Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G225200 Carya illinoinensis HOM05D000172 ORTHO05D000273 1.7e-82 309.3 157 100.0
Haze_21215 Corylus avellana HOM05D000172 ORTHO05D000273 7.2e-49 197.6 159 65.4
Cfa016990 Carpinus fangiana HOM05D000172 ORTHO05D000273 8.8e-47 190.7 159 64.8
Prupe.6G299100 Prunus persica HOM05D000172 ORTHO05D000273 1.0e-42 177.2 161 55.9
QL07p030579 Quercus lobata HOM05D000172 ORTHO05D000273 1.3e-37 160.2 158 55.7
QL07p031468 Quercus lobata HOM05D000172 ORTHO05D000273 1.3e-37 160.2 158 55.7
MD04G1179300 Malus domestica HOM05D000172 ORTHO05D000273 1.7e-37 159.8 161 50.9
TWI74G1663 Tripterygium wilfordii HOM05D000172 ORTHO05D000273 6.3e-37 157.9 156 51.9
Ciclev10012748m.g Citrus clementina HOM05D000172 ORTHO05D000273 2.4e-36 156.0 161 53.4
VMungo1383G1980 Vigna mungo HOM05D000172 ORTHO05D000273 4.1e-36 155.2 161 50.9
Cpa.g.sc60.58 Carica papaya HOM05D000172 ORTHO05D000273 1.2e-35 153.7 156 50.0
MD12G1194400 Malus domestica HOM05D000172 ORTHO05D000273 1.2e-35 153.7 161 48.4
Lj1g0007760 Lotus japonicus HOM05D000172 ORTHO05D000273 4.5e-35 151.8 161 49.1
Dinv25376 Davidia involucrata HOM05D000172 ORTHO05D000273 1.7e-34 149.8 157 52.2
RcHm_v2.0_Chr3g0459661 Rosa chinensis HOM05D000172 ORTHO05D000273 1.7e-34 149.8 159 47.2
GSVIVG01029849001 Vitis vinifera HOM05D000172 ORTHO05D000273 1.7e-34 149.8 159 45.9
Thecc.04G001300 Theobroma cacao HOM05D000172 ORTHO05D000273 5.0e-34 148.3 159 48.4
FvH4_6g09280 Fragaria vesca HOM05D000172 ORTHO05D000273 6.5e-34 147.9 161 48.4
FAN14G3495 Fragaria x ananassa HOM05D000172 ORTHO05D000273 1.1e-33 147.1 161 48.4
FAN05G2356 Fragaria x ananassa HOM05D000172 ORTHO05D000273 2.5e-33 146.0 161 48.4
FAN09G0841 Fragaria x ananassa HOM05D000172 ORTHO05D000273 2.5e-33 146.0 161 48.4
Lalb_Chr01g0024011 Lupinus albus HOM05D000172 ORTHO05D000273 2.5e-33 146.0 161 49.7
Glyma.18G218700 Glycine max HOM05D000172 ORTHO05D000273 3.2e-33 145.6 161 49.1
Sabra04G0158400 Salix brachista HOM05D000172 ORTHO05D000273 5.5e-33 144.8 159 45.3
Potri.006G112700 Populus trichocarpa HOM05D000172 ORTHO05D000273 1.2e-32 143.7 156 47.4
Manes.09G120500 Manihot esculenta HOM05D000172 ORTHO05D000273 2.1e-32 142.9 159 47.2
Phvul.008G078400 Phaseolus vulgaris HOM05D000172 ORTHO05D000273 4.7e-32 141.7 161 47.8
TPR.G24308 Trifolium pratense HOM05D000172 ORTHO05D000273 4.7e-32 141.7 156 46.2
PSO384G2764 Papaver somniferum HOM05D000172 ORTHO05D000273 2.3e-31 139.4 156 43.6
Medtr7g074250 Medicago truncatula HOM05D000172 ORTHO05D000273 4.0e-31 138.7 156 43.6
Potri.016G142200 Populus trichocarpa HOM05D000172 ORTHO05D000273 4.0e-31 138.7 156 44.2
AUR62006458 Chenopodium quinoa HOM05D000172 ORTHO05D000273 7.5e-30 134.4 159 44.0
CANSAT80G1389 Cannabis sativa HOM05D000172 ORTHO05D000273 8.2e-29 131.0 154 44.8
