Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 5.0e-199 697.6 355 100.0
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 2.1e-160 569.3 355 78.0
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 5.4e-153 544.7 354 77.1
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 4.3e-150 535.0 354 73.7
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 7.3e-150 534.3 351 72.6
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 6.2e-149 531.2 355 74.9
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 3.1e-148 528.9 354 72.9
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 7.1e-145 517.7 354 74.0
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 3.9e-143 511.9 342 72.2
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 2.8e-141 505.8 346 69.4
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 4.7e-141 505.0 346 68.8
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 8.1e-141 504.2 346 69.1
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.1e-140 503.8 354 69.2
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 9.0e-140 500.7 346 68.2
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 4.4e-139 498.4 345 71.3
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 8.4e-138 494.2 349 67.6
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 4.2e-137 491.9 354 68.6
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 4.6e-136 488.4 354 66.4
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 5.1e-135 485.0 351 65.0
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 1.1e-134 483.8 348 68.7
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 3.3e-134 482.3 351 64.4
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 3.3e-134 482.3 352 65.9
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 5.3e-132 474.9 352 63.9
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 5.8e-131 471.5 348 65.8
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.3e-130 470.3 324 70.1
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 2.9e-130 469.2 351 67.8
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 6.4e-130 468.0 340 65.3
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 1.1e-129 467.2 347 64.3
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 1.9e-129 466.5 306 71.9
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 2.4e-129 466.1 347 62.8
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 9.3e-129 464.2 354 66.4
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 1.2e-128 463.8 350 63.7
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 2.7e-128 462.6 349 63.9
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 3.5e-128 462.2 314 70.4
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 3.5e-128 462.2 351 63.2
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 6.0e-128 461.5 352 64.2
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 1.0e-127 460.7 347 64.3
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 3.9e-127 458.8 349 65.3
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 6.7e-127 458.0 349 62.8
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 1.1e-126 457.2 350 63.1
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 1.1e-126 457.2 349 63.0
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 1.5e-126 456.8 392 59.7
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 4.3e-126 455.3 355 62.5
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 7.4e-126 454.5 355 62.5
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 7.4e-126 454.5 347 62.5
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 7.4e-126 454.5 347 62.0
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 7.4e-126 454.5 356 63.2
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 2.1e-125 453.0 356 62.1
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 2.8e-125 452.6 349 62.2
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 2.8e-125 452.6 349 61.9
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 8.1e-125 451.1 341 63.0
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 1.4e-124 450.3 350 66.0
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 2.4e-124 449.5 309 68.6
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 9.0e-124 447.6 342 68.4
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 2.0e-123 446.4 352 60.8
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 2.6e-123 446.0 352 61.6
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 3.4e-123 445.7 352 63.1
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 9.9e-123 444.1 351 61.0
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 1.3e-122 443.7 351 60.7
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 1.7e-122 443.4 342 67.8
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 1.7e-122 443.4 343 62.7
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 1.9e-121 439.9 354 60.2
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 4.2e-121 438.7 362 63.0
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 5.5e-121 438.3 339 63.1
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 7.1e-121 438.0 354 60.2
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 3.9e-119 432.2 354 59.0
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 1.1e-118 430.6 354 58.2
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 1.5e-118 430.3 354 58.2
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 1.9e-118 429.9 310 66.1
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 8.2e-117 424.5 348 63.5
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 8.2e-117 424.5 341 61.6
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 1.1e-116 424.1 353 58.9
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 2.4e-116 422.9 338 59.8
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 2.4e-116 422.9 336 60.4
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 3.4e-115 419.1 351 64.7
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 1.3e-114 417.2 349 57.3
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 2.2e-114 416.4 351 64.1
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 2.9e-114 416.0 349 61.0
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 3.8e-114 415.6 348 60.1
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 6.5e-114 414.8 347 60.5
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 8.4e-114 414.5 363 59.8
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 1.1e-113 414.1 346 62.4
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 1.9e-113 413.3 352 58.0
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 9.3e-113 411.0 346 61.8
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 1.6e-112 410.2 360 56.4
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.6e-112 410.2 352 57.7
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.6e-112 410.2 306 66.3
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 4.6e-112 408.7 246 76.8
