Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.3e-207 726.1 363 100.0
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 5.0e-170 601.3 364 84.1
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 1.0e-151 540.4 352 76.4
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.8e-151 539.7 365 74.5
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 4.4e-150 535.0 356 77.5
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 9.8e-150 533.9 354 75.4
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 4.8e-149 531.6 354 75.7
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.4e-148 530.0 353 76.8
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.8e-148 529.6 364 72.8
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 9.1e-148 527.3 327 80.4
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.2e-147 526.9 356 75.6
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.5e-147 525.4 354 75.1
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 8.6e-146 520.8 356 74.2
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 2.5e-145 519.2 353 75.4
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 4.2e-145 518.5 388 69.1
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.1e-144 516.2 354 73.7
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 3.6e-144 515.4 333 79.6
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 3.6e-144 515.4 348 75.0
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 4.7e-144 515.0 352 74.1
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.0e-143 513.8 327 78.6
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.4e-143 513.5 333 76.9
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.4e-143 513.5 359 74.4
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.4e-143 513.5 351 75.5
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.8e-143 513.1 383 69.7
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 5.2e-143 511.5 351 75.5
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 1.2e-142 510.4 350 74.0
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 1.2e-142 510.4 402 67.7
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.2e-142 510.4 353 73.9
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 1.5e-142 510.0 351 74.9
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 3.4e-142 508.8 326 77.0
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 4.4e-142 508.4 351 74.9
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 7.5e-142 507.7 352 73.6
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 9.8e-142 507.3 325 76.9
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 9.8e-142 507.3 352 73.3
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 9.8e-142 507.3 352 73.3
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.3e-141 506.9 354 73.4
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.3e-141 506.9 351 73.2
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 1.7e-141 506.5 329 77.2
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.7e-141 506.5 354 73.4
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.2e-141 506.1 356 73.0
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 2.8e-141 505.8 355 72.1
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 3.7e-141 505.4 352 73.0
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 8.3e-141 504.2 354 74.0
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.1e-140 503.8 352 72.7
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 4.1e-140 501.9 354 71.8
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 5.4e-140 501.5 356 71.1
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 7.0e-140 501.1 351 71.8
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 9.2e-140 500.7 332 75.6
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 9.2e-140 500.7 327 74.9
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.6e-139 500.0 353 73.1
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 4.5e-139 498.4 335 73.4
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 5.9e-139 498.0 354 70.6
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 5.9e-139 498.0 338 71.3
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 7.8e-139 497.7 331 74.3
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 7.8e-139 497.7 353 71.7
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 2.3e-138 496.1 345 71.6
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 2.3e-138 496.1 346 72.5
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 3.8e-138 495.4 368 69.6
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 5.0e-138 495.0 355 70.7
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 8.6e-138 494.2 335 72.2
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.1e-137 493.8 356 71.6
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.1e-137 493.8 324 74.4
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.5e-137 493.4 345 71.0
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.3e-137 491.9 341 71.6
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 7.3e-137 491.1 338 71.9
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 9.5e-137 490.7 350 69.7
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 9.5e-137 490.7 334 72.2
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.1e-136 489.6 358 69.8
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 2.8e-136 489.2 543 52.1
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 3.6e-136 488.8 364 67.3
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 3.6e-136 488.8 353 70.0
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 4.7e-136 488.4 352 70.5
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 6.1e-136 488.0 337 72.4
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 6.1e-136 488.0 351 69.5
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.0e-135 487.3 352 68.2
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.0e-135 487.3 351 70.1
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.8e-135 486.5 337 70.9
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.8e-135 486.5 351 69.5
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.8e-135 486.5 332 73.5
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 2.3e-135 486.1 351 69.5
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 3.0e-135 485.7 337 70.9
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 3.0e-135 485.7 356 69.1
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 4.0e-135 485.3 356 69.1
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 4.0e-135 485.3 355 69.9
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 5.2e-135 485.0 350 70.9
