Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 6.1e-241 837.0 409 100.0
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.6e-231 805.1 409 95.8
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 1.6e-228 795.8 405 95.3
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 3.5e-228 794.7 408 93.6
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 8.5e-227 790.0 409 93.9
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 1.5e-226 789.3 409 93.6
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 3.6e-225 784.6 409 92.7
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 4.7e-225 784.3 409 93.2
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 8.0e-225 783.5 409 92.2
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 8.8e-224 780.0 409 91.7
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 1.7e-222 775.8 409 91.4
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 4.8e-222 774.2 409 91.4
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 8.2e-222 773.5 408 91.2
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 2.7e-220 768.5 409 89.7
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.3e-219 766.1 409 90.2
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 1.7e-219 765.8 406 90.6
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 2.9e-219 765.0 409 89.7
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 5.0e-219 764.2 406 90.4
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 5.0e-219 764.2 407 89.9
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 6.5e-219 763.8 409 89.5
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 1.1e-218 763.1 409 88.8
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 1.5e-218 762.7 409 89.2
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 2.5e-218 761.9 409 89.2
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 3.2e-218 761.5 406 89.9
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 3.2e-218 761.5 406 89.9
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 5.5e-218 760.8 406 89.9
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 5.5e-218 760.8 409 89.5
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 5.5e-218 760.8 409 89.2
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 7.2e-218 760.4 406 89.9
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 9.4e-218 760.0 409 89.0
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.2e-217 759.6 409 89.2
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 1.6e-217 759.2 404 90.3
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 2.1e-217 758.8 409 88.5
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.7e-217 758.4 406 89.2
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.6e-217 758.1 406 89.4
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 3.6e-217 758.1 409 88.0
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 4.7e-217 757.7 448 83.5
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 4.7e-217 757.7 406 90.4
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 6.1e-217 757.3 406 88.9
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 6.1e-217 757.3 406 89.7
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 6.1e-217 757.3 409 89.0
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 8.0e-217 756.9 404 89.1
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 8.0e-217 756.9 406 89.7
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.0e-216 756.5 409 88.5
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.4e-216 756.1 404 88.9
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 1.8e-216 755.7 406 89.4
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 2.3e-216 755.4 410 88.8
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 4.0e-216 754.6 406 89.4
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 6.8e-216 753.8 410 88.5
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 8.8e-216 753.4 406 88.9
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 3.4e-215 751.5 406 88.4
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.4e-215 751.5 406 88.7
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 4.4e-215 751.1 406 88.7
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 5.7e-215 750.7 404 87.9
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 9.8e-215 750.0 409 86.6
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 9.8e-215 750.0 406 88.4
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 1.3e-214 749.6 405 88.6
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 1.7e-214 749.2 409 88.0
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 1.7e-214 749.2 405 87.7
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 1.7e-214 749.2 406 88.4
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 1.7e-214 749.2 404 87.9
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 2.2e-214 748.8 406 88.9
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 2.2e-214 748.8 410 87.6
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 2.2e-214 748.8 406 88.2
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 2.8e-214 748.4 410 87.6
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 2.8e-214 748.4 425 85.9
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 4.8e-214 747.7 404 87.6
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 8.3e-214 746.9 406 87.9
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 1.1e-213 746.5 404 88.1
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 1.1e-213 746.5 406 88.4
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 1.1e-213 746.5 404 88.9
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.4e-213 746.1 406 88.2
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 1.8e-213 745.7 409 87.0
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 2.4e-213 745.3 406 88.4
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 2.4e-213 745.3 411 88.1
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.4e-213 745.3 452 81.6
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 3.1e-213 745.0 407 87.0
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 4.1e-213 744.6 409 86.6
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 7.0e-213 743.8 406 87.9
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 2.0e-212 742.3 409 85.6
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 2.7e-212 741.9 409 86.1
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 3.5e-212 741.5 409 86.1
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 3.5e-212 741.5 409 85.8
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 5.9e-212 740.7 409 86.1
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 2.9e-211 738.4 421 85.5
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 2.9e-211 738.4 407 87.7
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 3.8e-211 738.0 409 85.3
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 5.0e-211 737.6 409 85.1
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 6.6e-211 737.3 409 85.8
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 6.6e-211 737.3 409 85.8
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 6.6e-211 737.3 409 85.6
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 1.5e-210 736.1 409 85.3
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 1.9e-210 735.7 409 86.1
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 2.5e-210 735.3 409 85.6
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 7.2e-210 733.8 396 88.4
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 9.5e-210 733.4 409 84.8
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 3.6e-209 731.5 410 85.1
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 3.6e-209 731.5 410 85.1
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 4.7e-209 731.1 436 82.8
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 8.0e-209 730.3 409 84.8
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 1.0e-208 729.9 410 85.1
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.4e-208 729.6 406 85.7
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.8e-208 729.2 476 76.7
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 5.2e-208 727.6 406 86.0
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 8.9e-208 726.9 405 84.9
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 3.4e-207 724.9 377 92.0
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 5.7e-207 724.2 406 85.7
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.3e-206 723.0 406 84.5
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.8e-206 721.8 406 84.0
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 4.1e-205 718.0 385 88.6
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 1.6e-204 716.1 520 71.2
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.3e-203 713.0 405 83.2
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.9e-202 709.1 381 89.2
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 5.6e-202 707.6 452 75.9
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 3.1e-200 701.8 413 82.3
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 4.0e-200 701.4 415 83.4
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 6.4e-198 694.1 386 86.5
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 1.1e-197 693.3 358 93.6
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 3.5e-196 688.3 410 81.5
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 1.5e-191 672.9 409 78.2
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 5.8e-191 671.0 395 82.0
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 1.1e-189 666.8 356 88.8
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 6.0e-188 661.0 358 87.7
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 1.3e-187 659.8 395 81.0
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 1.9e-181 639.4 406 77.6
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 4.4e-175 618.2 394 75.9
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 7.6e-175 617.5 404 73.0
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.3e-174 616.7 320 91.6
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.6e-172 609.8 405 71.1
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 7.3e-170 600.9 380 73.2
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 1.3e-163 580.1 376 72.6
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 4.0e-160 568.5 387 74.4
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 1.4e-157 560.1 409 69.2
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 4.8e-153 545.0 318 83.0
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 4.6e-148 528.5 310 85.2
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 2.1e-140 503.1 400 62.2
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 4.6e-132 475.3 245 93.1
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 2.4e-128 463.0 258 84.9
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 3.6e-124 449.1 368 61.4
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 3.1e-120 436.0 385 56.4
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 7.0e-120 434.9 238 87.0
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 3.7e-113 412.5 225 87.1
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 8.0e-108 394.8 239 79.1
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 1.5e-101 374.0 197 89.8
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 4.6e-79 299.3 404 43.8
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 2.0e-74 283.9 390 43.8
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 4.1e-72 276.2 183 74.9
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 8.6e-70 268.5 180 72.2
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 7.6e-58 228.8 141 74.5
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 1.3e-57 228.0 140 75.0
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 7.1e-56 222.2 124 85.5
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.4e-51 207.2 130 79.2
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 3.3e-21 107.1 128 48.4
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.7e-20 103.6 58 79.3
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 4.1e-11 73.6 332 23.5
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 1.7e-09 68.2 327 22.6


User provided reference genes

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