Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 2687.9 1354 100.0
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1960.3 1294 78.2
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1890.2 1293 74.2
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1866.3 1295 72.6
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1865.9 1294 73.0
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1861.7 1303 72.4
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1843.6 1294 72.1
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1825.8 1294 71.7
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1823.9 1294 71.9
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1811.2 1299 69.7
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1807.7 1290 71.5
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1797.7 1302 70.5
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1792.3 1309 69.8
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1785.4 1308 69.6
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1784.6 1274 71.6
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1783.1 1305 70.4
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1776.9 1384 65.8
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1766.1 1322 68.8
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1761.9 1416 65.5
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1760.0 1294 68.9
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1750.3 1293 69.8
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1736.5 1293 68.5
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1735.7 1297 68.7
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1734.5 1108 79.4
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1731.1 1297 68.4
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1730.7 1297 67.8
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1729.1 1297 68.3
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1729.1 1240 72.3
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1728.0 1297 68.0
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1725.7 1330 66.5
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1723.4 1291 68.9
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1721.4 1356 65.9
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1721.1 1293 67.6
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1720.7 1290 68.6
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1718.0 1291 68.6
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1711.8 1259 68.9
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1708.3 1296 67.9
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1698.7 1296 67.2
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1697.2 1294 66.8
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1689.1 1296 66.6
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1680.6 1296 66.2
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1679.5 1294 65.5
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1675.2 1192 71.6
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1673.7 1308 66.3
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1671.0 1297 66.7
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1657.5 1290 66.3
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1656.7 1290 65.6
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1638.2 1290 66.1
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1630.5 1306 64.9
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1626.3 1315 64.4
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1624.4 1110 74.0
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1600.9 1298 61.9
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1592.0 1307 62.8
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1591.2 1290 63.3
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1588.2 1290 63.3
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1575.5 1294 63.3
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1571.2 1290 62.7
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1566.6 1292 62.4
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1562.0 1112 71.2
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1550.8 1294 62.5
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1550.4 1361 59.4
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1548.9 1298 61.5
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1544.6 1297 62.8
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1541.9 1297 61.6
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1539.2 1298 61.4
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1536.9 1294 61.0
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1536.5 1295 61.1
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1535.8 1298 61.2
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1534.6 1299 61.0
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1533.1 1290 60.9
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1532.3 1303 60.9
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1527.7 1297 61.3
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1526.5 1298 59.8
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1526.1 1296 60.7
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1521.5 1393 59.4
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1520.8 1296 60.6
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1520.0 1302 61.3
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1511.1 1118 69.7
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1507.7 1302 60.8
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1505.0 1292 60.5
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1501.1 1087 68.9
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1496.5 1307 59.7
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1494.6 1311 58.8
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1493.4 1157 67.2
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1493.4 1289 60.2
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1469.1 1294 59.4
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1439.5 1159 64.3
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1434.1 1111 65.3
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1433.7 1293 56.5
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1420.2 1296 58.2
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1418.7 1275 58.4
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1404.4 1303 56.4
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1403.3 1083 66.0
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1402.5 1298 57.5
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1358.6 1219 59.2
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1352.4 1293 54.4
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1340.9 1277 55.3
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1337.8 1298 53.1
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1335.5 1328 54.1
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1305.0 1281 53.9
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1259.2 1302 52.2
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1178.7 1388 47.7
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 4.9e-295 1018.5 925 57.0
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 3.5e-277 959.1 846 59.5
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 3.1e-273 946.0 1363 40.0
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 2.6e-272 943.0 752 65.0
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 6.6e-268 928.3 647 70.3
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 1.5e-264 917.1 1372 40.3
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 1.3e-252 877.5 1177 42.0
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 3.7e-210 736.5 566 65.7
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 2.7e-208 730.3 1287 36.5
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 1.3e-202 711.4 921 43.5
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 5.8e-179 632.9 659 51.3
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 6.2e-165 586.3 505 64.8
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 1.1e-161 575.5 378 77.8
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 3.4e-155 553.9 349 79.4
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 4.0e-148 530.4 465 60.0
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 1.3e-127 462.2 323 71.2
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 1.0e-111 409.5 222 86.9
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 4.2e-97 360.9 1070 27.6
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.8e-92 345.5 236 74.6
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.7e-90 339.0 213 79.3
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.1e-89 336.3 476 42.2
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.7e-88 331.6 430 44.0
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 6.1e-88 330.5 289 58.8
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 3.4e-86 324.7 208 76.0
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 2.6e-78 298.5 1052 26.1
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 2.7e-67 261.9 163 73.6
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 2.6e-62 245.4 144 75.7
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.4e-60 239.6 189 59.8
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 5.4e-60 237.7 724 28.3
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 1.1e-49 203.4 167 59.9
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 3.3e-49 201.8 987 23.0
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 2.6e-46 192.2 215 46.0
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.4e-44 186.4 143 69.9
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 1.2e-40 173.3 151 59.6
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.6e-38 165.6 111 69.4
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 9.3e-36 157.1 207 42.5
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 1.2e-35 156.8 147 58.5
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 2.7e-35 155.6 390 32.6
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 6.0e-35 154.5 119 65.5
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 2.3e-34 152.5 91 80.2
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 6.6e-34 151.0 122 73.0
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.5e-33 149.1 122 56.6
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 3.1e-31 142.1 113 77.9
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 3.4e-30 138.7 179 44.1
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 2.3e-26 125.9 205 39.0
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 2.6e-22 112.5 227 35.7
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 9.9e-22 110.5 94 59.6
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.3e-21 110.2 86 61.6
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 6.0e-19 101.3 75 60.0
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 1.8e-18 99.8 85 62.4
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 2.1e-16 92.8 205 34.1
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 4.0e-15 88.6 65 61.5
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 3.4e-14 85.5 57 64.9
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 4.2e-12 78.6 87 49.4
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 2.2e-08 66.2 45 71.1
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 2.8e-08 65.9 41 68.3
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 6.3e-08 64.7 76 65.8
Lalb_Chr02g0153261 Lupinus albus HOM05D004363 ORTHO05D005110 5.3e-07 61.6 58 53.4
Lsat_1_v5_gn_5_177961 Lactuca sativa HOM05D004363 ORTHO05D005110 2.0e-06 59.7 73 43.8
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 2.6e-06 59.3 73 60.3
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 5.9e-06 58.2 78 39.7


User provided reference genes

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