Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G096000 Carya illinoinensis HOM05D002098 ORTHO05D001998 4.0e-33 144.1 66 100.0
CiPaw.08G096200 Carya illinoinensis HOM05D002098 ORTHO05D001998 4.8e-23 110.5 59 88.1
CiPaw.07G107400 Carya illinoinensis HOM05D002098 ORTHO05D001998 7.0e-22 106.7 57 80.7
Haze_04914 Corylus avellana HOM05D002098 ORTHO05D001998 1.0e-20 102.8 57 77.2
Haze_04916 Corylus avellana HOM05D002098 ORTHO05D001998 2.3e-20 101.7 57 75.4
Cfa005927 Carpinus fangiana HOM05D002098 ORTHO05D001998 3.8e-20 100.9 57 75.4
Cfa005928 Carpinus fangiana HOM05D002098 ORTHO05D001998 5.0e-20 100.5 57 77.2
Cfa005929 Carpinus fangiana HOM05D002098 ORTHO05D001998 5.0e-20 100.5 57 77.2
Haze_04917 Corylus avellana HOM05D002098 ORTHO05D001998 6.6e-20 100.1 57 75.4
QL12p027414 Quercus lobata HOM05D002098 ORTHO05D001998 8.6e-20 99.8 56 78.6
Haze_04918 Corylus avellana HOM05D002098 ORTHO05D001998 1.2e-18 95.9 57 71.9
Gohir.A12G130900 Gossypium hirsutum HOM05D002098 ORTHO05D001998 4.7e-18 94.0 57 70.2
Gohir.D12G134800 Gossypium hirsutum HOM05D002098 ORTHO05D001998 4.7e-18 94.0 57 70.2
Gorai.008G145700 Gossypium raimondii HOM05D002098 ORTHO05D001998 4.7e-18 94.0 57 70.2
Thecc.01G298800 Theobroma cacao HOM05D002098 ORTHO05D001998 4.7e-18 94.0 57 71.9
Cfa005930 Carpinus fangiana HOM05D002098 ORTHO05D001998 8.0e-18 93.2 57 71.9
COL.COLO4_23359 Corchorus olitorius HOM05D002098 ORTHO05D001998 8.0e-18 93.2 57 68.4
RcHm_v2.0_Chr6g0293831 Rosa chinensis HOM05D002098 ORTHO05D001998 8.0e-18 93.2 59 72.9
FvH4_2g25590 Fragaria vesca HOM05D002098 ORTHO05D001998 4.0e-17 90.9 59 69.5
FAN20G2125 Fragaria x ananassa HOM05D002098 ORTHO05D001998 4.0e-17 90.9 59 69.5
FAN27G1414 Fragaria x ananassa HOM05D002098 ORTHO05D001998 4.0e-17 90.9 59 69.5
Duzib133G0198 Durio zibethinus HOM05D002098 ORTHO05D001998 5.2e-17 90.5 57 71.9
FAN15G3162 Fragaria x ananassa HOM05D002098 ORTHO05D001998 8.9e-17 89.7 59 67.8
QL04p042125 Quercus lobata HOM05D002098 ORTHO05D001998 2.0e-16 88.6 57 61.4
TAR365G0118 Trochodendron aralioides HOM05D002098 ORTHO05D001998 5.7e-16 87.0 56 69.6
GSVIVG01027992001 Vitis vinifera HOM05D002098 ORTHO05D001998 5.7e-16 87.0 56 67.9
TWI59G0306 Tripterygium wilfordii HOM05D002098 ORTHO05D001998 1.3e-15 85.9 57 66.7
TWI14G1425 Tripterygium wilfordii HOM05D002098 ORTHO05D001998 1.7e-15 85.5 57 64.9
Ciclev10021143m.g Citrus clementina HOM05D002098 ORTHO05D001998 2.2e-15 85.1 58 67.2
Gorai.011G160400 Gossypium raimondii HOM05D002098 ORTHO05D001998 2.8e-15 84.7 64 59.4
Lalb_Chr15g0078541 Lupinus albus HOM05D002098 ORTHO05D001998 3.7e-15 84.3 57 64.9
Nn4g25814 Nelumbo nucifera HOM05D002098 ORTHO05D001998 4.9e-15 84.0 57 63.2
Gohir.D10G143550 Gossypium hirsutum HOM05D002098 ORTHO05D001998 6.3e-15 83.6 64 57.8
Glyma.03G214100 Glycine max HOM05D002098 ORTHO05D001998 1.1e-14 82.8 57 63.2
Potri.014G130300 Populus trichocarpa HOM05D002098 ORTHO05D001998 3.1e-14 81.3 57 63.2