AUR62029814 Chenopodium quinoa HOM05D000172 ORTHO05D000273 1.1e-28 130.6 159 42.8
PGR004G0213 Punica granatum HOM05D000172 ORTHO05D000273 1.8e-28 129.8 156 42.3
TAR636G2946 Trochodendron aralioides HOM05D000172 ORTHO05D000273 1.8e-28 129.8 156 46.8
Eucgr.K01310 Eucalyptus grandis HOM05D000172 ORTHO05D000273 2.4e-28 129.4 158 44.9
Nn5g26756 Nelumbo nucifera HOM05D000172 ORTHO05D000273 3.1e-28 129.0 144 48.6
EL10Ac7g17145 Beta vulgaris HOM05D000172 ORTHO05D000273 1.6e-27 126.7 157 43.3
Manes.08G167200 Manihot esculenta HOM05D000172 ORTHO05D000273 1.6e-27 126.7 146 47.9
MBI03_g16539_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D000273 3.5e-27 125.6 159 40.3
Sc07g0006000 Simmondsia chinensis HOM05D000172 ORTHO05D000273 3.5e-27 125.6 163 47.2
Ah.06g188010 Amaranthus hybridus HOM05D000172 ORTHO05D000273 4.5e-27 125.2 162 43.2
Psat3g116880 Pisum sativum HOM05D000172 ORTHO05D000273 7.2e-25 117.9 161 42.2
Aqoxy2G00683 Aquilegia oxysepala HOM05D000172 ORTHO05D000273 4.7e-24 115.2 156 39.7
CDE04G1691 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 2.6e-22 109.4 151 37.7
CDE12G0795 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 3.1e-20 102.4 125 45.6
CARHR164130 Cardamine hirsuta HOM05D000172 ORTHO05D000273 1.6e-19 100.1 142 36.6
HPP92_019041 Vanilla planifolia HOM05D000172 ORTHO05D000273 1.0e-18 97.4 156 34.6
Os11g0120100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D000273 5.0e-18 95.1 157 34.4
Os12g0119800 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D000273 5.0e-18 95.1 157 34.4
Aqoxy2G02095 Aquilegia oxysepala HOM05D000172 ORTHO05D000273 6.5e-18 94.7 158 37.3
Zm00001eb093800 Zea mays HOM05D000172 ORTHO05D000273 1.5e-17 93.6 157 33.8
Sp3g04910 Schrenkiella parvula HOM05D000172 ORTHO05D000273 4.7e-16 88.6 156 34.0
AT3G05975 Arabidopsis thaliana HOM05D000172 ORTHO05D000273 1.0e-15 87.4 156 33.3
ATR1127G037 Amborella trichopoda HOM05D000172 ORTHO05D000273 1.4e-15 87.0 108 41.7
Thhalv10022344m.g Eutrema salsugineum HOM05D000172 ORTHO05D000273 1.4e-15 87.0 156 32.7
C05p61290 Brassica napus HOM05D000172 ORTHO05D000273 1.8e-15 86.7 156 32.7
BolC5t34788H Brassica oleracea HOM05D000172 ORTHO05D000273 1.8e-15 86.7 156 32.7
BraA05t22926Z Brassica rapa HOM05D000172 ORTHO05D000273 1.8e-15 86.7 156 32.7
BcaC05g30073 Brassica carinata HOM05D000172 ORTHO05D000273 4.0e-15 85.5 156 32.1
A05p42060 Brassica napus HOM05D000172 ORTHO05D000273 5.2e-15 85.1 156 32.1
Os05g0482501 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D000273 8.9e-15 84.3 159 33.3
BraA01t04458Z Brassica rapa HOM05D000172 ORTHO05D000273 1.2e-14 84.0 156 32.7
AL3G16780 Arabidopsis lyrata HOM05D000172 ORTHO05D000273 2.6e-14 82.8 156 32.7
Carub.0003s0538 Capsella rubella HOM05D000172 ORTHO05D000273 4.4e-14 82.0 156 31.4
