Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 9.4e-195 683.3 341 100.0
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.4e-174 616.3 341 90.3
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 6.1e-162 574.3 340 82.9
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 2.3e-161 572.4 338 83.1
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 4.4e-160 568.2 342 82.5
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 6.4e-143 511.1 343 75.5
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 1.0e-140 503.8 344 74.4
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 3.0e-140 502.3 340 72.9
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 4.7e-138 495.0 328 74.1
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 4.7e-138 495.0 340 72.1
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.5e-136 490.0 335 73.4
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 5.8e-136 488.0 336 72.6
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 5.8e-136 488.0 342 72.2
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 1.3e-135 486.9 346 70.2
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.3e-135 486.9 338 72.5
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.3e-135 486.9 345 72.5
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 2.2e-135 486.1 339 74.3
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 3.7e-135 485.3 346 70.8
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 6.4e-135 484.6 338 70.4
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 8.3e-135 484.2 329 73.3
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 1.1e-134 483.8 338 70.7
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 1.4e-134 483.4 321 75.7
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 4.1e-134 481.9 342 69.9
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 4.1e-134 481.9 338 70.4
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 4.1e-134 481.9 342 69.6
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 5.4e-134 481.5 338 70.1
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 7.1e-134 481.1 338 70.4
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 9.2e-134 480.7 341 70.7
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 9.2e-134 480.7 336 73.8
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 9.2e-134 480.7 346 69.9
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 1.2e-133 480.3 336 73.2
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.2e-133 480.3 336 73.5
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 1.6e-133 479.9 340 68.8
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 2.7e-133 479.2 338 69.8
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 3.5e-133 478.8 336 70.2
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 4.6e-133 478.4 344 69.2
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 4.6e-133 478.4 336 73.8
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 1.3e-132 476.9 338 70.7
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 1.7e-132 476.5 340 69.7
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 2.3e-132 476.1 338 70.7
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 6.6e-132 474.6 335 70.1
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 8.6e-132 474.2 346 68.8
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 3.3e-131 472.2 338 71.3
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 4.3e-131 471.9 346 67.9
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 5.6e-131 471.5 329 70.8
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 7.3e-131 471.1 346 67.6
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 1.2e-130 470.3 338 69.8
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 1.1e-129 467.2 341 69.2
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.1e-129 467.2 346 67.6
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.4e-129 466.8 343 68.8
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.4e-129 466.8 343 68.8
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 1.8e-129 466.5 341 69.8
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 2.3e-129 466.1 367 64.9
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 4.0e-129 465.3 344 67.4
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 2.0e-128 463.0 346 67.1
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.0e-128 463.0 326 69.9
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 3.4e-128 462.2 342 66.7
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 3.5e-125 452.2 337 66.2
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 4.6e-125 451.8 333 68.8
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 3.9e-124 448.7 346 67.1
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 1.2e-122 443.7 334 66.8
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 2.1e-122 443.0 335 66.6
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 2.8e-122 442.6 317 69.1
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 2.8e-122 442.6 323 68.1
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 4.7e-122 441.8 317 69.1
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 6.2e-122 441.4 329 69.3
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 3.1e-121 439.1 317 69.1
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 4.0e-121 438.7 332 66.3
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 5.2e-121 438.3 333 66.1
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 6.8e-121 438.0 333 66.7
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 1.2e-120 437.2 338 65.7
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 2.6e-120 436.0 332 66.3
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 3.4e-120 435.6 317 68.1
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 4.4e-120 435.3 332 65.1
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 5.8e-120 434.9 339 64.3
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 9.9e-120 434.1 338 64.8
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 1.7e-119 433.3 325 66.8
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 4.9e-119 431.8 339 64.0
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 4.9e-119 431.8 343 65.0
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 1.1e-118 430.6 340 64.4
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 1.9e-118 429.9 318 67.6
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 2.4e-118 429.5 339 63.4
