Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G171600 Carya illinoinensis HOM05D000032 ORTHO05D007443 1.1e-93 346.7 175 100.0
CiPaw.08G149900 Carya illinoinensis HOM05D000032 ORTHO05D007443 2.1e-89 332.4 171 98.8
Haze_03984 Corylus avellana HOM05D000032 ORTHO05D007443 2.2e-83 312.4 171 93.0
Cfa006775 Carpinus fangiana HOM05D000032 ORTHO05D007443 1.9e-82 309.3 171 91.8
QL06p038783 Quercus lobata HOM05D000032 ORTHO05D007443 5.5e-82 307.8 171 90.6
Dinv23050 Davidia involucrata HOM05D000032 ORTHO05D007443 2.8e-78 295.4 171 86.0
Potri.007G021800 Populus trichocarpa HOM05D000032 ORTHO05D007443 1.4e-77 293.1 171 85.4
TAR381G1241 Trochodendron aralioides HOM05D000032 ORTHO05D007443 1.4e-77 293.1 171 84.8
CANSAT64G0745 Cannabis sativa HOM05D000032 ORTHO05D007443 9.1e-77 290.4 171 86.5
Sed0005463 Sechium edule HOM05D000032 ORTHO05D007443 2.0e-76 289.3 171 85.4
Actinidia36419 Actinidia chinensis HOM05D000032 ORTHO05D007443 3.4e-76 288.5 171 83.6
MELO3C007659.2 Cucumis melo HOM05D000032 ORTHO05D007443 3.4e-76 288.5 171 84.8
Atru.chr3.1066 Acer truncatum HOM05D000032 ORTHO05D007443 4.5e-76 288.1 171 82.5
ClCG01G017830 Citrullus lanatus HOM05D000032 ORTHO05D007443 4.5e-76 288.1 171 85.4
Eucgr.H02337 Eucalyptus grandis HOM05D000032 ORTHO05D007443 1.0e-75 287.0 171 84.2
vmacro04601 Vaccinium macrocarpon HOM05D000032 ORTHO05D007443 1.7e-75 286.2 171 83.0
CSS0045534 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D007443 2.9e-75 285.4 171 84.2
TWI74G1593 Tripterygium wilfordii HOM05D000032 ORTHO05D007443 2.9e-75 285.4 171 83.0
Prupe.6G216200 Prunus persica HOM05D000032 ORTHO05D007443 3.8e-75 285.0 171 84.8
MBI16_g35719_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D007443 1.4e-74 283.1 171 81.3
CsaV3_6G044370 Cucumis sativus L. HOM05D000032 ORTHO05D007443 1.9e-74 282.7 171 84.2
Manes.13G108500 Manihot esculenta HOM05D000032 ORTHO05D007443 4.2e-74 281.6 173 83.8
Sed0018251 Sechium edule HOM05D000032 ORTHO05D007443 5.5e-74 281.2 171 84.2
Ciclev10025201m.g Citrus clementina HOM05D000032 ORTHO05D007443 7.2e-74 280.8 171 80.7
Sabra07G0018900 Salix brachista HOM05D000032 ORTHO05D007443 9.4e-74 280.4 171 83.0
Cc07_g07410 Coffea canephora HOM05D000032 ORTHO05D007443 1.2e-73 280.0 171 81.9
Lj4C166T2 Lonicera japonica HOM05D000032 ORTHO05D007443 1.6e-73 279.6 171 82.5
PGR102G1941 Punica granatum HOM05D000032 ORTHO05D007443 2.1e-73 279.3 171 81.3
Ca_10121_v3 Cicer arietinum L. HOM05D000032 ORTHO05D007443 7.9e-73 277.3 171 83.6
Glyma.10G152900 Glycine max HOM05D000032 ORTHO05D007443 1.8e-72 276.2 171 83.6
VMungo0720G2333 Vigna mungo HOM05D000032 ORTHO05D007443 5.1e-72 274.6 171 83.0
Thecc.01G077000 Theobroma cacao HOM05D000032 ORTHO05D007443 6.7e-72 274.2 171 79.5
MD02G1190200 Malus domestica HOM05D000032 ORTHO05D007443 1.1e-71 273.5 171 81.3
Peaxi162Scf00423g00221 Petunia axillaris HOM05D000032 ORTHO05D007443 1.1e-71 273.5 171 78.9
