Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1629.0 817 100.0
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1400.6 813 86.5
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1345.1 797 85.4
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1304.3 810 80.9
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1303.1 813 80.6
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1301.2 811 79.7
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1300.8 811 80.5
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1297.0 811 79.5
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1296.6 812 80.5
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1288.9 811 79.7
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1288.5 811 79.0
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1285.4 810 79.1
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1283.1 814 79.1
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1281.2 810 78.0
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1280.0 814 81.0
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1275.0 812 79.1
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1270.4 811 77.8
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1267.7 811 77.6
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1264.6 813 78.4
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1263.4 811 77.4
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1258.8 822 78.0
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1258.4 813 77.7
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1258.4 812 78.0
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1255.4 815 77.3
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1254.6 822 77.6
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1253.4 822 77.7
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1248.8 848 75.6
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1248.8 812 77.1
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1247.6 814 77.5
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1246.9 812 76.6
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1246.5 812 77.8
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1245.0 811 76.7
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1245.0 812 76.7
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1244.2 812 76.7
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1243.4 813 76.5
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1242.6 813 76.6
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1241.9 812 76.6
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1235.7 815 77.2
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1234.6 814 76.7
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1231.5 811 76.3
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1231.1 813 75.8
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1229.9 812 75.6
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1228.8 813 75.4
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1228.4 815 76.8
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1228.0 814 75.8
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1227.6 811 75.8
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1227.6 812 75.9
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1226.5 816 75.9
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1220.3 812 75.9
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1218.4 814 75.7
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1206.0 910 69.3
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1204.1 873 70.9
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1202.2 810 75.3
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1200.7 844 73.2
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1194.5 811 74.7
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1191.8 811 74.2
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1186.4 789 75.4
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1181.4 811 74.0
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1180.6 814 73.5
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1175.2 815 73.3
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1168.7 817 74.3
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1168.7 788 75.4
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1165.2 815 72.3
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1158.7 812 72.5
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1151.7 807 71.9
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1145.6 750 76.9
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1127.9 810 70.7
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1123.2 811 70.4
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1122.5 804 73.4
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1122.1 811 70.5
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1120.9 811 69.5
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1118.6 846 69.1
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1117.8 813 69.6
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1115.9 871 67.0
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1115.5 810 69.5
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1107.0 812 69.5
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1099.0 812 69.3
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1099.0 788 71.6
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1091.3 812 68.7
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1086.6 811 67.8
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1076.6 812 67.9
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 0.0e+00 1075.8 789 69.7
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 5.6e-312 1074.3 790 69.4
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 2.2e-311 1072.0 811 67.0
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 2.2e-311 1072.0 815 65.4
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 1.5e-307 1059.3 822 69.0
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 2.6e-307 1058.5 816 66.8
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 7.5e-307 1057.0 812 68.7
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 7.0e-305 1050.4 812 65.8
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 9.1e-305 1050.0 813 67.8
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 6.5e-303 1043.9 798 65.0
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 3.2e-302 1041.6 827 65.5
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 5.7e-299 1030.8 817 64.5
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 1.9e-281 972.6 812 62.7
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 7.5e-267 924.1 707 67.8
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 2.3e-255 885.9 679 68.8
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 1.4e-252 876.7 599 74.5
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 6.4e-250 867.8 645 68.4
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 1.5e-243 846.7 812 53.2
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 7.1e-233 811.2 835 50.7
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 2.0e-227 793.1 551 74.2
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.2e-216 757.3 501 77.4
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.3e-214 748.8 500 76.8
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 1.5e-211 740.3 559 68.2
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 7.0e-196 688.3 445 76.2
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 5.9e-195 685.3 828 47.3
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 5.2e-191 672.2 533 65.3
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 1.5e-182 644.0 817 47.4
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 3.5e-179 632.9 406 76.8
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 1.0e-167 594.7 387 77.3
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 1.4e-167 594.3 415 73.0
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 5.4e-164 582.4 552 54.5
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 1.9e-156 557.4 633 47.7
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.0e-122 445.3 267 82.0
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 6.9e-95 352.8 241 74.7
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 2.5e-92 344.4 216 80.1
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.2e-92 343.6 339 57.2
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 1.3e-80 305.4 238 63.9
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 7.2e-76 289.7 179 79.9
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 4.8e-72 276.9 207 67.6
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 3.0e-66 257.7 174 71.8
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 1.7e-61 241.9 249 52.6
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 1.1e-55 222.6 216 51.4
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 2.3e-34 151.8 96 79.2
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 4.9e-32 144.1 82 87.8
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-24 117.9 268 32.5
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 7.8e-22 110.2 414 25.1
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 4.8e-19 100.9 58 87.9
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 8.1e-19 100.1 108 52.8
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 8.4e-16 90.1 69 68.1
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 6.2e-11 73.9 42 85.7
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 3.4e-09 68.2 37 86.5
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 5.8e-09 67.4 165 33.3


User provided reference genes

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