Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G148900 Carya illinoinensis HOM05D007847 ORTHO05D009946 1.3e-176 622.9 293 100.0
QL06p038286 Quercus lobata HOM05D007847 ORTHO05D009946 9.6e-148 526.9 289 84.1
Haze_03966 Corylus avellana HOM05D007847 ORTHO05D009946 4.5e-137 491.5 296 78.0
Manes.13G107200 Manihot esculenta HOM05D007847 ORTHO05D009946 3.8e-128 461.8 293 71.0
MD02G1192700 Malus domestica HOM05D007847 ORTHO05D009946 1.6e-126 456.4 288 70.8
RcHm_v2.0_Chr2g0109231 Rosa chinensis HOM05D007847 ORTHO05D009946 2.1e-126 456.1 293 71.3
TAR381G1308 Trochodendron aralioides HOM05D007847 ORTHO05D009946 2.3e-125 452.6 287 72.8
Dinv26974 Davidia involucrata HOM05D007847 ORTHO05D009946 5.1e-125 451.4 296 71.6
TWI77G0524 Tripterygium wilfordii HOM05D007847 ORTHO05D009946 5.1e-125 451.4 293 69.6
CANSAT01G1865 Cannabis sativa HOM05D007847 ORTHO05D009946 6.7e-125 451.1 293 72.7
Actinidia11949 Actinidia chinensis HOM05D007847 ORTHO05D009946 7.4e-124 447.6 293 72.0
FvH4_1g18540 Fragaria vesca HOM05D007847 ORTHO05D009946 1.3e-123 446.8 293 70.0
Ciclev10026132m.g Citrus clementina HOM05D007847 ORTHO05D009946 2.8e-123 445.7 289 70.2
FAN19G2742 Fragaria x ananassa HOM05D007847 ORTHO05D009946 1.4e-122 443.4 295 69.5
CSS0006637 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 3.1e-122 442.2 285 70.9
CSS0008963 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 7.0e-122 441.0 285 70.5
Duzib264G0083 Durio zibethinus HOM05D007847 ORTHO05D009946 7.0e-122 441.0 289 67.5
FAN23G2885 Fragaria x ananassa HOM05D007847 ORTHO05D009946 2.0e-121 439.5 301 68.4
Gorai.003G033500 Gossypium raimondii HOM05D007847 ORTHO05D009946 2.2e-120 436.0 293 67.2
Nn5g30695 Nelumbo nucifera HOM05D007847 ORTHO05D009946 4.2e-119 431.8 287 67.6
Gohir.D03G032000 Gossypium hirsutum HOM05D007847 ORTHO05D009946 1.8e-117 426.4 293 66.2
Cfa006792 Carpinus fangiana HOM05D007847 ORTHO05D009946 3.0e-117 425.6 237 80.6
FAN28G0215 Fragaria x ananassa HOM05D007847 ORTHO05D009946 3.0e-117 425.6 301 66.8
Cc07_g07550 Coffea canephora HOM05D007847 ORTHO05D009946 4.4e-116 421.8 291 63.6
AL8G43460 Arabidopsis lyrata HOM05D007847 ORTHO05D009946 2.2e-115 419.5 290 65.5
Thhalv10004606m.g Eutrema salsugineum HOM05D007847 ORTHO05D009946 6.3e-115 417.9 292 65.8
BraA06t26189Z Brassica rapa HOM05D007847 ORTHO05D009946 9.1e-114 414.1 292 64.7
Solyc03g043870.3 Solanum lycopersicum HOM05D007847 ORTHO05D009946 1.6e-113 413.3 286 65.0
Sopen03g007680 Solanum pennellii HOM05D007847 ORTHO05D009946 1.6e-113 413.3 293 64.2
THA.LOC104819277 Tarenaya hassleriana HOM05D007847 ORTHO05D009946 1.6e-113 413.3 298 64.1
C03p59920 Brassica napus HOM05D007847 ORTHO05D009946 2.0e-113 412.9 294 65.0
BolC3t18257H Brassica oleracea HOM05D007847 ORTHO05D009946 2.0e-113 412.9 294 65.0
Carub.0008s2664 Capsella rubella HOM05D007847 ORTHO05D009946 1.7e-112 409.8 287 65.2
Sabra07G0006500 Salix brachista HOM05D007847 ORTHO05D009946 2.2e-112 409.5 271 68.3
Aqoxy6G02972 Aquilegia oxysepala HOM05D007847 ORTHO05D009946 6.5e-112 407.9 290 63.4
PSO541G2530 Papaver somniferum HOM05D007847 ORTHO05D009946 8.5e-112 407.5 287 64.8
A06p32610 Brassica napus HOM05D007847 ORTHO05D009946 3.2e-111 405.6 292 63.4
Thecc.01G078900 Theobroma cacao HOM05D007847 ORTHO05D009946 1.4e-109 400.2 294 64.6
Prupe.6G213700 Prunus persica HOM05D007847 ORTHO05D009946 2.3e-109 399.4 282 66.3
ECA238G4198 Erigeron canadensis HOM05D007847 ORTHO05D009946 2.6e-108 396.0 288 63.5
PSO675G2957 Papaver somniferum HOM05D007847 ORTHO05D009946 3.3e-108 395.6 286 61.5
Atru.chr3.1082 Acer truncatum HOM05D007847 ORTHO05D009946 1.7e-107 393.3 245 71.8
