Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 3.1e-202 708.4 384 100.0
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 8.4e-160 567.4 384 78.6
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 2.5e-159 565.8 371 80.6
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 8.2e-155 550.8 386 76.7
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 1.4e-143 513.5 397 71.8
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 2.3e-141 506.1 397 70.3
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 1.0e-136 490.7 397 70.3
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 2.2e-136 489.6 399 67.4
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 1.4e-135 486.9 346 74.6
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 1.4e-135 486.9 399 67.2
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 1.0e-133 480.7 396 66.9
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 1.8e-133 479.9 399 66.7
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 3.9e-133 478.8 400 66.8
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 1.5e-132 476.9 398 68.1
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.5e-132 476.9 398 68.1
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.0e-132 476.5 398 68.3
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.6e-132 476.1 398 68.1
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 2.6e-132 476.1 399 67.4
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 9.7e-132 474.2 391 67.8
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 1.1e-130 470.7 402 66.9
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 1.6e-129 466.8 384 68.2
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 4.5e-129 465.3 402 65.4
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 2.9e-128 462.6 388 67.0
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 5.0e-128 461.8 377 69.2
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 1.1e-127 460.7 390 65.4
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 7.2e-127 458.0 374 66.3
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 9.4e-127 457.6 406 65.8
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 1.2e-126 457.2 371 69.0
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 2.7e-126 456.1 398 65.1
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 4.7e-126 455.3 394 66.8
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 8.0e-126 454.5 364 67.6
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 1.8e-125 453.4 394 65.2
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 1.8e-125 453.4 364 67.9
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 2.3e-125 453.0 388 64.4
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 2.3e-125 453.0 361 68.7
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 2.0e-124 449.9 361 69.8
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.6e-124 449.5 305 78.7
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 1.3e-123 447.2 435 59.8
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 3.7e-123 445.7 400 64.2
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 4.8e-123 445.3 395 64.6
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 1.4e-122 443.7 297 79.5
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 1.8e-122 443.4 378 65.3
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 1.8e-122 443.4 392 63.3
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 2.4e-122 443.0 392 64.0
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 3.1e-122 442.6 271 83.8
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 4.1e-122 442.2 403 63.3
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 4.1e-122 442.2 390 65.1
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 7.0e-122 441.4 392 64.8
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 7.0e-122 441.4 392 64.8
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 2.7e-121 439.5 392 63.3
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 5.9e-121 438.3 404 62.6
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 7.7e-121 438.0 302 75.8
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 1.0e-120 437.6 351 66.7
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 1.7e-120 436.8 395 63.8
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 3.8e-120 435.6 351 66.4
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 1.5e-119 433.7 389 63.5
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 1.9e-119 433.3 351 67.5
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 1.9e-119 433.3 281 79.4
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 2.5e-119 433.0 336 70.2
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 2.5e-119 433.0 281 79.4
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 7.2e-119 431.4 380 63.4
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 2.1e-118 429.9 259 84.6
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 3.6e-118 429.1 279 79.6
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 4.7e-118 428.7 278 78.8
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 4.7e-118 428.7 289 77.5
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 6.1e-118 428.3 281 79.4
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 5.2e-117 425.2 336 68.8
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 1.2e-116 424.1 336 68.8
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 1.5e-116 423.7 357 65.0
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 2.0e-116 423.3 301 74.4
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 9.8e-116 421.0 346 66.2
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 1.1e-114 417.5 347 66.6
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 3.1e-114 416.0 300 73.3
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 1.6e-113 413.7 277 79.1
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 2.7e-113 412.9 278 77.3
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 2.7e-113 412.9 404 59.2
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 1.9e-111 406.8 280 77.9
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 4.2e-111 405.6 277 78.0
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 1.6e-110 403.7 247 83.8
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 6.1e-110 401.7 338 66.3
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 1.1e-106 391.0 243 83.5
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 4.1e-106 389.0 268 74.6
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 1.2e-105 387.5 402 58.7
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 1.2e-105 387.5 268 74.3
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 4.5e-105 385.6 444 53.4
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 1.0e-104 384.4 341 62.5
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 1.7e-104 383.6 267 73.8
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 2.9e-104 382.9 449 52.3
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 2.5e-103 379.8 309 66.3
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 2.5e-103 379.8 344 63.1
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 9.5e-103 377.9 251 79.7
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 2.8e-102 376.3 267 72.3
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 5.7e-100 368.6 271 70.8
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 1.7e-99 367.1 382 57.3
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 3.7e-99 365.9 269 69.5
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 5.0e-96 355.5 388 56.4
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 8.6e-96 354.8 343 58.3
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 1.5e-95 354.0 291 65.6
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.4e-93 347.4 234 76.5
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 8.9e-93 344.7 325 62.2
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 1.7e-91 340.5 267 65.9
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 8.3e-91 338.2 415 50.8
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.4e-90 337.4 207 85.0
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 1.7e-88 330.5 311 60.8
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 1.0e-80 304.7 310 60.3
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 8.6e-80 301.6 431 47.3
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 6.4e-75 285.4 274 54.4
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 3.5e-73 279.6 263 55.5
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 4.6e-73 279.3 178 80.9
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 1.7e-72 277.3 309 55.0
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 9.6e-71 271.6 278 57.2
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 3.8e-67 259.6 257 57.2
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 6.4e-67 258.8 268 54.9
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 4.6e-65 252.7 187 69.0
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.3e-64 251.1 258 53.1
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 1.4e-61 241.1 157 79.0
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 7.6e-60 235.3 262 49.2
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 7.4e-55 218.8 129 86.0
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 1.1e-53 214.9 128 85.9
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 8.4e-51 205.3 115 91.3
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 6.0e-49 199.1 206 55.3
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 2.5e-42 177.2 108 81.5
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.8e-37 161.0 244 37.7
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 5.5e-26 122.9 176 42.0
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 1.8e-24 117.9 86 75.6
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-23 114.0 188 36.2
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 1.7e-22 111.3 90 66.7
Actinidia19728 Actinidia chinensis HOM05D005749 ORTHO05D007208 7.2e-18 95.9 166 42.8
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 5.9e-12 76.3 41 95.1
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 2.9e-11 73.9 38 94.7
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 1.8e-08 64.7 36 86.1
CBR_g41620 Chara braunii HOM05D005749 ORTHO05D007208 2.2e-06 57.8 55 50.9
MCO11G480 Micromonas commoda HOM05D005749 ORTHO05D007208 3.7e-06 57.0 218 24.8


User provided reference genes

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