Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 1.5e-294 1015.4 505 100.0
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 8.5e-253 876.7 505 85.9
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 2.0e-241 839.0 524 80.3
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 2.7e-238 828.6 499 81.0
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 5.8e-233 810.8 502 78.7
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.0e-230 802.4 491 78.6
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 3.5e-230 801.6 489 79.8
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 5.6e-228 794.3 495 78.0
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.2e-227 793.1 489 77.9
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 1.1e-226 790.0 493 78.3
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 1.8e-226 789.3 481 79.2
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 2.6e-225 785.4 479 78.5
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 4.4e-225 784.6 503 76.3
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 2.9e-224 781.9 503 76.5
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 1.9e-223 779.2 493 77.1
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 4.1e-223 778.1 495 76.0
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.6e-222 776.2 495 76.2
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 2.1e-222 775.8 501 74.9
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 4.6e-222 774.6 496 75.2
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 7.8e-222 773.9 478 79.3
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.7e-221 772.7 486 77.0
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 2.3e-221 772.3 491 76.4
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 6.6e-221 770.8 499 75.4
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 1.1e-220 770.0 490 77.3
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 9.9e-217 756.9 489 75.9
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 2.9e-216 755.4 502 74.3
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.1e-215 753.4 495 74.1
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 1.4e-215 753.1 533 71.5
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 5.4e-215 751.1 506 72.5
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 9.2e-215 750.4 495 73.9
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 9.2e-215 750.4 490 75.1
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.2e-214 750.0 505 72.5
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.7e-213 746.1 474 76.8
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 1.1e-212 743.4 495 72.9
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.6e-211 739.6 512 71.3
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.1e-211 737.3 493 74.2
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.1e-211 737.3 493 74.2
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 8.1e-211 737.3 506 71.5
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 1.4e-210 736.5 473 75.1
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 1.4e-210 736.5 476 73.9
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.8e-210 736.1 502 71.3
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 4.0e-210 734.9 493 71.6
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 6.8e-210 734.2 487 72.7
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 1.2e-209 733.4 493 72.0
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.5e-209 733.0 493 71.2
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 1.5e-209 733.0 475 72.4
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.5e-209 733.0 494 71.5
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 2.6e-209 732.3 512 70.7
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 3.4e-209 731.9 493 72.0
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 7.6e-209 730.7 475 73.7
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 9.9e-209 730.3 503 71.8
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.3e-208 729.9 490 74.1
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.3e-208 729.9 474 74.3
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 2.4e-207 725.7 469 74.0
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 5.4e-207 724.5 506 70.6
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 7.1e-207 724.2 508 70.3
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 1.2e-206 723.4 481 71.5
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 1.6e-206 723.0 477 71.7
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 1.6e-206 723.0 477 71.7
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.7e-206 722.2 493 73.0
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 3.5e-206 721.8 478 71.5
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 4.6e-206 721.5 494 70.0
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 4.6e-206 721.5 489 71.2
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 6.0e-206 721.1 477 71.5
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.0e-205 720.3 491 70.1
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.0e-205 720.3 475 71.6
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 1.3e-205 719.9 466 75.5
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.3e-205 719.9 475 73.1
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 1.9e-204 716.1 488 70.5
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 2.5e-204 715.7 477 71.1
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 7.3e-204 714.1 477 70.9
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.6e-203 713.0 481 73.0
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.6e-203 713.0 503 70.4
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 4.8e-203 711.4 477 71.1
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 6.2e-203 711.1 527 67.0
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 6.2e-203 711.1 459 75.8
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 8.1e-203 710.7 477 71.9
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.8e-202 709.5 487 72.1
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 2.4e-202 709.1 495 71.7
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.6e-201 705.7 490 72.0
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 3.4e-201 705.3 503 70.0
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 4.4e-201 704.9 516 68.0
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 8.4e-200 700.7 465 73.3
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.4e-199 699.9 517 67.9
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 9.3e-199 697.2 493 71.0
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 2.1e-198 696.0 476 70.2
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 6.0e-198 694.5 503 68.4
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 7.9e-198 694.1 475 69.7
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.3e-197 693.3 475 69.7
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 5.1e-197 691.4 469 71.4
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 8.7e-197 690.6 498 67.7
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 2.5e-196 689.1 469 73.3
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 4.3e-196 688.3 470 69.8
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 7.4e-196 687.6 462 71.2