Hund16419 Selenicereus undatus HOM05D000032 ORTHO05D007443 1.1e-71 273.5 171 81.3
Rhsim10G0094500 Rhododendron simsii HOM05D000032 ORTHO05D007443 1.5e-71 273.1 188 73.9
Lj5g0020960 Lotus japonicus HOM05D000032 ORTHO05D007443 2.6e-71 272.3 171 82.5
Sopen02g019260 Solanum pennellii HOM05D000032 ORTHO05D007443 3.3e-71 271.9 171 78.4
Nn5g30290 Nelumbo nucifera HOM05D000032 ORTHO05D007443 4.4e-71 271.6 171 80.1
Phvul.007G193500 Phaseolus vulgaris HOM05D000032 ORTHO05D007443 5.7e-71 271.2 171 83.0
PGSC0003DMG400021177 Solanum tuberosum HOM05D000032 ORTHO05D007443 5.7e-71 271.2 171 78.4
THA.LOC104807641 Tarenaya hassleriana HOM05D000032 ORTHO05D007443 5.7e-71 271.2 171 78.9
HanXRQChr11g0323571 Helianthus annuus HOM05D000032 ORTHO05D007443 9.7e-71 270.4 171 79.5
Lalb_Chr09g0323751 Lupinus albus HOM05D000032 ORTHO05D007443 9.7e-71 270.4 171 80.7
COL.COLO4_11621 Corchorus olitorius HOM05D000032 ORTHO05D007443 1.7e-70 269.6 171 78.4
Solyc02g070100.3 Solanum lycopersicum HOM05D000032 ORTHO05D007443 1.7e-70 269.6 171 77.8
PSO541G1009 Papaver somniferum HOM05D000032 ORTHO05D007443 2.2e-70 269.2 171 77.8
PSO675G5622 Papaver somniferum HOM05D000032 ORTHO05D007443 3.7e-70 268.5 171 77.8
Phvul.007G179201 Phaseolus vulgaris HOM05D000032 ORTHO05D007443 4.8e-70 268.1 171 82.5
CAN.G79.11 Capsicum annuum HOM05D000032 ORTHO05D007443 6.3e-70 267.7 171 77.2
CDE01G0309 Ceratophyllum demersum HOM05D000032 ORTHO05D007443 8.2e-70 267.3 171 78.9
RcHm_v2.0_Chr7g0222281 Rosa chinensis HOM05D000032 ORTHO05D007443 1.4e-69 266.5 173 79.8
HanXRQChr10g0318711 Helianthus annuus HOM05D000032 ORTHO05D007443 1.8e-69 266.2 171 78.9
Ah.02g125290 Amaranthus hybridus HOM05D000032 ORTHO05D007443 3.1e-69 265.4 171 78.4
MSTRG.23651 Avicennia marina HOM05D000032 ORTHO05D007443 3.1e-69 265.4 171 78.4
Oeu014318.2 Olea europaea HOM05D000032 ORTHO05D007443 3.1e-69 265.4 171 77.2
Gohir.A11G211800 Gossypium hirsutum HOM05D000032 ORTHO05D007443 1.5e-68 263.1 171 77.8
Gohir.D11G211100 Gossypium hirsutum HOM05D000032 ORTHO05D007443 1.5e-68 263.1 171 77.8
Gorai.007G226800 Gossypium raimondii HOM05D000032 ORTHO05D007443 1.5e-68 263.1 171 77.8
Medtr1g083130 Medicago truncatula HOM05D000032 ORTHO05D007443 2.0e-68 262.7 171 78.9
arahy.Tifrunner.gnm1.ann1.MR2VJ3 Arachis hypogaea HOM05D000032 ORTHO05D007443 2.6e-68 262.3 171 80.7
SGA_v2.0_scaffold121G33068 Striga asiatica HOM05D000032 ORTHO05D007443 2.6e-68 262.3 171 79.5
arahy.Tifrunner.gnm1.ann1.11GZ1T Arachis hypogaea HOM05D000032 ORTHO05D007443 7.7e-68 260.8 171 80.7
arahy.Tifrunner.gnm1.ann1.318AHN Arachis hypogaea HOM05D000032 ORTHO05D007443 7.7e-68 260.8 171 80.7
FvH4_5g29390 Fragaria vesca HOM05D000032 ORTHO05D007443 2.9e-67 258.8 180 76.1
TPR.G6058 Trifolium pratense HOM05D000032 ORTHO05D007443 3.8e-67 258.5 171 78.9