Gohir.A11G114766 Gossypium hirsutum HOM05D002098 ORTHO05D001998 7.0e-14 80.1 60 61.7
TWI23G0303 Tripterygium wilfordii HOM05D002098 ORTHO05D001998 7.0e-14 80.1 57 63.2
Cpa.g.sc9.225 Carica papaya HOM05D002098 ORTHO05D001998 9.2e-14 79.7 57 64.9
Duzib138G0204 Durio zibethinus HOM05D002098 ORTHO05D001998 9.2e-14 79.7 56 62.5
Glyma.19G210900 Glycine max HOM05D002098 ORTHO05D001998 1.2e-13 79.3 57 63.2
Manes.01G218000 Manihot esculenta HOM05D002098 ORTHO05D001998 1.2e-13 79.3 58 63.8
VMungo1383G0742 Vigna mungo HOM05D002098 ORTHO05D001998 1.2e-13 79.3 57 61.4
CANSAT25G0461 Cannabis sativa HOM05D002098 ORTHO05D001998 2.0e-13 78.6 56 58.9
CANSAT25G2138 Cannabis sativa HOM05D002098 ORTHO05D001998 2.0e-13 78.6 56 58.9
MD03G1287000 Malus domestica HOM05D002098 ORTHO05D001998 5.9e-13 77.0 57 61.4
Manes.05G063000 Manihot esculenta HOM05D002098 ORTHO05D001998 5.9e-13 77.0 58 60.3
Sabra14G0096800 Salix brachista HOM05D002098 ORTHO05D001998 7.8e-13 76.6 57 59.6
Hund05418 Selenicereus undatus HOM05D002098 ORTHO05D001998 1.3e-12 75.9 58 60.3
Hma1.2p1_0209F.1_g088470 Hydrangea macrophylla HOM05D002098 ORTHO05D001998 1.7e-12 75.5 58 62.1
TAR636G3477 Trochodendron aralioides HOM05D002098 ORTHO05D001998 1.7e-12 75.5 58 62.1
CSS0023982 Camellia sinensis var. sinensis HOM05D002098 ORTHO05D001998 3.9e-12 74.3 61 59.0
CSS0044567 Camellia sinensis var. sinensis HOM05D002098 ORTHO05D001998 3.9e-12 74.3 61 59.0
Potri.002G205400 Populus trichocarpa HOM05D002098 ORTHO05D001998 5.0e-12 73.9 56 58.9
Actinidia32223 Actinidia chinensis HOM05D002098 ORTHO05D001998 6.6e-12 73.6 58 62.1
Eucgr.H01152 Eucalyptus grandis HOM05D002098 ORTHO05D001998 1.5e-11 72.4 59 59.3
DCAR_018335 Daucus carota HOM05D002098 ORTHO05D001998 1.9e-11 72.0 64 51.6
MD11G1313200 Malus domestica HOM05D002098 ORTHO05D001998 1.9e-11 72.0 56 60.7
MD11G1313600 Malus domestica HOM05D002098 ORTHO05D001998 1.9e-11 72.0 56 60.7
Sabra14G0096900 Salix brachista HOM05D002098 ORTHO05D001998 1.9e-11 72.0 57 56.1
ATR0796G017 Amborella trichopoda HOM05D002098 ORTHO05D001998 5.6e-11 70.5 56 57.1
Oeu054125.1 Olea europaea HOM05D002098 ORTHO05D001998 7.3e-11 70.1 58 55.2
Lalb_Chr21g0306821 Lupinus albus HOM05D002098 ORTHO05D001998 9.5e-11 69.7 57 54.4
EL10Ac7g17458 Beta vulgaris HOM05D002098 ORTHO05D001998 1.2e-10 69.3 58 55.2
THA.LOC104825972 Tarenaya hassleriana HOM05D002098 ORTHO05D001998 2.1e-10 68.6 59 55.9
AUR62008649 Chenopodium quinoa HOM05D002098 ORTHO05D001998 2.8e-10 68.2 59 55.9
AUR62033119 Chenopodium quinoa HOM05D002098 ORTHO05D001998 2.8e-10 68.2 59 55.9
Lj1A26T27 Lonicera japonica HOM05D002098 ORTHO05D001998 2.8e-10 68.2 62 56.5
Migut.D00208 Erythranthe guttata HOM05D002098 ORTHO05D001998 3.6e-10 67.8 63 50.8
Os07g0673200 Oryza sativa ssp. japonica HOM05D002098 ORTHO05D001998 3.6e-10 67.8 56 57.1
Nn3g21463 Nelumbo nucifera HOM05D002098 ORTHO05D001998 4.7e-10 67.4 57 52.6
Phvul.001G206800 Phaseolus vulgaris HOM05D002098 ORTHO05D001998 4.7e-10 67.4 57 54.4
