Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.4e-234 815.1 398 100.0
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 5.1e-208 727.6 399 89.0
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.0e-204 715.7 399 86.7
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.9e-202 709.1 398 85.9
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 6.2e-190 667.5 399 79.2
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 4.0e-189 664.8 399 79.9
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 3.4e-188 661.8 399 78.9
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 1.1e-183 646.7 399 78.7
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.9e-183 646.0 401 78.6
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 2.1e-182 642.5 399 78.7
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 6.2e-182 641.0 399 77.7
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.4e-181 639.8 401 76.8
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 1.2e-180 636.7 399 77.7
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 2.0e-180 636.0 399 76.7
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 3.4e-180 635.2 398 76.1
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 4.5e-180 634.8 398 75.6
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.7e-179 632.9 639 55.7
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 1.7e-179 632.9 398 75.4
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 2.9e-179 632.1 399 76.2
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 2.9e-179 632.1 399 76.9
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.0e-176 623.6 399 75.4
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.3e-176 623.2 399 76.7
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.9e-175 619.4 399 75.4
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 2.8e-174 615.5 399 74.2
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 6.9e-173 610.9 401 73.8
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 6.9e-173 610.9 401 73.8
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 6.9e-173 610.9 399 73.9
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 9.0e-173 610.5 401 74.6
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 3.4e-172 608.6 399 73.9
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 4.5e-172 608.2 399 74.4
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 2.5e-170 602.4 400 73.8
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 1.6e-169 599.7 399 72.9
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.6e-169 599.7 403 74.4
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 6.0e-169 597.8 399 72.9
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.0e-168 597.0 405 72.1
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.3e-168 596.7 399 73.7
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.8e-168 596.3 399 72.2
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 2.3e-168 595.9 400 73.2
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.1e-167 593.6 400 73.8
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.1e-167 593.6 399 71.9
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 3.3e-167 592.0 399 72.2
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.1e-166 589.3 402 72.9
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.1e-166 589.3 402 72.9
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.1e-165 587.0 399 72.2
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.8e-165 586.3 400 72.5
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.2e-164 583.6 399 71.7
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 2.6e-164 582.4 400 72.0
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 3.2e-162 575.5 400 71.2
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.6e-161 573.2 399 70.7
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 2.7e-161 572.4 400 70.5
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.9e-160 568.5 399 69.9
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 8.7e-160 567.4 410 68.5
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 1.3e-158 563.5 404 69.6
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 6.3e-158 561.2 414 69.3
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 6.3e-158 561.2 467 62.5
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 8.2e-158 560.8 399 69.4
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.1e-157 560.5 399 70.2
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 1.8e-157 559.7 412 68.9
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 4.1e-157 558.5 402 68.4
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 9.0e-157 557.4 415 67.5
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.2e-156 557.0 401 68.8
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.5e-156 556.6 416 67.8
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 3.4e-156 555.4 399 69.7
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 5.9e-156 554.7 401 67.8
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 2.9e-155 552.4 399 67.9
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 3.8e-155 552.0 399 68.9
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.5e-155 551.2 416 67.3
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 6.5e-155 551.2 398 67.6
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 9.4e-154 547.4 406 67.2
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 9.4e-154 547.4 415 67.2
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 9.4e-154 547.4 348 76.7
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.1e-153 546.2 395 66.8
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 6.1e-153 544.7 399 65.7
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 7.9e-153 544.3 398 66.8
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.8e-152 543.1 399 66.2
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.9e-152 542.0 394 68.5
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 5.1e-152 541.6 395 66.3
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 6.7e-152 541.2 399 67.2
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.0e-151 539.7 398 67.1
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 7.4e-151 537.7 400 68.0
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 8.2e-150 534.3 396 67.4
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.1e-149 533.9 399 64.4
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.4e-149 532.7 417 64.3
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.4e-149 532.7 396 66.7
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 9.1e-149 530.8 317 79.5
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 9.1e-149 530.8 396 65.9
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.5e-148 530.0 398 65.3
