Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G131300 Carya illinoinensis HOM05D002578 ORTHO05D005154 7.3e-43 176.8 87 100.0
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 8.1e-18 93.6 93 57.0
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.8e-17 92.4 109 51.4
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 1.8e-17 92.4 109 51.4
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 1.8e-17 92.4 109 51.4
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 4.0e-17 91.3 107 51.4
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 6.8e-17 90.5 110 51.8
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 1.2e-16 89.7 109 50.5
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 1.2e-16 89.7 109 50.5
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 1.2e-16 89.7 109 50.5
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 1.2e-16 89.7 109 50.5
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 1.2e-16 89.7 109 50.5
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 1.2e-16 89.7 109 50.5
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 1.2e-16 89.7 109 50.5
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 1.2e-16 89.7 109 50.5
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 1.2e-16 89.7 109 50.5
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 3.4e-16 88.2 107 49.5
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 5.8e-16 87.4 107 48.6
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 1.7e-15 85.9 106 50.0
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.7e-15 85.9 109 47.7
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 2.2e-15 85.5 109 47.7
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 2.2e-15 85.5 109 47.7
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 2.2e-15 85.5 109 47.7
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 2.2e-15 85.5 109 47.7
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 2.9e-15 85.1 107 48.6
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 2.9e-15 85.1 109 48.6
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.9e-15 85.1 109 48.6
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 2.9e-15 85.1 107 48.6
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 2.9e-15 85.1 94 50.0
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 3.8e-15 84.7 109 47.7
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 4.9e-15 84.3 109 48.6
Solyc00g500153.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 6.4e-15 84.0 102 51.0
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 1.1e-14 83.2 109 46.8
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 1.1e-14 83.2 107 47.7
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 1.1e-14 83.2 109 47.7
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.1e-14 83.2 109 47.7
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.1e-14 83.2 109 47.7
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.1e-14 83.2 109 47.7
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.1e-14 83.2 109 47.7
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.1e-14 83.2 107 47.7
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.9e-14 82.4 107 46.7
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.9e-14 82.4 107 46.7
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 2.4e-14 82.0 109 46.8
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 2.4e-14 82.0 109 46.8
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 2.4e-14 82.0 109 46.8
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 2.4e-14 82.0 109 46.8
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 2.4e-14 82.0 102 48.0
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.4e-14 82.0 108 49.1
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 2.4e-14 82.0 107 47.7
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 2.4e-14 82.0 107 47.7
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 2.4e-14 82.0 107 47.7
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 2.4e-14 82.0 108 49.1
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 4.2e-14 81.3 109 46.8
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 4.2e-14 81.3 109 46.8
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 4.2e-14 81.3 109 46.8
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 4.2e-14 81.3 109 46.8
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 4.2e-14 81.3 109 46.8
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 4.2e-14 81.3 109 46.8
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 4.2e-14 81.3 109 46.8
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 4.2e-14 81.3 109 46.8
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 4.2e-14 81.3 107 47.7
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 7.1e-14 80.5 109 47.7
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 7.1e-14 80.5 107 46.7
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 2.7e-13 78.6 107 46.7
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 4.6e-13 77.8 109 47.7
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 4.6e-13 77.8 109 45.0
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 4.6e-13 77.8 96 50.0
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 6.0e-13 77.4 109 45.0
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 7.8e-13 77.0 109 45.9
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.0e-12 76.6 104 46.2
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 8.7e-12 73.6 108 41.7
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 1.1e-11 73.2 102 47.1
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 1.5e-11 72.8 109 44.0
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 1.5e-11 72.8 109 44.0
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 1.5e-11 72.8 109 44.0
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.9e-11 72.4 104 43.3
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 1.9e-11 72.4 97 46.4
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 2.5e-11 72.0 94 46.8
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 2.5e-11 72.0 101 44.6
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 3.3e-11 71.6 108 40.7
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 3.3e-11 71.6 107 43.0
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 4.3e-11 71.2 108 40.7
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 4.3e-11 71.2 88 47.7
Hund07448 Selenicereus undatus HOM05D002578 ORTHO05D005154 5.6e-11 70.9 87 47.1
Nitab4.5_0001339g0110 Nicotiana tabacum HOM05D002578 ORTHO05D005154 6.2e-10 67.4 79 43.0
Lsat_1_v5_gn_5_168120 Lactuca sativa HOM05D002578 ORTHO05D005154 1.1e-09 66.6 108 42.6
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 4.0e-09 64.7 107 39.3
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 9.0e-09 63.5 105 40.0
HanXRQChr05g0152541 Helianthus annuus HOM05D002578 ORTHO05D005154 9.9e-08 60.1 35 82.9
HanXRQChr11g0327001 Helianthus annuus HOM05D002578 ORTHO05D005154 9.9e-08 60.1 35 82.9
Lalb_Chr23g0274261 Lupinus albus HOM05D002578 ORTHO05D005154 9.9e-08 60.1 99 41.4
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 9.9e-08 60.1 107 35.5
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 9.9e-08 60.1 107 35.5
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 1.7e-07 59.3 100 39.0
TWI14G1004 Tripterygium wilfordii HOM05D002578 ORTHO05D005154 1.7e-07 59.3 37 75.7
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 2.2e-07 58.9 107 36.4
Migut.D01324 Erythranthe guttata HOM05D002578 ORTHO05D005154 3.8e-07 58.2 35 80.0
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 3.8e-07 58.2 107 35.5
RcHm_v2.0_Chr2g0118541 Rosa chinensis HOM05D002578 ORTHO05D005154 3.8e-07 58.2 35 80.0
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 4.9e-07 57.8 35 80.0
Nn1g08404 Nelumbo nucifera HOM05D002578 ORTHO05D005154 4.9e-07 57.8 35 80.0
Psat6g181640 Pisum sativum HOM05D002578 ORTHO05D005154 6.4e-07 57.4 35 80.0
MD14G1153600 Malus domestica HOM05D002578 ORTHO05D005154 1.1e-06 56.6 35 77.1
CsaV3_4G010600 Cucumis sativus L. HOM05D002578 ORTHO05D005154 1.9e-06 55.8 35 77.1
Gohir.A09G103050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.4e-06 55.5 35 77.1
Gohir.D09G093200 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.4e-06 55.5 35 77.1
Lj2A1234G110 Lonicera japonica HOM05D002578 ORTHO05D005154 5.4e-06 54.3 35 74.3
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 7.1e-06 53.9 35 74.3
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 7.1e-06 53.9 35 74.3
Potri.002G235600 Populus trichocarpa HOM05D002578 ORTHO05D005154 9.3e-06 53.5 34 70.6


User provided reference genes

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