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 1.0e-111 407.5 357 56.3
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 1.0e-111 407.5 362 55.0
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.8e-111 406.8 351 56.1
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 3.0e-111 406.0 349 60.7
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 5.1e-111 405.2 323 61.3
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.5e-110 403.7 351 59.0
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 1.9e-110 403.3 348 57.8
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 1.9e-110 403.3 306 62.1
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 1.1e-108 397.5 352 57.4
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 1.5e-107 393.7 340 56.2
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 1.5e-107 393.7 346 55.5
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 5.9e-107 391.7 359 54.6
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 2.2e-106 389.8 341 56.3
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 1.9e-105 386.7 348 55.2
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 2.5e-105 386.3 349 58.7
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 5.5e-105 385.2 357 54.3
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 5.5e-105 385.2 342 59.4
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 9.4e-105 384.4 349 58.5
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 1.2e-104 384.0 348 54.6
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 3.6e-104 382.5 357 54.1
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 4.6e-104 382.1 344 54.9
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 1.8e-103 380.2 348 57.2
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 3.0e-103 379.4 344 54.7
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 5.1e-103 378.6 332 60.2
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 8.8e-103 377.9 342 57.3
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.5e-102 377.1 339 58.7
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 3.3e-102 375.9 342 57.3
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 5.7e-102 375.2 363 55.1
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 1.7e-101 373.6 342 56.1
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 2.2e-101 373.2 342 57.0
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 4.8e-101 372.1 342 56.7
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 3.1e-100 369.4 340 57.4
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 5.3e-100 368.6 399 49.1
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 9.1e-100 367.9 364 54.7
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 7.7e-99 364.8 341 53.4
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 3.2e-97 359.4 268 63.1
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 1.0e-95 354.4 348 52.0
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 1.0e-95 354.4 352 52.3
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 6.7e-95 351.7 277 60.3
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 2.0e-94 350.1 352 51.7
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 3.3e-94 349.4 283 61.5
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 9.7e-94 347.8 351 52.1
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 9.7e-94 347.8 351 52.1
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 2.2e-93 346.7 352 53.1
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 6.3e-93 345.1 336 52.7
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 1.8e-92 343.6 351 51.3
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 1.1e-89 334.3 311 50.5
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 3.6e-88 329.3 348 51.4
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 8.0e-88 328.2 268 61.6
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.8e-84 317.0 325 52.9
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 2.2e-82 310.1 320 48.8
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 9.1e-76 288.1 268 59.3
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 3.8e-74 282.7 331 43.5
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 6.1e-72 275.4 324 42.0
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 2.0e-70 270.4 339 45.1
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 8.6e-66 255.0 338 43.2
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.5e-65 254.2 215 57.2
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.8e-64 250.0 318 44.3
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.4e-63 247.7 318 44.3
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 4.4e-62 242.7 329 39.2
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 9.8e-62 241.5 290 44.5
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 5.9e-59 232.3 342 42.7
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 4.4e-54 216.1 210 47.6
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.7e-53 214.2 327 33.3
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 8.3e-53 211.8 324 37.7
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 7.0e-52 208.8 346 34.7
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 9.5e-49 198.4 191 48.7
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 1.4e-47 194.5 299 35.1
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 6.8e-47 192.2 137 69.3
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 1.7e-45 187.6 272 34.2
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.9e-45 186.8 322 33.5
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.9e-45 186.8 322 33.5
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.1e-44 184.9 137 62.8
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.5e-41 174.5 117 72.6
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.1e-40 170.6 153 54.2
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 1.7e-34 151.0 129 58.1
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.3e-34 150.6 161 49.1
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 3.0e-34 150.2 111 67.6
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.2e-32 144.8 162 49.4
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.8e-24 117.1 258 30.2
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 8.1e-24 115.5 80 62.5
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 1.2e-22 111.7 89 57.3
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 6.6e-18 95.9 74 63.5
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.6e-16 91.3 89 48.3
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 4.0e-15 86.7 116 44.0
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 3.5e-11 73.6 60 55.0
PRCOL_00002048 Prasinoderma coloniale HOM05D000861 ORTHO05D004749 2.6e-06 57.4 239 21.8


User provided reference genes

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