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 9.6e-196 687.2 489 67.7
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.3e-195 686.8 503 67.4
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 2.8e-195 685.6 492 69.3
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 3.6e-195 685.3 642 57.3
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 8.1e-195 684.1 459 70.6
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.2e-193 680.2 484 66.9
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 2.0e-193 679.5 568 61.4
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 3.4e-193 678.7 505 65.7
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 4.5e-193 678.3 493 68.2
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 1.3e-192 676.8 496 66.1
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.7e-192 676.4 473 68.7
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 2.2e-192 676.0 474 70.9
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 5.5e-191 671.4 483 67.9
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 2.1e-190 669.5 493 66.7
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 4.3e-188 661.8 468 69.2
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 2.1e-182 642.9 479 66.6
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 6.7e-181 637.9 484 64.3
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.5e-180 636.0 463 66.5
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.4e-178 630.2 486 66.9
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.8e-178 629.8 546 61.0
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 2.1e-174 616.3 363 82.1
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.8e-171 605.9 366 79.8
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 8.2e-171 604.4 489 64.2
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 3.1e-162 575.9 391 69.3
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.7e-158 562.0 495 60.4
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 2.3e-157 559.7 495 57.2
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 2.4e-154 549.7 466 57.7
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.9e-151 540.0 500 57.2
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 2.0e-148 530.0 466 55.4
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 2.6e-148 529.6 362 70.2
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.4e-146 523.9 491 54.8
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 4.5e-145 518.8 361 72.6
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 9.4e-143 511.1 312 82.7
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 1.2e-140 504.2 326 75.8
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 9.8e-140 501.1 381 67.5
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 7.0e-138 495.0 349 69.6
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.2e-129 467.6 289 76.8
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 6.0e-113 412.1 281 70.8
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 9.8e-108 394.8 243 74.5
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 3.7e-107 392.9 482 45.9
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 4.1e-106 389.4 475 45.3
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.8e-99 366.3 253 72.3
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 4.1e-98 362.8 215 78.1
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 2.7e-97 360.1 216 78.2
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 3.9e-96 356.3 219 77.6
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 3.4e-92 343.2 233 70.4
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 4.4e-92 342.8 241 68.5
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 5.8e-92 342.4 453 41.7
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 3.8e-91 339.7 234 70.9
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 3.3e-87 326.6 276 59.8
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 3.8e-83 313.2 201 74.1
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 8.1e-78 295.4 187 79.1
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 8.4e-75 285.4 472 36.7
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 3.2e-74 283.5 266 51.5
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 9.3e-74 282.0 188 75.5
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.7e-65 253.8 269 53.9
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.0e-64 251.9 484 34.9
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.3e-59 235.0 184 68.5
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 4.3e-55 219.9 175 61.1
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.7e-55 219.5 277 46.9
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.8e-53 214.5 147 72.1
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 6.3e-46 189.5 126 65.9
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.4e-45 188.3 114 76.3
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 1.0e-43 182.2 124 66.1
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 8.8e-40 169.1 137 58.4
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 2.0e-36 157.9 325 35.4
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 5.0e-35 153.3 321 34.3
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 1.0e-32 145.6 153 51.0
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.0e-32 145.6 80 87.5
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 3.0e-32 144.1 168 51.2
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 2.0e-31 141.4 94 66.0
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 4.4e-31 140.2 88 72.7
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.4e-29 135.2 76 84.2
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.2e-28 132.1 77 80.5
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 1.0e-27 129.0 81 70.4
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 1.9e-26 124.8 102 64.7
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 2.6e-23 114.4 64 84.4
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 2.6e-23 114.4 64 82.8
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 7.5e-23 112.8 84 63.1
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 9.8e-23 112.5 94 60.6
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 4.8e-22 110.2 78 61.5
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 4.5e-20 103.6 64 70.3
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 2.5e-18 97.8 80 62.5
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 5.5e-18 96.7 64 68.8
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 7.2e-18 96.3 88 58.0
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 1.0e-16 92.4 55 72.7
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.7e-14 84.0 164 36.6
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 2.7e-12 77.8 51 64.7
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 4.5e-12 77.0 48 77.1
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 9.5e-10 69.3 110 40.9
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.4e-08 65.5 67 50.7
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.0e-07 61.6 155 29.7
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 2.6e-07 61.2 44 59.1


User provided reference genes

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