Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 0.0e+00 2385.1 1226 100.0
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 0.0e+00 1748.8 1243 74.2
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 0.0e+00 1368.2 1242 59.7
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 0.0e+00 1317.0 1247 58.5
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 0.0e+00 1261.5 1237 56.8
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 0.0e+00 1257.3 1248 56.2
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 0.0e+00 1251.1 1272 54.8
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 0.0e+00 1246.5 1243 56.4
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 0.0e+00 1240.3 1220 56.5
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 0.0e+00 1228.8 1219 55.7
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 0.0e+00 1215.3 1240 56.3
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 0.0e+00 1204.1 1217 56.5
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 0.0e+00 1182.9 1232 55.4
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 0.0e+00 1176.0 1231 53.4
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 0.0e+00 1164.8 941 63.7
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 0.0e+00 1144.0 1092 58.1
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 0.0e+00 1084.3 1294 48.8
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 0.0e+00 1080.5 1286 48.1
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 2.5e-311 1072.4 1223 50.0
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 7.5e-311 1070.8 833 64.5
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 3.1e-309 1065.4 1179 50.2
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 7.8e-308 1060.8 1234 50.2
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 6.6e-307 1057.7 1240 49.5
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 1.9e-306 1056.2 932 60.0
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 1.7e-299 1033.1 1270 48.5
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 3.0e-299 1032.3 1253 49.9
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 6.8e-296 1021.1 1125 51.1
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 3.7e-294 1015.4 1232 48.4
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 1.6e-292 1010.0 1244 49.6
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 1.2e-287 993.8 1265 45.5
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 1.9e-285 986.5 1231 48.3
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 1.7e-283 979.9 862 60.0
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 3.4e-279 965.7 1210 47.3
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 2.4e-277 959.5 836 59.1
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 1.1e-274 950.7 1025 53.3
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 1.8e-272 943.3 1228 45.6
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 9.0e-272 941.0 1140 48.4
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 6.9e-264 914.8 1003 52.9
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 1.5e-263 913.7 1220 46.6
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 3.4e-263 912.5 1217 47.6
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 4.5e-263 912.1 1215 45.6
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 2.1e-260 903.3 1309 42.9
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 2.7e-260 902.9 1025 50.3
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 7.9e-260 901.4 1213 45.0
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 1.8e-259 900.2 1208 44.9
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 5.1e-259 898.7 925 53.5
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 2.4e-256 889.8 1213 44.8
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 6.4e-254 881.7 1025 49.9
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 2.1e-249 866.7 723 62.1
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 8.2e-241 838.2 1117 44.3
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 3.1e-240 836.3 996 49.8
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 2.6e-239 833.2 823 53.7
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 5.9e-239 832.0 823 54.1
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 1.3e-238 830.9 1186 43.8
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 6.7e-235 818.5 839 52.8
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 6.7e-235 818.5 858 51.7
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 7.7e-231 805.1 1218 41.8
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 5.7e-226 788.9 1122 43.5
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 8.8e-219 765.0 1237 40.6
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 2.0e-218 763.8 861 51.1
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 1.0e-203 714.9 1238 38.5
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 5.9e-199 699.1 1214 40.6
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 3.0e-195 686.8 1213 41.5
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 3.4e-194 683.3 643 56.3
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 4.1e-192 676.4 1204 37.4
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 5.6e-181 639.4 812 47.5
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 9.2e-176 622.1 981 40.0
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 3.3e-173 613.6 838 45.6
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 1.5e-170 604.7 1158 35.2
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 2.6e-170 604.0 878 40.2
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 1.7e-161 574.7 871 39.4
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 5.6e-157 559.7 441 64.4
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 1.7e-153 548.1 754 39.9
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 2.1e-151 541.2 514 56.4
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 3.6e-148 530.4 671 45.0
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 3.5e-143 513.8 486 56.4
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 8.5e-97 359.8 628 37.9
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 5.0e-81 307.4 360 45.3
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 7.2e-80 303.5 752 31.8
Atru.chr8.2197 Acer truncatum HOM05D007125 ORTHO05D008766 1.7e-76 292.4 188 74.5
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 5.6e-72 277.3 887 27.7
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 1.4e-59 236.1 563 34.5
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 3.3e-56 224.9 593 30.9
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 4.7e-55 221.1 223 52.9
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 1.4e-54 219.5 223 52.5
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 1.5e-53 216.1 223 52.0
TPR.G40809 Trifolium pratense HOM05D007125 ORTHO05D008766 1.1e-40 173.3 371 34.2
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 6.2e-39 167.5 579 28.3
MSTRG.19029 Avicennia marina HOM05D007125 ORTHO05D008766 4.3e-32 144.8 101 68.3
BolC1t05511H Brassica oleracea HOM05D007125 ORTHO05D008766 5.6e-32 144.4 148 54.1
Sc01g0006780 Simmondsia chinensis HOM05D007125 ORTHO05D008766 4.5e-29 134.8 111 64.0
Actinidia13779 Actinidia chinensis HOM05D007125 ORTHO05D008766 7.9e-26 124.0 92 72.8
CSS0006466 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 3.0e-25 122.1 90 72.2
VMungo1383G1324 Vigna mungo HOM05D007125 ORTHO05D008766 6.7e-25 120.9 88 69.3
Lalb_Chr03g0042981 Lupinus albus HOM05D007125 ORTHO05D008766 5.6e-24 117.9 81 71.6
Cfa025266 Carpinus fangiana HOM05D007125 ORTHO05D008766 9.6e-24 117.1 640 23.3
Eucgr.B02785 Eucalyptus grandis HOM05D007125 ORTHO05D008766 9.6e-24 117.1 344 31.7
Hma1.2p1_0763F.1_g214650 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 1.4e-22 113.2 216 38.0
MBI05_g03454_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 2.7e-18 99.0 263 31.2
MBI11_g31733_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 1.1e-16 93.6 59 69.5
TPR.G1592 Trifolium pratense HOM05D007125 ORTHO05D008766 1.3e-15 90.1 106 44.3
MCO11G281 Micromonas commoda HOM05D015011 ORTHO05D017325 6.3e-15 87.8 728 23.5
unitig_27.g24820 Utricularia gibba HOM05D007125 ORTHO05D008766 5.3e-14 84.7 77 55.8
BcaC09g47967 Brassica carinata HOM05D007125 ORTHO05D008766 3.8e-12 78.6 57 70.2
PRCOL_00005200 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 1.1e-11 77.0 173 35.8
MCO06G281 Micromonas commoda HOM05D037949 ORTHO05D034420 3.2e-11 75.5 299 28.8
Sed0021710 Sechium edule HOM05D007125 ORTHO05D008766 5.5e-11 74.7 69 55.1
Cre14.g613400 Chlamydomonas reinhardtii HOM05D037949 ORTHO05D034420 7.9e-10 70.9 200 28.0
CARHR083440 Cardamine hirsuta HOM05D007125 ORTHO05D008766 1.1e-08 67.0 191 28.3
AagrBONN_evm.TU.Sc2ySwM_362.2826 Anthoceros agrestis HOM05D014975 ORTHO05D016505 4.8e-07 61.6 152 30.3
PRCOL_00002272 Prasinoderma coloniale HOM05D037949 ORTHO05D034420 4.8e-07 61.6 176 27.3
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 1.8e-06 59.7 165 29.1


User provided reference genes

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