Lsat_1_v5_gn_4_158421 Lactuca sativa HOM05D000032 ORTHO05D007443 5.0e-67 258.1 171 75.4
BcaNung00645 Brassica carinata HOM05D000032 ORTHO05D007443 8.5e-67 257.3 172 75.6
C01p03900 Brassica napus HOM05D000032 ORTHO05D007443 8.5e-67 257.3 172 75.6
BolC1t00383H Brassica oleracea HOM05D000032 ORTHO05D007443 8.5e-67 257.3 172 75.6
A01p03610 Brassica napus HOM05D000032 ORTHO05D007443 2.5e-66 255.8 172 75.0
BraA01t00347Z Brassica rapa HOM05D000032 ORTHO05D007443 2.5e-66 255.8 172 75.0
Migut.H00321 Erythranthe guttata HOM05D000032 ORTHO05D007443 3.2e-66 255.4 172 76.7
Aqoxy3G01532 Aquilegia oxysepala HOM05D000032 ORTHO05D007443 1.6e-65 253.1 171 77.2
Psat6g149960 Pisum sativum HOM05D000032 ORTHO05D007443 2.7e-65 252.3 171 76.6
FAN18G2124 Fragaria x ananassa HOM05D000032 ORTHO05D007443 3.6e-65 251.9 175 76.0
Nitab4.5_0010329g0010 Nicotiana tabacum HOM05D000032 ORTHO05D007443 6.1e-65 251.1 177 71.8
Aa31LG2G15620 Aethionema arabicum HOM05D000032 ORTHO05D007443 8.0e-65 250.8 171 73.1
Nitab4.5_0001225g0240 Nicotiana tabacum HOM05D000032 ORTHO05D007443 1.0e-64 250.4 177 71.8
Thhalv10024759m.g Eutrema salsugineum HOM05D000032 ORTHO05D007443 1.4e-64 250.0 172 74.4
FAN08G0861 Fragaria x ananassa HOM05D000032 ORTHO05D007443 1.4e-64 250.0 175 75.4
FAN13G1203 Fragaria x ananassa HOM05D000032 ORTHO05D007443 3.9e-64 248.4 175 74.9
Sc16g0002800 Simmondsia chinensis HOM05D000032 ORTHO05D007443 3.9e-64 248.4 171 75.4
AUR62007544 Chenopodium quinoa HOM05D000032 ORTHO05D007443 1.1e-63 246.9 164 75.6
Sp7g32660 Schrenkiella parvula HOM05D000032 ORTHO05D007443 2.0e-63 246.1 172 72.7
Os03g0728800 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D007443 1.3e-62 243.4 171 69.6
Thhalv10013368m.g Eutrema salsugineum HOM05D000032 ORTHO05D007443 2.8e-62 242.3 173 72.3
AL7G16320 Arabidopsis lyrata HOM05D000032 ORTHO05D007443 4.8e-62 241.5 173 72.8
A08p16490 Brassica napus HOM05D000032 ORTHO05D007443 4.1e-61 238.4 172 71.5
AT4G34910 Arabidopsis thaliana HOM05D000032 ORTHO05D007443 9.1e-61 237.3 173 71.7
C03p85330 Brassica napus HOM05D000032 ORTHO05D007443 9.1e-61 237.3 173 71.7
BraA08t33617Z Brassica rapa HOM05D000032 ORTHO05D007443 9.1e-61 237.3 173 71.1
FAN04G2244 Fragaria x ananassa HOM05D000032 ORTHO05D007443 9.1e-61 237.3 192 68.2
BcaC01g00863 Brassica carinata HOM05D000032 ORTHO05D007443 2.0e-60 236.1 173 71.1
BolC3t20823H Brassica oleracea HOM05D000032 ORTHO05D007443 2.0e-60 236.1 173 71.1
BcaB03g11802 Brassica carinata HOM05D000032 ORTHO05D007443 4.5e-60 235.0 176 71.0
CARHR243180 Cardamine hirsuta HOM05D000032 ORTHO05D007443 4.5e-60 235.0 172 72.7
Zm00001eb215620 Zea mays HOM05D000032 ORTHO05D007443 1.0e-59 233.8 189 65.6
EL10Ac6g15590 Beta vulgaris HOM05D000032 ORTHO05D007443 2.5e-58 229.2 150 76.7
Carub.0007s0539 Capsella rubella HOM05D000032 ORTHO05D007443 2.7e-57 225.7 171 68.4
PSO675G8515 Papaver somniferum HOM05D000032 ORTHO05D007443 3.6e-57 225.3 187 64.2
