50.9
Nitab4.5_0002881g0120 Nicotiana tabacum HOM05D001674 ORTHO05D008599 2.5e-56 225.3 233 54.1
Rhsim08G0149700 Rhododendron simsii HOM05D001674 ORTHO05D008599 1.2e-55 223.0 212 60.8
Actinidia09209 Actinidia chinensis HOM05D001674 ORTHO05D008599 4.5e-42 177.9 165 60.6
CDE07G0655 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 1.1e-40 173.3 169 53.8
Actinidia09203 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.2e-36 159.1 129 70.5
TAR376G0971 Trochodendron aralioides HOM05D001674 ORTHO05D008599 1.0e-25 123.6 111 62.2
PRCOL_00000483 Prasinoderma coloniale HOM05D001674 ORTHO05D008599 1.1e-24 120.2 888 24.3
MCO15G104 Micromonas commoda HOM05D001674 ORTHO05D008599 1.2e-23 116.7 250 32.0
CBR_g23193 Chara braunii HOM05D000019 ORTHO05D000048 6.7e-22 110.9 98 60.2
PGSC0003DMG400006818 Solanum tuberosum HOM05D001674 ORTHO05D008599 1.2e-21 110.2 158 42.4
Cre16.g679400 Chlamydomonas reinhardtii HOM05D001674 ORTHO05D008599 9.7e-21 107.1 279 29.7
Cpa.g.sc94.4 Carica papaya HOM05D001674 ORTHO05D008599 4.8e-20 104.8 63 84.1
CBR_g23198 Chara braunii HOM05D000019 ORTHO05D000048 4.8e-20 104.8 367 27.8
unitig_37.g12721 Utricularia gibba HOM05D001674 ORTHO05D008599 9.1e-19 100.5 152 44.7
Lj5A106T69 Lonicera japonica HOM05D001674 ORTHO05D008599 1.3e-17 96.7 70 67.1
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 6.5e-17 94.4 64 73.4
CBR_g23210 Chara braunii HOM05D000019 ORTHO05D000002 6.8e-14 84.3 77 51.9
Nn1g01396 Nelumbo nucifera HOM05D001674 ORTHO05D008599 1.5e-08 66.6 53 73.6
Migut.C00071 Erythranthe guttata HOM05D001674 ORTHO05D008599 6.1e-07 61.2 71 56.3


User provided reference genes

Program Settings