Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 6.9e-159 563.9 283 100.0
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 3.9e-122 441.8 283 81.6
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 6.1e-115 417.9 314 72.9
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 2.2e-112 409.5 264 80.7
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 8.8e-106 387.5 263 78.7
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 9.7e-105 384.0 228 84.2
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 2.8e-104 382.5 254 76.8
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 4.8e-104 381.7 227 85.0
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.1e-103 380.6 276 74.3
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 5.3e-103 378.3 230 84.3
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 2.0e-102 376.3 252 76.2
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 4.5e-102 375.2 276 73.2
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 5.9e-102 374.8 221 85.5
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 1.3e-101 373.6 228 81.1
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 3.8e-101 372.1 238 80.3
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 1.9e-100 369.8 236 80.9
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 3.2e-100 369.0 220 85.0
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 4.2e-100 368.6 282 72.0
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 4.2e-100 368.6 246 78.0
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 5.5e-100 368.2 219 83.1
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 7.2e-100 367.9 276 71.4
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 7.2e-100 367.9 287 70.7
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 9.4e-100 367.5 239 80.3
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 1.2e-99 367.1 231 80.1
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 2.7e-99 365.9 238 79.0
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 3.6e-99 365.5 283 69.6
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 8.0e-99 364.4 261 74.3
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 3.0e-98 362.5 250 75.6
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 4.0e-98 362.1 283 70.0
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 5.2e-98 361.7 219 83.6
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 2.6e-97 359.4 224 82.1
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 4.4e-97 358.6 244 75.8
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 7.5e-97 357.8 283 70.7
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 2.2e-96 356.3 249 74.7
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 2.2e-96 356.3 235 77.0
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 8.3e-96 354.4 227 78.0
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 1.1e-95 354.0 207 85.0
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 1.1e-95 354.0 260 73.1
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 3.1e-95 352.4 208 86.1
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 4.1e-95 352.1 236 75.8
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 7.0e-95 351.3 284 66.5
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 5.9e-94 348.2 282 66.0
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 5.9e-94 348.2 285 67.7
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 7.7e-94 347.8 227 76.2
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 1.0e-93 347.4 298 64.8
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 1.7e-93 346.7 237 75.5
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 2.9e-93 345.9 228 76.8
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 3.8e-93 345.5 228 76.8
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 3.8e-93 345.5 238 74.8
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 3.8e-93 345.5 232 73.7
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 3.8e-93 345.5 260 71.9
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 3.8e-93 345.5 219 77.2
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 8.6e-93 344.4 219 76.7
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.5e-92 343.6 219 76.7
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 1.5e-92 343.6 238 75.6
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 1.9e-92 343.2 227 76.7
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 2.5e-92 342.8 232 73.3
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 3.3e-92 342.4 256 71.1
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 3.3e-92 342.4 283 65.7
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 3.3e-92 342.4 218 79.4
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 7.2e-92 341.3 280 66.1
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 9.5e-92 340.9 228 73.7
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 1.2e-91 340.5 231 74.9
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 1.2e-91 340.5 218 77.5
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.2e-91 340.5 219 76.7
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 1.6e-91 340.1 216 77.8
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 1.6e-91 340.1 186 88.2
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 2.1e-91 339.7 202 82.7
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 3.6e-91 339.0 215 76.7
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 3.6e-91 339.0 239 73.2
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 4.7e-91 338.6 216 77.3
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 4.7e-91 338.6 216 78.2
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 1.0e-90 337.4 216 77.8
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.4e-90 337.0 213 78.9
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 3.0e-90 335.9 242 72.3
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 6.8e-90 334.7 216 77.3
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.0e-89 333.2 213 77.0
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 2.0e-89 333.2 216 76.9
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 9.8e-89 330.9 211 76.3
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 1.3e-88 330.5 235 71.1
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 6.3e-88 328.2 277 65.0
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 1.8e-87 326.6 220 75.9
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 1.8e-87 326.6 208 76.4
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 9.2e-87 324.3 272 65.1
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 1.6e-86 323.6 218 75.7
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.6e-86 323.6 207 75.8
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 1.6e-86 323.6 257 67.3
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 2.0e-86 323.2 187 85.0
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 2.7e-86 322.8 257 68.1
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 3.5e-86 322.4 274 63.9
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 7.8e-86 321.2 277 65.0
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 7.8e-86 321.2 253 68.4
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 1.0e-85 320.9 269 65.1
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 5.0e-85 318.5 251 66.9
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 8.6e-85 317.8 256 66.0
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 5.6e-84 315.1 278 61.9
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 2.8e-83 312.8 215 74.9
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 4.7e-83 312.0 201 76.6
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 4.7e-83 312.0 217 73.3
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 1.0e-82 310.8 273 63.4
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 1.4e-82 310.5 274 61.7
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.8e-82 310.1 215 72.1
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 2.3e-82 309.7 199 77.9
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 5.8e-81 305.1 226 67.7
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 5.8e-81 305.1 211 73.0
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 3.0e-77 292.7 254 62.6
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 5.0e-77 292.0 212 67.0
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 1.3e-72 277.3 214 64.0
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 1.2e-70 270.8 205 69.3
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 3.3e-68 262.7 198 66.2
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 6.0e-62 241.9 174 64.4
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 4.4e-57 225.7 180 59.4
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 8.1e-51 204.9 132 75.8
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 2.2e-48 196.8 114 85.1
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 4.2e-47 192.6 149 63.1
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 5.4e-47 192.2 237 45.6
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 3.6e-43 179.5 207 47.8
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 3.8e-24 116.3 194 36.1
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 6.7e-21 105.5 75 73.3
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 2.8e-19 100.1 78 65.4
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.0e-17 94.0 56 76.8
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 2.0e-12 77.4 93 45.2
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 5.7e-12 75.9 61 62.3
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 7.2e-07 58.9 171 26.9
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 7.2e-07 58.9 192 25.5
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 9.4e-07 58.5 216 25.9
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 9.4e-07 58.5 208 26.0
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 1.2e-06 58.2 208 26.4
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 1.2e-06 58.2 108 31.5
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 2.1e-06 57.4 246 26.0
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 2.1e-06 57.4 246 26.0
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 4.7e-06 56.2 242 26.4
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 4.7e-06 56.2 226 20.8
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 6.1e-06 55.8 226 20.8
CANSAT56G4077 Cannabis sativa HOM05D002933 ORTHO05D009221 7.9e-06 55.5 253 22.5


User provided reference genes

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