ATR0739G078 Amborella trichopoda HOM05D000032 ORTHO05D007443 1.4e-56 223.4 172 70.9
Duzib147G1507 Durio zibethinus HOM05D000032 ORTHO05D007443 1.5e-55 219.9 171 66.7
unitig_899.g14589 Utricularia gibba HOM05D000032 ORTHO05D007443 7.0e-53 211.1 171 64.3
Mapoly0062s0065 Marchantia polymorpha HOM05D000032 ORTHO05D007443 1.2e-52 210.3 179 63.1
SMO116G0033 Selaginella moellendorffii HOM05D000032 ORTHO05D007443 2.0e-52 209.5 172 60.5
Pp3c27_1430 Physcomitrium patens HOM05D000032 ORTHO05D007443 2.1e-49 199.5 180 58.9
SHI12020 Sapria himalayana HOM05D000278 ORTHO05D007443 1.5e-47 193.4 247 47.4
CBR_g22358 Chara braunii HOM05D000032 ORTHO05D007443 5.7e-47 191.4 180 61.7
AagrBONN_evm.TU.Sc2ySwM_362.464 Anthoceros agrestis HOM05D000032 ORTHO05D007443 3.7e-46 188.7 180 57.8
DCAR_004695 Daucus carota HOM05D000032 ORTHO05D007443 8.3e-46 187.6 140 68.6
AUR62004035 Chenopodium quinoa HOM05D000032 ORTHO05D007443 1.6e-41 173.3 171 56.7
HPP92_011749 Vanilla planifolia HOM05D000032 ORTHO05D007443 1.0e-40 170.6 127 70.1
Cpa.g.sc125.34 Carica papaya HOM05D000032 ORTHO05D007443 1.2e-39 167.2 113 75.2
Cre12.g526850 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D007443 1.9e-34 149.8 215 42.3
PRCOL_00005286 Prasinoderma coloniale HOM05D000032 ORTHO05D007443 1.5e-31 140.2 184 46.2
GSVIVG01007277001 Vitis vinifera HOM05D000032 ORTHO05D007443 3.4e-31 139.0 83 84.3
Glyma.20G235400 Glycine max HOM05D000032 ORTHO05D007443 5.4e-29 131.7 83 81.9
Rhsim02G0087100 Rhododendron simsii HOM05D000032 ORTHO05D007443 5.0e-27 125.2 101 62.4
A02p12000 Brassica napus HOM05D000032 ORTHO05D024508 9.5e-26 120.9 80 76.2
A03p42850 Brassica napus HOM05D000032 ORTHO05D024508 1.5e-23 113.6 79 72.2
A09p23380 Brassica napus HOM05D000032 ORTHO05D024508 1.5e-23 113.6 79 72.2
BraA08t34623Z Brassica rapa HOM05D000032 ORTHO05D024508 1.5e-23 113.6 79 72.2
MCO01G015 Micromonas commoda HOM05D000032 ORTHO05D007443 6.4e-22 108.2 189 36.0
BolC1t02621H Brassica oleracea HOM05D000032 ORTHO05D024508 5.4e-21 105.1 73 74.0
Rhsim02G0062600 Rhododendron simsii HOM05D000032 ORTHO05D033876 3.0e-19 99.4 70 65.7
CSS0021770 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D033876 1.0e-11 74.3 84 51.2
CSS0049778 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D033876 1.7e-11 73.6 81 53.1
Sopen10g010180 Solanum pennellii HOM05D000032 ORTHO05D007443 5.6e-10 68.6 48 66.7
Psat7g080400 Pisum sativum HOM05D005567 ORTHO05D005651 1.8e-08 63.5 127 32.3
GSVIVG01021538001 Vitis vinifera HOM05D005567 ORTHO05D005651 4.0e-08 62.4 127 32.3
A03p42430 Brassica napus HOM05D000032 ORTHO05D020098 6.8e-08 61.6 36 83.3
A07p34370 Brassica napus HOM05D000032 ORTHO05D020098 6.8e-08 61.6 36 83.3
Migut.M00885 Erythranthe guttata HOM05D005567 ORTHO05D005651 8.9e-08 61.2 129 31.8
Aqoxy5G03882 Aquilegia oxysepala HOM05D005567 ORTHO05D005651 1.5e-07 60.5 126 31.0