ClCG09G005930 Citrullus lanatus HOM05D002098 ORTHO05D001998 6.1e-10 67.0 63 52.4
Aa31LG1G9730 Aethionema arabicum HOM05D002098 ORTHO05D001998 8.0e-10 66.6 63 55.6
MSTRG.18161 Avicennia marina HOM05D002098 ORTHO05D001998 8.0e-10 66.6 65 50.8
Cc09_g05500 Coffea canephora HOM05D002098 ORTHO05D001998 8.0e-10 66.6 69 50.7
Medtr7g108840 Medicago truncatula HOM05D002098 ORTHO05D001998 8.0e-10 66.6 57 59.6
Medtr8g058547 Medicago truncatula HOM05D002098 ORTHO05D001998 8.0e-10 66.6 57 59.6
Medtr8g058603 Medicago truncatula HOM05D002098 ORTHO05D001998 8.0e-10 66.6 57 59.6
Lj1g0004377 Lotus japonicus HOM05D002098 ORTHO05D001998 1.0e-09 66.2 68 52.9
Lj5g0008276 Lotus japonicus HOM05D002098 ORTHO05D001998 1.0e-09 66.2 58 56.9
arahy.Tifrunner.gnm1.ann1.1W5D66 Arachis hypogaea HOM05D002098 ORTHO05D001998 1.8e-09 65.5 59 54.2
Sp1g01850 Schrenkiella parvula HOM05D002098 ORTHO05D001998 1.8e-09 65.5 58 56.9
PGSC0003DMG400011399 Solanum tuberosum HOM05D002098 ORTHO05D001998 1.8e-09 65.5 71 50.7
TPR.G9619 Trifolium pratense HOM05D002098 ORTHO05D001998 1.8e-09 65.5 57 57.9
DCAR_012394 Daucus carota HOM05D002098 ORTHO05D001998 2.3e-09 65.1 71 43.7
Sabra02G0153900 Salix brachista HOM05D002098 ORTHO05D001998 3.1e-09 64.7 62 51.6
Hund18129 Selenicereus undatus HOM05D002098 ORTHO05D001998 3.1e-09 64.7 57 54.4
Sopen09g029860 Solanum pennellii HOM05D002098 ORTHO05D001998 3.1e-09 64.7 71 52.1
Lj2C1192G10 Lonicera japonica HOM05D002098 ORTHO05D001998 4.0e-09 64.3 73 49.3
Thhalv10008149m.g Eutrema salsugineum HOM05D002098 ORTHO05D001998 5.2e-09 63.9 63 54.0
Rhsim13G0011200 Rhododendron simsii HOM05D002098 ORTHO05D001998 5.2e-09 63.9 66 53.0
Carub.0001s0198 Capsella rubella HOM05D002098 ORTHO05D001998 6.8e-09 63.5 65 50.8
Solyc09g075040.3 Solanum lycopersicum HOM05D002098 ORTHO05D001998 6.8e-09 63.5 71 50.7
arahy.Tifrunner.gnm1.ann1.NH86F6 Arachis hypogaea HOM05D002098 ORTHO05D001998 8.9e-09 63.2 59 52.5
A10p01510 Brassica napus HOM05D002098 ORTHO05D001998 1.2e-08 62.8 58 55.2
BolC5t28930H Brassica oleracea HOM05D002098 ORTHO05D001998 1.2e-08 62.8 58 55.2
BraA10t42427Z Brassica rapa HOM05D002098 ORTHO05D001998 1.2e-08 62.8 58 55.2
CDE08G1096 Ceratophyllum demersum HOM05D002098 ORTHO05D001998 1.2e-08 62.8 57 49.1
BcaB03g15759 Brassica carinata HOM05D002098 ORTHO05D001998 1.5e-08 62.4 58 55.2
BcaC05g24588 Brassica carinata HOM05D002098 ORTHO05D001998 1.5e-08 62.4 58 55.2
C05p01480 Brassica napus HOM05D002098 ORTHO05D001998 1.5e-08 62.4 58 55.2
vmacro02458 Vaccinium macrocarpon HOM05D002098 ORTHO05D001998 2.0e-08 62.0 61 52.5
Ca_10344_v3 Cicer arietinum L. HOM05D002098 ORTHO05D001998 3.4e-08 61.2 58 53.4
Psat3g021000 Pisum sativum HOM05D002098 ORTHO05D001998 3.4e-08 61.2 60 53.3
CARHR002200 Cardamine hirsuta HOM05D002098 ORTHO05D001998 4.4e-08 60.8 64 51.6
HPP92_000410 Vanilla planifolia HOM05D002098 ORTHO05D001998 4.4e-08 60.8 65 41.5
Ah.08g213120 Amaranthus hybridus HOM05D002098 ORTHO05D001998 7.5e-08 60.1 57 52.6