HanXRQChr14g0447671 Helianthus annuus HOM05D007847 ORTHO05D009946 2.2e-107 392.9 276 65.9
Migut.H00314 Erythranthe guttata HOM05D007847 ORTHO05D009946 4.8e-107 391.7 287 59.9
Sc22g0002130 Simmondsia chinensis HOM05D007847 ORTHO05D009946 6.3e-107 391.3 282 63.1
DCAR_010781 Daucus carota HOM05D007847 ORTHO05D009946 1.4e-106 390.2 266 65.0
Gohir.A02G148500 Gossypium hirsutum HOM05D007847 ORTHO05D009946 5.3e-106 388.3 293 61.8
Peaxi162Scf00118g01311 Petunia axillaris HOM05D007847 ORTHO05D009946 7.7e-105 384.4 276 63.0
PGR102G2702 Punica granatum HOM05D007847 ORTHO05D009946 1.0e-104 384.0 293 58.4
Oeu013362.2 Olea europaea HOM05D007847 ORTHO05D009946 1.7e-104 383.3 266 63.9
BcaC01g02838 Brassica carinata HOM05D007847 ORTHO05D009946 1.5e-103 380.2 292 61.6
MBI16_g08505_MAGBIO Magnolia biondii HOM05D007847 ORTHO05D009946 4.7e-102 375.2 278 61.2
COL.COLO4_11640 Corchorus olitorius HOM05D007847 ORTHO05D009946 5.7e-100 368.2 270 64.1
Potri.007G008300 Populus trichocarpa HOM05D007847 ORTHO05D009946 5.4e-98 361.7 235 68.1
Nitab4.5_0005210g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 1.6e-97 360.1 281 61.2
Zm00001eb215660 Zea mays HOM05D007847 ORTHO05D009946 6.6e-96 354.8 279 57.3
FAN26G2270 Fragaria x ananassa HOM05D007847 ORTHO05D009946 6.1e-94 348.2 321 55.8
Os03g0726900 Oryza sativa ssp. japonica HOM05D007847 ORTHO05D009946 9.8e-92 340.9 279 55.6
ATR0629G045 Amborella trichopoda HOM05D007847 ORTHO05D009946 4.5e-89 332.0 286 51.0
Nitab4.5_0002639g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 1.5e-84 317.0 244 60.2
AT5G65740 Arabidopsis thaliana HOM05D007847 ORTHO05D009946 3.3e-79 299.3 215 62.8
Eucgr.F02827 Eucalyptus grandis HOM05D007847 ORTHO05D009946 3.3e-79 299.3 288 50.7
MSTRG.2798 Avicennia marina HOM05D007847 ORTHO05D009946 6.8e-77 291.6 221 59.7
SEGI_26913 Sequoiadendron giganteum HOM05D007847 ORTHO05D009946 5.8e-76 288.5 274 47.4
CARHR279740 Cardamine hirsuta HOM05D007847 ORTHO05D009946 2.2e-75 286.6 223 58.7
Lj4C169G8 Lonicera japonica HOM05D007847 ORTHO05D009946 1.1e-71 274.2 289 51.6
Cpa.g.sc129.54 Carica papaya HOM05D007847 ORTHO05D009946 3.1e-69 266.2 230 57.0
AagrBONN_evm.TU.Sc2ySwM_362.720 Anthoceros agrestis HOM05D007847 ORTHO05D009946 3.7e-67 259.2 278 42.8
Mapoly0084s0053 Marchantia polymorpha HOM05D007847 ORTHO05D009946 7.1e-66 255.0 275 42.2
Pp3c23_15090 Physcomitrium patens HOM05D007847 ORTHO05D009946 3.9e-64 249.2 273 41.4
HPP92_003710 Vanilla planifolia HOM05D007847 ORTHO05D009946 3.3e-63 246.1 211 54.0
SGA_v2.0_scaffold121G33081 Striga asiatica HOM05D007847 ORTHO05D009946 5.6e-63 245.4 368 37.8
Lsat_1_v5_gn_2_80401 Lactuca sativa HOM05D007847 ORTHO05D009946 1.5e-60 237.3 203 53.7
PGSC0003DMG400017101 Solanum tuberosum HOM05D007847 ORTHO05D009946 4.4e-60 235.7 228 51.8
MD15G1303100 Malus domestica HOM05D007847 ORTHO05D009946 1.6e-46 190.7 135 69.6
MD15G1303200 Malus domestica HOM05D007847 ORTHO05D009946 7.9e-41 171.8 109 74.3
CAN.G82.24 Capsicum annuum HOM05D007847 ORTHO05D009946 6.9e-37 158.7 111 63.1
Cre03.g204801 Chlamydomonas reinhardtii HOM05D007847 ORTHO05D009946 6.7e-32 142.1 368 27.2
Actinidia36408 Actinidia chinensis HOM05D007847 ORTHO05D009946 1.6e-25 120.9 176 42.6
Sp2g28840 Schrenkiella parvula HOM05D007847 ORTHO05D009946 9.7e-23 111.7 67 71.6
CDE02G3555 Ceratophyllum demersum HOM05D007847 ORTHO05D009946 3.0e-16 90.1 65 64.6
TAR375G0706 Trochodendron aralioides HOM05D006116 ORTHO05D009946 1.5e-07 61.2 44 59.1
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 1.7e-06 57.8 118 30.5
MBI01_g18879_MAGBIO Magnolia biondii HOM05D007847 ORTHO05D009946 2.8e-06 57.0 41 56.1


User provided reference genes

Program Settings