CARHR080480 Cardamine hirsuta HOM05D000172 ORTHO05D000273 4.4e-14 82.0 156 29.5
Aa31sc488G30 Aethionema arabicum HOM05D000172 ORTHO05D000273 4.9e-13 78.6 150 35.3
BcaC09g47868 Brassica carinata HOM05D000172 ORTHO05D000273 4.9e-13 78.6 156 30.1
BolC1t05646H Brassica oleracea HOM05D000172 ORTHO05D000273 4.9e-13 78.6 156 30.1
HPP92_003274 Vanilla planifolia HOM05D000172 ORTHO05D000273 6.3e-13 78.2 153 32.0
THA.LOC104806281 Tarenaya hassleriana HOM05D000172 ORTHO05D000273 1.2e-11 73.9 160 32.5
Prupe.6G299500 Prunus persica HOM05D000172 ORTHO05D000273 1.6e-11 73.6 158 32.3
Atru.chr8.48 Acer truncatum HOM05D000172 ORTHO05D000273 7.8e-11 71.2 158 29.7
MD12G1194600 Malus domestica HOM05D000172 ORTHO05D000273 1.0e-10 70.9 159 31.4
Manes.09G120400 Manihot esculenta HOM05D000172 ORTHO05D000273 1.7e-10 70.1 158 31.6
SGA_v2.0_scaffold373G50204 Striga asiatica HOM05D000172 ORTHO05D000273 3.8e-10 68.9 147 30.6
AT3G54200 Arabidopsis thaliana HOM05D000172 ORTHO05D000273 5.0e-10 68.6 155 34.2
AL5G35240 Arabidopsis lyrata HOM05D000172 ORTHO05D000273 6.6e-10 68.2 150 33.3
MSTRG.6963 Avicennia marina HOM05D000172 ORTHO05D000273 6.6e-10 68.2 156 32.1
Sc07g0006080 Simmondsia chinensis HOM05D000172 ORTHO05D000273 6.6e-10 68.2 68 52.9
CARHR164120 Cardamine hirsuta HOM05D000172 ORTHO05D000273 1.1e-09 67.4 154 34.4
SEGI_16971 Sequoiadendron giganteum HOM05D000172 ORTHO05D000273 1.9e-09 66.6 160 30.6
Carub.0005s2079 Capsella rubella HOM05D000172 ORTHO05D000273 5.6e-09 65.1 150 33.3
ATR1127G172 Amborella trichopoda HOM05D000172 ORTHO05D000273 7.3e-09 64.7 150 29.3
PGSC0003DMG401027691 Solanum tuberosum HOM05D000172 ORTHO05D000273 9.5e-09 64.3 157 28.0
MD04G1179500 Malus domestica HOM05D000172 ORTHO05D000273 1.2e-08 63.9 158 30.4
Thecc.04G170100 Theobroma cacao HOM05D000172 ORTHO05D000273 1.6e-08 63.5 134 30.6
Zm00001eb043330 Zea mays HOM05D000172 ORTHO05D000273 2.1e-08 63.2 156 28.2
PGR004G0730 Punica granatum HOM05D000172 ORTHO05D000273 2.8e-08 62.8 134 32.1
ClCG02G019140 Citrullus lanatus HOM05D000172 ORTHO05D000273 3.6e-08 62.4 133 30.8
Lj3g0005630 Lotus japonicus HOM05D000172 ORTHO05D000273 3.6e-08 62.4 158 25.9
Aa31LG11G12460 Aethionema arabicum HOM05D000172 ORTHO05D000273 6.1e-08 61.6 150 30.0
MSTRG.18924 Avicennia marina HOM05D000172 ORTHO05D000273 6.1e-08 61.6 156 30.8
Sopen10g027220 Solanum pennellii HOM05D000172 ORTHO05D000273 6.1e-08 61.6 157 27.4
Migut.J00005 Erythranthe guttata HOM05D000172 ORTHO05D000273 8.0e-08 61.2 161 31.1
Manes.08G167100 Manihot esculenta HOM05D000172 ORTHO05D000273 8.0e-08 61.2 158 27.2
SEGI_06883 Sequoiadendron giganteum HOM05D000172 ORTHO05D000273 8.0e-08 61.2 134 30.6
SEGI_21543 Sequoiadendron giganteum HOM05D000172 ORTHO05D000273 8.0e-08 61.2 155 29.7
Solyc10g074730.3 Solanum lycopersicum HOM05D000172 ORTHO05D000273 8.0e-08 61.2 157 27.4
