Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 2.0e-109 399.1 192 100.0
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 1.3e-105 386.3 185 99.5
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 3.9e-105 384.8 185 97.8
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 5.1e-105 384.4 187 97.9
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 5.1e-105 384.4 185 97.8
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 5.1e-105 384.4 185 97.8
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 5.1e-105 384.4 185 97.8
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 5.1e-105 384.4 185 97.3
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 6.6e-105 384.0 185 96.8
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 8.6e-105 383.6 187 97.3
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.1e-104 383.3 185 97.8
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 1.1e-104 383.3 184 98.4
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 1.1e-104 383.3 184 98.4
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 1.5e-104 382.9 187 96.8
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.5e-104 382.9 187 96.8
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.5e-104 382.9 187 96.8
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.5e-104 382.9 187 96.8
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.5e-104 382.9 187 96.8
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 1.9e-104 382.5 184 98.4
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 1.9e-104 382.5 187 96.3
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 2.5e-104 382.1 184 97.8
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 4.3e-104 381.3 185 97.3
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 4.3e-104 381.3 187 96.3
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 5.6e-104 380.9 184 96.7
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 5.6e-104 380.9 184 96.7
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 5.6e-104 380.9 185 97.3
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 5.6e-104 380.9 185 97.3
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 5.6e-104 380.9 184 96.2
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 7.3e-104 380.6 185 97.3
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 9.5e-104 380.2 185 96.8
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 9.5e-104 380.2 185 97.3
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 9.5e-104 380.2 184 97.3
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 9.5e-104 380.2 184 97.8
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 9.5e-104 380.2 184 97.8
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.2e-103 379.8 187 96.8
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.2e-103 379.8 187 96.8
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 1.2e-103 379.8 185 96.2
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 1.6e-103 379.4 187 96.8
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 1.6e-103 379.4 185 96.8
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 1.6e-103 379.4 185 96.8
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 1.6e-103 379.4 185 97.3
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 2.8e-103 378.6 187 95.7
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 2.8e-103 378.6 187 94.7
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 2.8e-103 378.6 185 96.8
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 3.6e-103 378.3 185 95.7
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 4.7e-103 377.9 185 96.2
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 4.7e-103 377.9 185 96.2
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 6.2e-103 377.5 185 95.7
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 6.2e-103 377.5 184 96.2
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 6.2e-103 377.5 187 94.7
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 8.1e-103 377.1 184 96.2
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 8.1e-103 377.1 187 94.7
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 8.1e-103 377.1 185 96.8
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 8.1e-103 377.1 185 95.1
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 1.1e-102 376.7 187 95.2
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.4e-102 376.3 205 90.2
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 1.4e-102 376.3 187 94.7
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.8e-102 375.9 185 95.7
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 1.8e-102 375.9 185 94.6
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 3.1e-102 375.2 185 95.7
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 3.1e-102 375.2 184 95.1
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 3.1e-102 375.2 185 95.7
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 4.0e-102 374.8 184 95.7
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 4.0e-102 374.8 185 95.1
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 5.2e-102 374.4 183 97.3
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 6.8e-102 374.0 184 94.6
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 8.9e-102 373.6 188 94.1
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 8.9e-102 373.6 185 95.1
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 8.9e-102 373.6 187 93.6
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 1.2e-101 373.2 187 94.7
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 1.2e-101 373.2 185 94.6
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 1.5e-101 372.9 185 94.6
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 1.5e-101 372.9 184 96.2
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 1.5e-101 372.9 185 93.5
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 1.5e-101 372.9 188 92.6
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 1.5e-101 372.9 188 92.6
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 1.5e-101 372.9 184 96.7
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.5e-101 372.9 187 93.6
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 2.0e-101 372.5 187 94.1
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.6e-101 372.1 183 96.7
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.6e-101 372.1 183 96.7
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 2.6e-101 372.1 188 91.5
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 2.6e-101 372.1 185 94.1
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.4e-101 371.7 187 92.5
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 4.4e-101 371.3 187 92.0
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.4e-101 371.3 185 93.5
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 4.4e-101 371.3 188 93.6
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 5.8e-101 370.9 185 94.1
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 5.8e-101 370.9 187 92.0
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 7.6e-101 370.5 187 93.6
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 9.9e-101 370.2 185 93.0
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 9.9e-101 370.2 185 93.0