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 1.5e-148 530.0 423 62.4
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 5.9e-148 528.1 424 62.0
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 1.0e-147 527.3 400 67.2
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.3e-147 526.9 399 64.4
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 1.3e-147 526.9 424 62.3
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.7e-147 526.6 399 64.2
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 2.2e-147 526.2 424 61.8
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.8e-147 525.4 399 64.2
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 3.8e-147 525.4 399 64.9
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 5.0e-147 525.0 424 61.6
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 6.5e-147 524.6 407 64.9
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 1.1e-146 523.9 399 63.9
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.1e-146 523.9 400 65.0
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 3.2e-146 522.3 399 64.2
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 4.2e-146 521.9 399 62.9
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 4.2e-146 521.9 400 63.5
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 2.7e-145 519.2 399 63.2
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 2.7e-145 519.2 399 63.2
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 2.7e-145 519.2 399 62.9
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 3.6e-145 518.8 399 62.9
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 3.6e-145 518.8 401 64.8
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 1.8e-144 516.5 442 60.4
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.3e-144 516.2 395 63.0
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 2.6e-143 512.7 398 62.8
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 4.4e-143 511.9 354 68.6
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.3e-142 510.4 395 62.8
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 1.3e-142 510.4 398 63.3
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 1.3e-142 510.4 396 64.1
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.3e-142 510.4 470 56.8
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 2.2e-142 509.6 399 62.9
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 4.8e-142 508.4 398 62.8
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.1e-141 507.3 395 64.3
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 1.4e-141 506.9 398 62.3
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 4.1e-141 505.4 404 62.4
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 9.1e-141 504.2 403 63.5
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 1.5e-140 503.4 402 62.2
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 1.5e-140 503.4 402 62.2
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 1.5e-140 503.4 402 62.2
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.0e-140 503.1 400 62.2
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 3.5e-140 502.3 403 61.5
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-139 500.4 403 61.8
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.7e-139 500.0 403 61.8
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 3.8e-139 498.8 423 59.1
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 3.8e-139 498.8 399 62.4
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 5.5e-138 495.0 396 62.9
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 5.7e-135 485.0 407 62.4
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.4e-133 480.3 370 64.1
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.2e-132 477.2 394 61.7
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 2.0e-132 476.5 517 50.1
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 8.5e-131 471.1 393 59.3
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.1e-130 470.7 282 79.1
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 1.9e-130 469.9 284 79.2
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 4.4e-127 458.8 404 58.4
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.6e-124 450.3 401 55.4
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 7.5e-119 431.4 409 53.8
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 5.4e-117 425.2 407 51.6
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 9.1e-117 424.5 280 72.5
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 1.2e-111 407.5 285 68.8
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 2.3e-107 393.3 362 56.1
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 3.6e-89 332.8 236 67.8
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.3e-88 330.1 220 72.3
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 5.4e-77 292.4 245 59.6
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 1.9e-74 283.9 220 60.9
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.2e-68 264.6 189 70.9
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 3.0e-67 260.0 191 69.1
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 2.1e-65 253.8 238 54.6
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.8e-65 253.4 159 78.0
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.3e-62 244.6 311 43.4
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.2e-61 240.0 410 41.2
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 2.1e-52 210.7 302 41.7
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 1.1e-48 198.4 455 32.5
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 4.2e-37 159.8 121 66.1
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 5.5e-37 159.5 269 40.1
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.5e-34 150.6 189 45.5
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 2.0e-31 141.0 116 57.8
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.2e-30 137.5 143 53.8
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 1.1e-29 135.2 286 32.5
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.2e-28 131.7 106 64.2
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 4.4e-26 123.2 117 59.0
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 5.7e-26 122.9 663 22.2
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.8e-19 101.3 105 55.2
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.7e-12 76.6 68 54.4
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.8e-09 66.6 50 60.0
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 8.3e-09 65.9 335 24.5
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.8e-08 64.7 50 68.0
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 5.4e-08 63.2 70 50.0
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 3.5e-07 60.5 36 80.6


User provided reference genes

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