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-134 483.8 332 73.8
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.2e-134 483.8 371 68.2
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 2.0e-134 483.0 329 70.8
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 2.6e-134 482.6 363 67.5
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 5.8e-134 481.5 333 74.5
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 7.5e-134 481.1 355 69.9
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 9.8e-134 480.7 351 69.2
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.3e-133 480.3 357 68.6
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 1.7e-133 479.9 396 64.6
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 4.9e-133 478.4 350 68.9
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 4.9e-133 478.4 377 67.4
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 8.3e-133 477.6 352 68.8
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.1e-132 477.2 332 72.6
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 3.2e-132 475.7 359 68.5
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 9.2e-132 474.2 307 77.9
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.2e-131 473.8 337 68.2
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.2e-131 473.8 353 69.1
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.7e-131 472.6 357 68.3
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 6.0e-131 471.5 333 72.4
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 7.8e-131 471.1 353 67.1
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.3e-130 470.3 329 70.5
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.7e-130 469.9 314 75.5
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.1e-129 467.2 354 66.7
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.5e-129 466.8 333 70.9
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.8e-128 462.6 352 69.0
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.0e-127 458.8 307 75.2
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 6.8e-127 458.0 339 68.4
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.5e-126 456.8 342 68.4
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 7.5e-126 454.5 325 71.1
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.3e-125 453.8 307 73.9
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 4.9e-125 451.8 331 67.7
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.1e-124 450.7 347 65.7
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.1e-124 450.7 331 68.6
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.2e-124 449.1 412 59.2
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.0e-122 444.1 356 65.4
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.7e-122 443.4 336 67.9
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 2.8e-120 436.0 334 67.7
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 5.2e-119 431.8 347 65.7
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 7.5e-118 427.9 265 78.1
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.1e-116 424.1 351 65.0
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 3.3e-113 412.5 329 63.5
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 6.2e-112 408.3 340 64.1
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.4e-108 397.1 279 73.1
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.2e-107 394.0 287 72.1
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 2.7e-107 392.9 268 72.8
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.7e-106 390.2 337 60.8
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 4.7e-104 382.1 292 69.2
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 2.1e-99 366.7 351 59.3
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 2.0e-94 350.1 346 54.6
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 2.6e-94 349.7 247 71.7
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 7.6e-94 348.2 206 82.5
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 2.9e-93 346.3 227 74.0
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 4.9e-93 345.5 323 54.2
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 8.1e-88 328.2 219 74.4
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 5.8e-86 322.0 210 77.1
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 2.4e-84 316.6 219 73.1
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 4.0e-79 299.3 299 51.2
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 3.4e-70 269.6 218 65.1
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 1.7e-69 267.3 163 79.1
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 8.5e-69 265.0 189 72.0
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 1.1e-65 254.6 373 41.0
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.6e-62 243.4 161 73.9
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 3.4e-62 243.0 173 70.5
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.0e-61 241.5 165 72.7
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 3.1e-55 219.9 170 65.9
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 5.2e-50 202.6 263 47.1
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.2e-46 191.4 338 39.3
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 9.4e-44 181.8 120 74.2
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 3.3e-41 173.3 193 49.2
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 1.1e-36 158.3 117 69.2
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 1.0e-26 125.2 254 31.9
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.4e-26 124.8 361 30.5
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.2e-25 121.7 138 46.4
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.7e-24 117.9 71 80.3
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 5.9e-22 109.4 128 47.7
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 3.9e-21 106.7 382 28.3
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 1.2e-19 101.7 82 62.2
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 8.0e-19 99.0 92 59.8
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.8e-18 97.8 69 66.7
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.9e-16 90.5 57 73.7
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.1e-15 88.6 56 76.8
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.8e-11 73.9 57 57.9
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 4.1e-07 60.1 141 35.5
Cfa023540 Carpinus fangiana HOM05D000112 ORTHO05D001327 3.5e-06 57.0 54 53.7


User provided reference genes

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