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 9.9e-101 370.2 185 93.0
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 9.9e-101 370.2 184 94.0
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 9.9e-101 370.2 187 93.0
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.3e-100 369.8 185 93.5
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 1.7e-100 369.4 185 93.5
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 2.2e-100 369.0 185 94.1
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 2.9e-100 368.6 185 93.5
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 2.9e-100 368.6 185 93.5
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 2.9e-100 368.6 185 93.5
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 2.9e-100 368.6 185 94.1
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 2.9e-100 368.6 187 93.0
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 2.9e-100 368.6 185 91.9
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 3.8e-100 368.2 187 93.0
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 3.8e-100 368.2 187 93.0
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 3.8e-100 368.2 185 93.5
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.8e-100 368.2 187 91.4
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 4.9e-100 367.9 187 92.0
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 4.9e-100 367.9 187 90.9
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 4.9e-100 367.9 185 93.0
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 8.4e-100 367.1 188 91.5
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 8.4e-100 367.1 187 92.5
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 1.4e-99 366.3 186 90.3
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 1.9e-99 365.9 185 93.0
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 1.9e-99 365.9 185 93.0
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 1.9e-99 365.9 186 92.5
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 2.4e-99 365.5 184 94.0
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 3.2e-99 365.2 185 92.4
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 5.4e-99 364.4 187 90.4
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 7.1e-99 364.0 185 93.0
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 7.1e-99 364.0 185 93.0
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 7.1e-99 364.0 185 93.0
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 9.2e-99 363.6 193 89.6
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.2e-98 363.2 197 88.3
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 1.0e-97 360.1 184 92.4
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 1.3e-97 359.8 185 91.4
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 2.3e-97 359.0 187 90.4
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 2.3e-97 359.0 185 91.4
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 8.7e-97 357.1 187 89.8
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 7.3e-96 354.0 186 88.7
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 9.6e-96 353.6 253 71.9
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 3.6e-95 351.7 181 91.7
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 6.2e-95 350.9 182 87.9
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 2.0e-93 345.9 182 89.0
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 3.4e-93 345.1 182 87.4
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 7.1e-91 337.4 183 89.6
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 3.9e-89 331.6 191 82.7
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.1e-88 330.1 158 98.1
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 1.9e-88 329.3 183 80.9
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.9e-88 329.3 182 85.2
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 5.4e-83 311.2 185 81.1
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 6.7e-81 304.3 152 91.4
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 3.1e-78 295.4 143 97.9
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 2.4e-75 285.8 141 95.0
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 4.2e-75 285.0 142 91.5
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 3.9e-73 278.5 139 92.1
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 9.0e-70 267.3 130 93.8
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.7e-68 263.1 136 91.2
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 3.2e-67 258.8 147 86.4
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.6e-66 256.5 189 70.4
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.7e-66 255.8 165 77.6
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 3.5e-66 255.4 128 89.1
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.0e-66 254.6 186 69.9
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 1.2e-58 230.3 188 53.7
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 7.9e-58 227.6 187 56.1
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 3.1e-54 215.7 166 67.5
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 6.1e-50 201.4 157 68.2
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 7.0e-46 188.0 90 93.3
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.5e-45 185.3 115 76.5
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 7.2e-43 177.9 90 88.9
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 9.4e-43 177.6 87 90.8
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.6e-42 176.8 103 79.6
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.6e-42 175.6 87 89.7
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 6.1e-42 174.9 87 89.7
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.3e-41 172.9 87 89.7
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.9e-41 172.2 87 88.5
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.9e-41 172.2 87 88.5
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 9.1e-38 161.0 157 55.4
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.2e-37 160.6 87 86.2
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 5.0e-36 155.2 95 82.1
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 7.2e-35 151.4 79 86.1
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 1.6e-34 150.2 96 79.2
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 3.0e-33 146.0 69 89.9
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 3.3e-32 142.5 70 98.6
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.0e-28 128.6 62 90.3
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.0e-28 128.6 62 90.3
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.0e-28 128.6 62 90.3
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.0e-28 128.6 62 90.3
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.0e-28 128.6 62 90.3
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.0e-28 128.6 62 90.3
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 2.2e-15 86.7 44 88.6
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 2.2e-15 86.7 43 97.7
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 9.2e-14 81.3 55 72.7


User provided reference genes

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