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 3.2e-118 429.1 337 62.6
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 5.4e-118 428.3 337 64.7
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 9.3e-118 427.6 339 62.8
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 2.7e-117 426.0 336 62.5
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 6.0e-117 424.9 339 62.5
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.5e-115 420.2 333 64.9
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 1.5e-115 420.2 323 65.0
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 5.6e-115 418.3 321 64.2
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 5.6e-115 418.3 328 63.7
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 7.3e-115 417.9 341 62.8
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 1.6e-114 416.8 339 61.4
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 2.1e-114 416.4 331 63.1
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 2.1e-114 416.4 343 63.0
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 3.6e-114 415.6 329 63.5
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 3.6e-114 415.6 329 63.5
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 6.2e-114 414.8 340 62.4
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 1.4e-113 413.7 325 64.6
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 3.1e-113 412.5 321 64.2
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 4.2e-110 402.1 342 60.5
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 3.3e-107 392.5 322 62.7
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 2.1e-106 389.8 330 61.5
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 4.9e-103 378.6 263 68.4
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.4e-102 377.1 320 59.4
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.6e-101 373.6 317 59.3
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 1.8e-100 370.2 320 59.4
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 5.6e-99 365.2 288 63.2
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 4.8e-98 362.1 322 58.1
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 7.4e-91 338.2 254 66.9
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 2.3e-84 316.6 332 51.8
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.1e-83 314.3 323 48.9
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 1.5e-75 287.3 345 42.9
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 1.1e-67 261.2 183 65.6
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 1.1e-67 261.2 350 39.7
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 2.0e-67 260.4 183 65.6
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 2.9e-63 246.5 224 56.2
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 4.7e-61 239.2 253 51.8
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 2.3e-60 236.9 187 62.0
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 4.5e-56 222.6 135 77.0
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 4.5e-56 222.6 147 74.1
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 8.8e-52 208.4 323 37.8
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 5.4e-49 199.1 158 66.5
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 8.8e-44 181.8 288 35.8
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 3.4e-43 179.9 146 61.6
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 8.3e-42 175.3 121 71.9
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 5.4e-41 172.6 127 70.9
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 3.5e-40 169.9 99 80.8
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 1.0e-39 168.3 99 79.8
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 1.3e-39 167.9 99 79.8
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 5.0e-39 166.0 98 70.4
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 8.6e-39 165.2 100 77.0
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 7.3e-38 162.2 117 65.8
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 1.4e-36 157.9 115 65.2
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 9.8e-35 151.8 115 60.9
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 2.0e-32 144.1 207 41.5
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 4.6e-32 142.9 84 81.0
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 4.6e-32 142.9 84 81.0
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 1.5e-30 137.9 173 44.5
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 5.6e-30 136.0 279 30.1
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 1.0e-28 131.7 344 27.0
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 2.9e-26 123.6 164 39.6
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 1.1e-25 121.7 158 43.7
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 2.7e-24 117.1 139 48.2
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 6.0e-24 115.9 135 50.4
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 3.9e-23 113.2 197 40.1
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 5.0e-23 112.8 130 52.3
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 1.5e-19 101.3 113 46.9
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 2.1e-16 90.9 97 50.5
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 9.5e-14 82.0 43 90.7
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 2.0e-11 74.3 44 81.8
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 1.3e-10 71.6 128 43.0
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 3.2e-09 67.0 48 70.8
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 1.2e-08 65.1 142 35.9
Phvul.006G027500 Phaseolus vulgaris HOM05D001610 ORTHO05D001585 3.0e-07 60.5 253 22.1
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 1.1e-06 58.5 175 29.1
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 1.1e-06 58.5 111 44.1
Medtr3g449990 Medicago truncatula HOM05D001610 ORTHO05D001585 3.3e-06 57.0 277 20.2
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 3.3e-06 57.0 48 64.6
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 5.6e-06 56.2 140 30.0
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 7.3e-06 55.8 278 23.4
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 9.6e-06 55.5 40 57.5
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 9.6e-06 55.5 162 30.9


User provided reference genes

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