Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 0.0e+00 1095.1 553 100.0
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 2.5e-237 825.5 506 83.0
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 8.8e-235 817.0 506 82.0
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 7.4e-234 813.9 506 82.2
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 3.7e-209 731.9 509 73.1
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 4.5e-207 724.9 505 71.7
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 1.0e-206 723.8 508 73.4
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 2.0e-202 709.5 505 71.1
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 3.4e-202 708.8 507 71.0
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 9.8e-202 707.2 509 71.9
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 9.8e-202 707.2 508 70.9
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 1.1e-200 703.7 518 68.9
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 1.1e-200 703.7 509 71.7
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 2.4e-200 702.6 514 70.8
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 2.0e-199 699.5 516 69.2
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.7e-198 696.4 508 69.9
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 2.3e-198 696.0 508 69.9
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 6.6e-198 694.5 508 70.1
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 8.6e-198 694.1 503 69.0
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 2.1e-196 689.5 509 68.8
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 2.8e-196 689.1 514 66.9
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 2.8e-196 689.1 506 69.4
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.1e-195 687.2 509 69.9
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 1.8e-195 686.4 511 68.5
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 1.8e-195 686.4 514 68.9
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 6.8e-195 684.5 514 67.7
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 7.5e-194 681.0 513 66.7
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.3e-193 680.2 512 68.8
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.3e-193 680.2 512 68.9
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 1.3e-193 680.2 510 67.1
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 2.2e-193 679.5 513 66.9
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 1.4e-192 676.8 509 69.4
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 2.7e-191 672.5 502 67.3
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.5e-191 672.2 512 68.2
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 6.0e-191 671.4 506 68.0
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 2.3e-190 669.5 502 67.3
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 3.0e-190 669.1 506 67.4
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 1.9e-189 666.4 507 67.5
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 4.3e-189 665.2 508 65.9
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 1.2e-188 663.7 508 66.9
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 3.6e-188 662.1 503 65.8
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 1.4e-187 660.2 511 66.1
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 2.3e-187 659.4 516 64.3
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 4.0e-187 658.7 511 65.9
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 7.6e-186 654.4 509 67.4
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 2.9e-185 652.5 512 65.6
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 6.4e-185 651.4 512 65.2
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 1.4e-184 650.2 512 64.8
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 1.4e-184 650.2 509 66.0
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 5.4e-184 648.3 513 65.3
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 7.1e-184 647.9 514 63.0
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 9.2e-184 647.5 509 65.8
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 1.6e-183 646.7 511 63.0
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 8.6e-182 641.0 515 64.9
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 5.6e-181 638.3 512 64.8
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 3.1e-179 632.5 509 63.5
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 4.0e-179 632.1 515 64.1
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 5.2e-179 631.7 507 64.3
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 8.4e-177 624.4 509 63.1
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 8.4e-177 624.4 513 62.0
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 1.9e-176 623.2 509 63.7
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 1.9e-176 623.2 510 62.9
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 1.9e-176 623.2 510 63.1
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 1.6e-175 620.2 503 63.0
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 1.6e-175 620.2 524 62.2
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 1.1e-173 614.0 511 63.0
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 1.5e-173 613.6 528 60.2
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 1.1e-171 607.4 507 61.9
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 2.9e-169 599.4 510 61.2
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 4.9e-169 598.6 510 61.2
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 4.9e-169 598.6 510 61.2
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 1.4e-168 597.0 508 61.4
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 3.2e-168 595.9 518 59.3
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 5.4e-168 595.1 489 63.2
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 3.5e-167 592.4 522 60.2
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 2.3e-166 589.7 519 59.9
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 3.3e-165 585.9 510 59.2
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 7.3e-165 584.7 519 59.3
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 7.3e-165 584.7 515 59.4
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 1.3e-164 583.9 513 59.6
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 1.3e-164 583.9 513 59.6
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.6e-164 583.6 513 57.9
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.1e-163 580.9 508 57.5
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 2.4e-163 579.7 506 59.3
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 2.6e-162 576.2 510 59.2
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 9.9e-162 574.3 508 56.9
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 3.8e-161 572.4 505 59.4
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 4.2e-160 568.9 512 59.4
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 1.6e-159 567.0 513 57.9
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.1e-157 560.8 417 66.4
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 4.0e-155 552.4 524 55.2
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 9.0e-155 551.2 511 56.0
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 1.1e-152 544.3 510 56.7
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 5.3e-147 525.4 547 50.3
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 9.0e-147 524.6 503 57.9
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 3.3e-141 506.1 417 63.1
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 9.0e-139 498.0 521 49.7
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 2.2e-137 493.4 502 56.4
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 2.9e-137 493.0 527 52.0
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 1.6e-135 487.3 511 54.4
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 2.8e-132 476.5 357 66.7
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 2.0e-130 470.3 366 64.5
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 2.2e-129 466.8 498 50.0
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 7.2e-104 382.1 383 51.4
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 1.6e-98 364.4 520 40.2
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.7e-97 360.9 510 41.2
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 3.6e-95 353.2 503 43.3
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 4.1e-91 339.7 361 49.3
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 1.7e-89 334.3 503 39.4
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 1.7e-84 317.8 472 40.7
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 7.3e-64 249.2 271 49.1
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 4.0e-54 216.9 551 29.0
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 1.5e-53 214.9 235 53.6
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 2.2e-52 211.1 198 54.0
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 2.1e-42 177.9 155 54.8
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 1.6e-34 151.8 128 64.8
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 2.1e-34 151.4 81 84.0
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 7.4e-32 142.9 146 49.3
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 1.6e-31 141.7 159 47.2
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 1.4e-30 138.7 235 33.2
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 4.3e-24 117.1 101 51.5
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 1.6e-23 115.2 209 33.0
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 7.7e-21 106.3 86 52.3
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 7.2e-19 99.8 65 76.9
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 9.4e-19 99.4 138 43.5
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 2.1e-18 98.2 209 32.5
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.1e-18 98.2 65 70.8
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 6.7e-17 93.2 167 38.9
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 1.3e-12 79.0 95 44.2
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 8.5e-12 76.3 76 55.3
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 6.7e-09 66.6 101 40.6
Dinv21729 Davidia involucrata HOM05D005402 ORTHO05D007036 1.8e-06 58.5 69 53.6
CDE05G1743 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 4.1e-06 57.4 50 50.0
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 4.1e-06 57.4 41 78.0


User provided reference genes

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