Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 2.6e-173 612.1 329 100.0
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 3.2e-123 445.7 324 76.5
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 3.0e-121 439.1 309 77.3
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 4.3e-120 435.3 320 69.7
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 2.4e-118 429.5 322 73.6
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.2e-117 427.2 322 73.3
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 2.6e-117 426.0 320 72.5
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 3.4e-117 425.6 324 70.1
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 5.8e-117 424.9 322 73.6
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 2.2e-116 422.9 323 72.4
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 6.4e-116 421.4 320 71.9
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 8.4e-116 421.0 341 73.3
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 3.2e-115 419.1 323 70.6
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 4.6e-114 415.2 323 69.3
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.1e-112 410.6 306 73.9
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 1.5e-112 410.2 300 72.3
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 5.6e-112 408.3 323 70.6
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 3.6e-111 405.6 316 68.7
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 6.2e-111 404.8 216 91.2
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.1e-110 404.1 321 69.2
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 1.1e-110 404.1 322 70.2
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 1.4e-110 403.7 216 90.7
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 1.8e-110 403.3 326 69.6
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 5.2e-110 401.7 264 78.0
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.2e-109 400.6 319 66.8
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 3.4e-109 399.1 324 70.4
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 7.6e-109 397.9 318 68.9
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 9.9e-109 397.5 319 71.5
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 9.9e-109 397.5 320 71.2
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 1.7e-108 396.7 322 70.5
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 8.4e-108 394.4 313 70.0
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 1.1e-107 394.0 337 66.5
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 1.4e-107 393.7 321 69.8
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 2.1e-106 389.8 320 70.6
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 2.7e-106 389.4 318 65.4
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 3.5e-106 389.0 301 72.4
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 3.5e-106 389.0 313 69.0
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 4.6e-106 388.7 301 69.4
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.0e-105 387.5 317 68.5
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 1.3e-105 387.1 311 66.9
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 6.6e-105 384.8 311 70.4
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 1.9e-104 383.3 296 67.6
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 5.6e-104 381.7 303 69.6
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 7.3e-104 381.3 288 71.5
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 9.6e-104 380.9 320 68.8
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 1.3e-103 380.6 317 69.1
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 2.1e-103 379.8 333 62.8
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.8e-103 379.4 299 73.2
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 8.1e-103 377.9 298 69.1
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 1.1e-102 377.5 273 75.1
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 3.1e-102 375.9 309 64.4
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 6.9e-102 374.8 287 70.4
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 9.0e-102 374.4 261 72.4
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 2.0e-101 373.2 322 66.8
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 4.5e-101 372.1 306 71.2
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.3e-100 370.5 299 65.9
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 2.9e-100 369.4 321 63.2
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 1.6e-98 363.6 312 64.4
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 2.7e-98 362.8 267 75.3
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 4.6e-98 362.1 297 69.0
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.0e-97 360.9 255 71.8
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 1.5e-96 357.1 322 64.0
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 4.3e-96 355.5 335 62.7
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 4.3e-96 355.5 339 61.9
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 7.4e-96 354.8 274 67.9
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 2.8e-95 352.8 329 63.2
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 4.8e-95 352.1 322 61.5
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 8.1e-95 351.3 323 63.8
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.4e-94 350.5 302 64.9
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 1.4e-94 350.5 242 71.9
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 4.0e-94 349.0 254 69.3
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 1.2e-93 347.4 329 62.3
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 5.8e-93 345.1 252 69.4
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 7.6e-93 344.7 323 60.1
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.7e-92 343.6 358 58.7
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 3.8e-92 342.4 300 66.3
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 5.5e-91 338.6 273 64.8
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 7.1e-91 338.2 333 61.3
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 7.1e-91 338.2 333 61.3
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 1.2e-90 337.4 337 59.9
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 1.6e-90 337.0 318 62.6
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 3.5e-90 335.9 337 59.6
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 6.0e-90 335.1 335 58.8
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 6.0e-90 335.1 310 65.8
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 6.0e-90 335.1 261 71.6
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 1.3e-89 334.0 312 64.1
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 1.8e-89 333.6 312 64.1
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 3.0e-89 332.8 312 63.8
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 3.0e-89 332.8 339 59.9
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 1.1e-88 330.9 332 57.8
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 3.3e-88 329.3 321 57.9
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 4.3e-88 328.9 313 60.7
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 2.8e-87 326.2 313 60.7
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 2.8e-87 326.2 242 70.2
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 3.7e-87 325.9 331 59.5
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.7e-87 325.9 331 59.5
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 6.9e-86 321.6 331 58.9
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 1.2e-85 320.9 292 63.7
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 7.6e-85 318.2 310 57.7
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 3.8e-84 315.8 325 59.4
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 3.2e-83 312.8 255 67.5
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 1.2e-82 310.8 329 55.0
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 2.8e-79 299.7 332 56.3
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 6.3e-79 298.5 288 59.4
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 5.3e-78 295.4 327 56.3
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 2.6e-77 293.1 328 55.2
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 2.6e-77 293.1 233 61.4
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 5.7e-72 275.4 181 72.9
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 9.7e-72 274.6 300 57.7
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 3.4e-69 266.2 246 60.2
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.8e-63 246.5 313 46.6
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 1.5e-61 240.7 137 87.6
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 2.9e-60 236.5 284 51.4
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 1.4e-59 234.2 364 49.5
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.8e-57 227.3 330 44.5
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 5.3e-54 215.7 237 45.6
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 2.7e-50 203.4 266 47.4
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 9.7e-48 194.9 135 66.7
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.0e-45 187.2 177 58.8
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 1.0e-44 184.9 138 70.3
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 2.2e-39 167.2 245 40.8
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.0e-36 156.0 291 34.7
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 8.6e-36 155.2 95 78.9
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 8.6e-36 155.2 97 77.3
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 8.0e-34 148.7 177 41.8
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 4.7e-26 122.9 217 31.3
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 8.0e-26 122.1 172 51.7
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 7.5e-24 115.5 210 33.8
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 7.5e-24 115.5 171 45.6
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 1.3e-23 114.8 70 78.6
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 4.4e-16 89.7 142 40.1
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 7.8e-13 79.0 234 29.1
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.5e-11 74.7 204 28.4
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.9e-11 74.3 63 68.3
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 1.5e-08 64.7 68 57.4
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 2.2e-07 60.8 98 30.6


User provided reference genes

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