arahy.Tifrunner.gnm1.ann1.GQ7PCB Arachis hypogaea HOM05D000172 ORTHO05D000273 1.0e-07 60.8 135 31.1
CANSAT78G1744 Cannabis sativa HOM05D000172 ORTHO05D000273 1.0e-07 60.8 160 28.8
CDE07G1919 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 1.0e-07 60.8 158 27.8
Eucgr.K01311 Eucalyptus grandis HOM05D000172 ORTHO05D000273 1.0e-07 60.8 131 30.5
Nitab4.5_0000274g0180 Nicotiana tabacum HOM05D000172 ORTHO05D000273 1.8e-07 60.1 159 31.4
QL07p031488 Quercus lobata HOM05D000172 ORTHO05D000273 1.8e-07 60.1 157 29.9
arahy.Tifrunner.gnm1.ann1.K3DWLG Arachis hypogaea HOM05D000172 ORTHO05D000273 2.3e-07 59.7 135 30.4
CiPaw.10G068700 Carya illinoinensis HOM05D000172 ORTHO05D000273 2.3e-07 59.7 129 31.0
Nitab4.5_0002298g0020 Nicotiana tabacum HOM05D000172 ORTHO05D000273 2.3e-07 59.7 140 32.9
Psat2g191160 Pisum sativum HOM05D000172 ORTHO05D000273 2.3e-07 59.7 135 30.4
Solyc09g031920.1 Solanum lycopersicum HOM05D000172 ORTHO05D000273 2.3e-07 59.7 159 31.4
Cc02_g38650 Coffea canephora HOM05D000172 ORTHO05D000273 3.0e-07 59.3 155 29.7
PGSC0003DMG400037897 Solanum tuberosum HOM05D000172 ORTHO05D000273 3.0e-07 59.3 155 29.0
QL07p030569 Quercus lobata HOM05D000172 ORTHO05D000273 4.0e-07 58.9 156 30.1
Nitab4.5_0008719g0010 Nicotiana tabacum HOM05D000172 ORTHO05D000273 5.2e-07 58.5 159 31.4
FvH4_6g09270 Fragaria vesca HOM05D000172 ORTHO05D000273 6.8e-07 58.2 133 30.1
FAN09G3345 Fragaria x ananassa HOM05D000172 ORTHO05D000273 6.8e-07 58.2 133 30.1
FAN14G1210 Fragaria x ananassa HOM05D000172 ORTHO05D000273 6.8e-07 58.2 133 30.1
Hma1.2p1_0805F.1_g221120 Hydrangea macrophylla HOM05D000172 ORTHO05D000273 6.8e-07 58.2 158 29.1
PGSC0003DMG400020863 Solanum tuberosum HOM05D000172 ORTHO05D000273 6.8e-07 58.2 159 31.4
Cpa.g.sc60.57 Carica papaya HOM05D000172 ORTHO05D000273 8.9e-07 57.8 150 26.7
A07p22030 Brassica napus HOM05D000172 ORTHO05D000273 1.2e-06 57.4 154 27.9
Medtr8g028475 Medicago truncatula HOM05D000172 ORTHO05D000273 1.2e-06 57.4 139 29.5
Oeu026920.1 Olea europaea HOM05D000172 ORTHO05D000273 1.2e-06 57.4 133 33.1
Glyma.01G239100 Glycine max HOM05D000172 ORTHO05D000273 1.5e-06 57.0 154 32.5
Oeu019820.1 Olea europaea HOM05D000172 ORTHO05D000273 1.5e-06 57.0 157 29.3
Actinidia28479 Actinidia chinensis HOM05D000172 ORTHO05D000273 2.0e-06 56.6 129 31.0
BcaB02g07744 Brassica carinata HOM05D000172 ORTHO05D000273 2.0e-06 56.6 155 27.7
CANSAT94G0009 Cannabis sativa HOM05D000172 ORTHO05D000273 2.0e-06 56.6 131 32.8
CAN.G110.10 Capsicum annuum HOM05D000172 ORTHO05D000273 2.0e-06 56.6 157 31.2
Glyma.16G221900 Glycine max HOM05D000172 ORTHO05D000273 2.0e-06 56.6 159 27.7
Sc07g0006110 Simmondsia chinensis HOM05D000172 ORTHO05D000273 2.0e-06 56.6 159 27.0
Sopen09g026000 Solanum pennellii HOM05D000172 ORTHO05D000273 2.0e-06 56.6 159 30.2
