Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 3.9e-240 834.3 409 100.0
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 3.3e-231 804.7 409 95.8
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 4.8e-230 800.8 405 95.6
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 2.4e-229 798.5 409 94.6
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 4.1e-229 797.7 409 94.4
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 7.0e-229 797.0 408 93.9
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.1e-225 785.4 409 92.4
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 3.6e-225 784.6 409 92.9
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.0e-224 783.1 409 91.9
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 1.4e-224 782.7 409 92.4
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 6.7e-224 780.4 409 91.7
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.2e-223 779.6 409 91.7
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 2.2e-222 775.4 408 91.2
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 4.8e-222 774.2 409 90.5
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 7.0e-221 770.4 406 90.9
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 7.0e-221 770.4 406 90.9
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 1.2e-220 769.6 404 91.3
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.2e-220 769.6 406 90.9
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 1.2e-220 769.6 406 91.1
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 2.0e-220 768.8 409 90.2
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 2.0e-220 768.8 409 89.0
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 2.7e-220 768.5 409 89.7
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 4.5e-220 767.7 406 90.4
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 5.9e-220 767.3 406 90.1
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 5.9e-220 767.3 409 89.2
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 5.9e-220 767.3 406 90.6
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 1.0e-219 766.5 409 90.5
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.0e-219 766.5 409 90.0
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 1.7e-219 765.8 406 90.4
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 1.7e-219 765.8 409 89.5
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 2.2e-219 765.4 406 89.7
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 2.2e-219 765.4 406 90.1
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 2.9e-219 765.0 409 89.7
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 3.8e-219 764.6 410 89.5
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 3.8e-219 764.6 406 90.4
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.8e-219 764.6 406 89.7
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 5.0e-219 764.2 406 89.9
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 5.0e-219 764.2 404 89.6
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 5.0e-219 764.2 409 89.0
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 5.0e-219 764.2 406 90.9
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 6.5e-219 763.8 409 89.5
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 8.5e-219 763.5 404 89.4
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 1.5e-218 762.7 406 89.9
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 1.9e-218 762.3 406 89.4
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 1.9e-218 762.3 409 89.5
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 3.2e-218 761.5 409 89.0
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 5.5e-218 760.8 409 88.5
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 1.2e-217 759.6 406 89.7
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.2e-217 759.6 409 89.2
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 1.2e-217 759.6 404 88.6
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 1.6e-217 759.2 407 88.9
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 1.6e-217 759.2 404 90.3
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 1.6e-217 759.2 404 88.9
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 2.7e-217 758.4 405 89.4
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 2.7e-217 758.4 406 89.4
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.7e-217 757.7 406 89.2
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 4.7e-217 757.7 406 89.4
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 4.7e-217 757.7 404 88.6
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 8.0e-217 756.9 448 83.0
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 8.0e-217 756.9 405 88.1
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 1.4e-216 756.1 409 88.5
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.4e-216 756.1 406 88.9
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 1.4e-216 756.1 411 89.3
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 1.8e-216 755.7 406 89.2
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 2.3e-216 755.4 406 88.7
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.2e-215 753.1 406 88.4
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 2.6e-215 751.9 406 88.7
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 3.4e-215 751.5 425 86.1
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 5.7e-215 750.7 409 86.1
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 7.5e-215 750.4 404 88.4
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 7.5e-215 750.4 409 86.8
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 9.8e-215 750.0 410 87.8
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 1.7e-214 749.2 407 87.2
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 2.2e-214 748.8 409 86.1
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 2.2e-214 748.8 406 88.2
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 3.7e-214 748.0 409 86.1
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 4.8e-214 747.7 409 86.6
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 8.3e-214 746.9 406 87.9
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 8.3e-214 746.9 409 86.6
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 8.3e-214 746.9 410 87.1
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 1.1e-213 746.5 409 86.8
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 1.1e-213 746.5 410 87.1
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.8e-213 745.7 452 81.4
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 2.4e-213 745.3 409 86.1
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 3.1e-213 745.0 409 86.1
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 5.4e-213 744.2 436 83.7
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 9.1e-213 743.4 409 86.3
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 9.1e-213 743.4 409 86.3
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 9.1e-213 743.4 409 86.1
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 9.1e-213 743.4 421 85.7
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 9.1e-213 743.4 407 88.0
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 2.0e-212 742.3 409 85.8
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 3.5e-212 741.5 396 89.1
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 3.5e-212 741.5 409 86.1
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 4.5e-212 741.1 409 86.1
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.7e-211 739.2 409 84.4
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 2.9e-211 738.4 409 84.6
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 5.0e-211 737.6 410 85.6
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 5.0e-211 737.6 410 85.6
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 1.1e-210 736.5 409 85.3
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.1e-210 736.5 406 86.2
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 1.5e-210 736.1 410 85.6
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 5.5e-210 734.2 406 86.5
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.2e-209 733.0 406 86.5
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 2.1e-209 732.3 405 85.2
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 2.1e-209 732.3 476 76.9
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 3.4e-207 724.9 377 91.8
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.7e-206 722.6 406 83.5
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 4.9e-206 721.1 406 83.5
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 6.3e-206 720.7 520 71.2
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 3.1e-205 718.4 385 88.6
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 2.7e-204 715.3 405 83.0
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 7.8e-204 713.8 381 89.5
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 5.6e-202 707.6 452 75.4
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 3.6e-201 704.9 415 83.1
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 1.5e-199 699.5 413 81.8
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 3.4e-199 698.4 385 87.0
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 1.3e-198 696.4 358 93.9
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 3.7e-198 694.9 410 82.0
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 1.8e-192 676.0 409 78.2
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 6.8e-192 674.1 356 89.9
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 3.7e-190 668.3 403 80.1
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 5.4e-189 664.5 358 88.0
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 1.5e-186 656.4 402 78.6
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 3.4e-183 645.2 406 78.1
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 4.4e-175 618.2 406 74.1
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.4e-173 613.2 404 72.0
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 9.2e-173 610.5 405 70.6
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 7.8e-172 607.4 320 90.0
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 1.2e-169 600.1 380 72.4
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 6.0e-164 581.3 376 72.6
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 9.6e-162 573.9 387 75.2
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 4.9e-158 561.6 409 69.2
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 8.4e-150 534.3 318 81.1
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.3e-147 526.2 310 84.5
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 4.9e-142 508.4 400 62.2
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 4.6e-132 475.3 283 82.7
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 4.8e-129 465.3 258 85.3
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 5.0e-126 455.3 368 62.0
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 3.1e-120 436.0 238 87.4
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 6.5e-118 428.3 385 55.6
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.6e-116 423.7 225 89.3
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 1.2e-108 397.5 239 79.1
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 1.2e-100 370.9 197 89.3
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 4.6e-79 299.3 404 43.8
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 3.4e-74 283.1 390 43.6
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 2.2e-73 280.4 183 75.4
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.5e-69 267.7 180 71.7
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 1.7e-57 227.6 141 73.8
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 2.9e-57 226.9 140 74.3
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 4.9e-57 226.1 124 86.3
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.4e-50 203.4 130 77.7
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 7.4e-21 105.9 128 47.7
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.8e-20 104.0 58 79.3
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 1.2e-10 72.0 332 23.2
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 3.4e-10 70.5 326 23.6


User provided reference genes

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