arahy.Tifrunner.gnm1.ann1.KF9MFH Arachis hypogaea HOM05D002098 ORTHO05D001998 7.5e-08 60.1 63 46.0
Lalb_Chr03g0034861 Lupinus albus HOM05D002098 ORTHO05D001998 7.5e-08 60.1 59 54.2
Peaxi162Scf00001g00481 Petunia axillaris HOM05D002098 ORTHO05D001998 7.5e-08 60.1 64 48.4
Sp1g01840 Schrenkiella parvula HOM05D002098 ORTHO05D001998 7.5e-08 60.1 59 54.2
HanXRQChr06g0163821 Helianthus annuus HOM05D002098 ORTHO05D001998 9.8e-08 59.7 66 48.5
MD03G1286900 Malus domestica HOM05D002098 ORTHO05D001998 9.8e-08 59.7 57 52.6
Phvul.007G143600 Phaseolus vulgaris HOM05D002098 ORTHO05D001998 9.8e-08 59.7 57 47.4
PGR119G0803 Punica granatum HOM05D002098 ORTHO05D001998 9.8e-08 59.7 67 47.8
PGR119G1987 Punica granatum HOM05D002098 ORTHO05D001998 9.8e-08 59.7 67 47.8
BcaC07g42299 Brassica carinata HOM05D002098 ORTHO05D001998 1.3e-07 59.3 64 50.0
CsaV3_7G029190 Cucumis sativus L. HOM05D002098 ORTHO05D001998 1.3e-07 59.3 62 50.0
AL1G12270 Arabidopsis lyrata HOM05D002098 ORTHO05D001998 3.7e-07 57.8 59 49.2
Medtr1g088660 Medicago truncatula HOM05D002098 ORTHO05D001998 3.7e-07 57.8 58 51.7
Sed0026520 Sechium edule HOM05D002098 ORTHO05D001998 3.7e-07 57.8 64 46.9
A09p68490 Brassica napus HOM05D002098 ORTHO05D001998 4.9e-07 57.4 61 55.7
BraA09t42192Z Brassica rapa HOM05D002098 ORTHO05D001998 4.9e-07 57.4 61 55.7
Lsat_1_v5_gn_8_53481 Lactuca sativa HOM05D002098 ORTHO05D001998 4.9e-07 57.4 68 48.5
Sc05g0003950 Simmondsia chinensis HOM05D002098 ORTHO05D001998 4.9e-07 57.4 62 46.8
AT1G02860 Arabidopsis thaliana HOM05D002098 ORTHO05D001998 6.4e-07 57.0 59 49.2
HanXRQChr15g0465911 Helianthus annuus HOM05D002098 ORTHO05D001998 6.4e-07 57.0 61 45.9
Lalb_Chr06g0163451 Lupinus albus HOM05D002098 ORTHO05D001998 6.4e-07 57.0 47 55.3
MELO3C016008.2 Cucumis melo HOM05D002098 ORTHO05D001998 8.3e-07 56.6 62 48.4
arahy.Tifrunner.gnm1.ann1.WED796 Arachis hypogaea HOM05D002098 ORTHO05D001998 1.1e-06 56.2 64 43.8
VMungo0720G1238 Vigna mungo HOM05D002098 ORTHO05D001998 1.4e-06 55.8 56 46.4
HanXRQChr10g0284511 Helianthus annuus HOM05D002098 ORTHO05D001998 1.9e-06 55.5 64 50.0
Ciclev10024252m.g Citrus clementina HOM05D002098 ORTHO05D001998 2.4e-06 55.1 65 43.1
Glyma.10G018800 Glycine max HOM05D002098 ORTHO05D001998 2.4e-06 55.1 58 46.6
TPR.G33957 Trifolium pratense HOM05D002098 ORTHO05D001998 2.4e-06 55.1 60 48.3
Aqoxy5G00743 Aquilegia oxysepala HOM05D002098 ORTHO05D001998 3.2e-06 54.7 39 64.1
EL10Ac6g15539 Beta vulgaris HOM05D002098 ORTHO05D001998 4.1e-06 54.3 52 48.1
MBI19_g26909_MAGBIO Magnolia biondii HOM05D002098 ORTHO05D001998 4.1e-06 54.3 46 50.0
unitig_0.g660 Utricularia gibba HOM05D002098 ORTHO05D001998 4.1e-06 54.3 63 46.0
PSO170G6730 Papaver somniferum HOM05D002098 ORTHO05D001998 5.4e-06 53.9 60 46.7
Lsat_1_v5_gn_9_5901 Lactuca sativa HOM05D002098 ORTHO05D001998 9.2e-06 53.1 37 64.9


User provided reference genes

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