TPR.G30721 Trifolium pratense HOM05D000172 ORTHO05D000273 2.0e-06 56.6 135 28.9
CAN.G756.33 Capsicum annuum HOM05D000172 ORTHO05D000273 2.6e-06 56.2 157 30.6
CiPaw.01G068400 Carya illinoinensis HOM05D000172 ORTHO05D000273 2.6e-06 56.2 129 28.7
Haze_08739 Corylus avellana HOM05D000172 ORTHO05D000273 2.6e-06 56.2 128 28.9
Gohir.A02G092000 Gossypium hirsutum HOM05D000172 ORTHO05D000273 2.6e-06 56.2 140 27.1
MBI18_g03011_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D000273 2.6e-06 56.2 137 32.1
PSO384G4935 Papaver somniferum HOM05D000172 ORTHO05D000273 2.6e-06 56.2 132 27.3
Phvul.010G105100 Phaseolus vulgaris HOM05D000172 ORTHO05D000273 2.6e-06 56.2 129 28.7
PGR031G0035 Punica granatum HOM05D000172 ORTHO05D000273 2.6e-06 56.2 124 28.2
TAR636G1394 Trochodendron aralioides HOM05D000172 ORTHO05D000273 2.6e-06 56.2 131 30.5
C06p22010 Brassica napus HOM05D000172 ORTHO05D000273 3.4e-06 55.8 154 27.9
CSS0041751 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000273 3.4e-06 55.8 137 33.6
CiPaw.04G114700 Carya illinoinensis HOM05D000172 ORTHO05D000273 3.4e-06 55.8 133 31.6
Nitab4.5_0000274g0190 Nicotiana tabacum HOM05D000172 ORTHO05D000273 3.4e-06 55.8 135 32.6
Pp3c23_20760 Physcomitrium patens HOM05D000172 ORTHO05D000273 3.4e-06 55.8 128 26.6
MELO3C026872.2 Cucumis melo HOM05D000172 ORTHO05D000273 4.4e-06 55.5 132 25.8
HanXRQChr13g0394631 Helianthus annuus HOM05D000172 ORTHO05D000273 4.4e-06 55.5 114 32.5
Lj7P506T63 Lonicera japonica HOM05D000172 ORTHO05D000273 4.4e-06 55.5 129 31.8
GSVIVG01026977001 Vitis vinifera HOM05D000172 ORTHO05D000273 4.4e-06 55.5 131 29.8
CSS0010033 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000273 5.8e-06 55.1 137 32.8
Cfa000262 Carpinus fangiana HOM05D001306 ORTHO05D001159 5.8e-06 55.1 138 31.2
Ciclev10018014m.g Citrus clementina HOM05D000172 ORTHO05D000273 5.8e-06 55.1 161 28.6
MD01G1072100 Malus domestica HOM05D000172 ORTHO05D000273 5.8e-06 55.1 129 31.8
Nn7g37308 Nelumbo nucifera HOM05D000172 ORTHO05D000273 5.8e-06 55.1 156 28.8
DCAR_003037 Daucus carota HOM05D000172 ORTHO05D000273 7.5e-06 54.7 135 28.9
Gohir.D02G108800 Gossypium hirsutum HOM05D000172 ORTHO05D000273 7.5e-06 54.7 159 25.8
Gorai.005G124900 Gossypium raimondii HOM05D000172 ORTHO05D000273 7.5e-06 54.7 159 25.8
Lalb_Chr13g0290311 Lupinus albus HOM05D000172 ORTHO05D000273 7.5e-06 54.7 158 25.9
QL09p003303 Quercus lobata HOM05D000172 ORTHO05D000273 7.5e-06 54.7 138 26.8
SalBow3G0578 Salvia bowleyana HOM05D000172 ORTHO05D000273 7.5e-06 54.7 138 32.6
SMO119G0408 Selaginella moellendorffii HOM05D000172 ORTHO05D000273 7.5e-06 54.7 154 26.6
MSTRG.22688 Avicennia marina HOM05D003111 ORTHO05D003502 9.8e-06 54.3 126 33.3


User provided reference genes

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