ECA240G2278 Erigeron canadensis HOM05D005567 ORTHO05D005651 1.5e-07 60.5 127 31.5
Phvul.002G179500 Phaseolus vulgaris HOM05D005567 ORTHO05D005651 2.0e-07 60.1 127 30.7
Dinv32216 Davidia involucrata HOM05D005567 ORTHO05D005651 3.4e-07 59.3 127 32.3
Rhsim13G0117000 Rhododendron simsii HOM05D005567 ORTHO05D005651 4.4e-07 58.9 127 30.7
Lj2C923G5 Lonicera japonica HOM05D005567 ORTHO05D005651 5.8e-07 58.5 127 31.5
Lj2C924T4 Lonicera japonica HOM05D005567 ORTHO05D005651 5.8e-07 58.5 127 31.5
Ciclev10025380m.g Citrus clementina HOM05D005567 ORTHO05D005651 7.6e-07 58.2 127 29.9
MBI18_g03007_MAGBIO Magnolia biondii HOM05D005567 ORTHO05D005651 7.6e-07 58.2 127 29.1
Zm00001eb257820 Zea mays HOM05D005567 ORTHO05D005651 7.6e-07 58.2 127 30.7
AagrBONN_evm.TU.Sc2ySwM_117.834 Anthoceros agrestis HOM05D000032 ORTHO05D006669 1.3e-06 57.4 123 32.5
RcHm_v2.0_Chr5g0014641 Rosa chinensis HOM05D005567 ORTHO05D005651 1.3e-06 57.4 125 29.6
MSTRG.16261 Avicennia marina HOM05D005567 ORTHO05D005651 1.7e-06 57.0 127 31.5
FAN16G0453 Fragaria x ananassa HOM05D005567 ORTHO05D005651 1.7e-06 57.0 125 29.6
FAN16G1390 Fragaria x ananassa HOM05D005567 ORTHO05D005651 1.7e-06 57.0 125 29.6
FAN21G1630 Fragaria x ananassa HOM05D005567 ORTHO05D005651 1.7e-06 57.0 125 29.6
FAN25G0576 Fragaria x ananassa HOM05D005567 ORTHO05D005651 1.7e-06 57.0 125 29.6
Hund12175 Selenicereus undatus HOM05D005567 ORTHO05D005651 1.7e-06 57.0 127 30.7
Actinidia13449 Actinidia chinensis HOM05D005567 ORTHO05D005651 2.2e-06 56.6 127 29.9
Cc11_g02850 Coffea canephora HOM05D005567 ORTHO05D005651 2.2e-06 56.6 131 32.1
FvH4_3g05121 Fragaria vesca HOM05D005567 ORTHO05D005651 2.2e-06 56.6 125 29.6
FAN11G3281 Fragaria x ananassa HOM05D005567 ORTHO05D005651 2.2e-06 56.6 125 29.6
HanXRQChr13g0422501 Helianthus annuus HOM05D005567 ORTHO05D005651 2.2e-06 56.6 127 28.3
Hma1.2p1_1794F.1_g302670 Hydrangea macrophylla HOM05D005567 ORTHO05D005651 2.9e-06 56.2 127 30.7
MD05G1280500 Malus domestica HOM05D005567 ORTHO05D005651 2.9e-06 56.2 127 30.7
Prupe.4G084900 Prunus persica HOM05D005567 ORTHO05D005651 3.8e-06 55.8 127 29.1
Rhsim11G0051300 Rhododendron simsii HOM05D005567 ORTHO05D005651 3.8e-06 55.8 127 29.1
CANSAT35G1600 Cannabis sativa HOM05D005567 ORTHO05D005651 4.9e-06 55.5 127 29.9
DCAR_003891 Daucus carota HOM05D005567 ORTHO05D005651 4.9e-06 55.5 127 31.5
Os02g0795900 Oryza sativa ssp. japonica HOM05D005567 ORTHO05D005651 4.9e-06 55.5 127 30.7
Lsat_1_v5_gn_3_121441 Lactuca sativa HOM05D005567 ORTHO05D005651 6.4e-06 55.1 127 29.9
Nn3g20454 Nelumbo nucifera HOM05D005567 ORTHO05D005651 6.4e-06 55.1 127 28.3
SGA_v2.0_scaffold1G00200 Striga asiatica HOM05D005567 ORTHO05D005651 6.4e-06 55.1 127 30.7
TAR626G1087 Trochodendron aralioides HOM05D005567 ORTHO05D005651 8.4e-06 54.7 127 29.1


User provided reference genes

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