Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.3e-265 919.1 445 100.0
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 4.2e-187 658.3 528 65.5
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 2.7e-178 629.0 521 65.1
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 6.6e-148 528.1 464 62.5
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 8.3e-127 458.0 524 49.4
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 2.4e-113 413.3 516 46.5
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 2.4e-113 413.3 516 46.5
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 8.7e-108 394.8 529 44.8
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 3.3e-107 392.9 522 44.3
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 6.2e-106 388.7 494 46.4
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 1.1e-105 387.9 498 47.8
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 1.3e-103 380.9 494 46.6
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 2.2e-103 380.2 655 39.2
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.4e-102 377.5 549 42.3
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 1.9e-102 377.1 541 44.0
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 1.2e-101 374.4 453 48.8
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 6.0e-101 372.1 475 46.7
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 6.0e-101 372.1 523 41.5
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.6e-98 364.0 549 40.6
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 2.8e-98 363.2 517 43.3
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.8e-97 360.5 544 40.3
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 2.4e-97 360.1 592 39.0
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 5.3e-97 359.0 502 43.6
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 3.4e-96 356.3 502 43.0
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 4.5e-96 355.9 485 42.9
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 4.5e-96 355.9 464 48.5
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.3e-95 354.4 540 40.9
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 2.2e-95 353.6 488 43.6
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 1.1e-94 351.3 537 40.4
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 1.4e-94 350.9 477 43.0
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 1.8e-92 344.0 497 42.9
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 1.1e-91 341.3 487 43.9
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.5e-91 340.9 521 40.3
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 2.5e-91 340.1 501 44.3
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 2.5e-91 340.1 474 45.6
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 3.3e-91 339.7 480 42.3
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 4.3e-91 339.3 484 42.8
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 1.4e-89 334.3 491 42.4
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.8e-89 334.0 501 42.1
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 3.1e-89 333.2 501 42.1
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 1.2e-88 331.3 338 54.7
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 1.5e-88 330.9 513 40.7
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 2.6e-88 330.1 514 40.1
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 3.4e-88 329.7 501 41.9
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 4.5e-88 329.3 497 41.4
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 1.7e-87 327.4 465 43.9
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 5.0e-87 325.9 440 46.4
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 8.4e-87 325.1 494 42.5
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 1.9e-86 323.9 412 49.5
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 4.6e-85 319.3 544 38.6
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 1.1e-83 314.7 347 49.0
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 1.9e-83 313.9 438 45.7
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 3.3e-83 313.2 338 52.4
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 7.4e-83 312.0 438 43.4
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 8.2e-82 308.5 493 40.2
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 6.9e-81 305.4 442 39.8
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 2.6e-80 303.5 438 39.7
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 3.4e-80 303.1 631 35.8
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 2.2e-79 300.4 462 41.6
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 8.5e-79 298.5 639 35.5
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 8.5e-79 298.5 513 38.6
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 6.1e-77 292.4 297 52.5
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 7.9e-77 292.0 473 39.5
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 7.9e-77 292.0 405 45.7
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 4.3e-75 286.2 523 37.5
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 4.8e-74 282.7 430 41.6
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 4.1e-73 279.6 516 35.9
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 6.9e-73 278.9 526 36.9
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 1.3e-71 274.6 404 42.6
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 2.5e-70 270.4 344 45.3
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 3.6e-69 266.5 405 40.7
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 3.0e-68 263.5 496 36.7
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 3.9e-68 263.1 497 37.6
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 5.7e-67 259.2 311 45.7
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 1.7e-66 257.7 463 35.4
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 2.2e-66 257.3 484 35.1
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 2.8e-66 256.9 309 44.0
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 4.8e-66 256.1 634 33.0
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 4.8e-66 256.1 309 46.0
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 2.4e-65 253.8 425 41.4
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 2.6e-64 250.4 484 37.2
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 5.5e-62 242.7 489 34.8
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 1.2e-61 241.5 484 35.7
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 1.6e-61 241.1 459 36.4
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 2.1e-61 240.7 472 35.2
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 4.7e-61 239.6 509 33.8
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 5.2e-60 236.1 483 32.9
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 1.1e-59 235.0 320 43.8
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 6.3e-58 229.2 396 37.4
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 2.6e-56 223.8 305 43.9
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 2.6e-56 223.8 279 44.1
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 5.9e-56 222.6 315 44.8
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.3e-55 221.5 394 37.3
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 5.0e-55 219.5 288 41.3
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 7.2e-54 215.7 307 39.7
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 2.1e-53 214.2 318 40.3
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 1.0e-52 211.8 308 42.9
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 3.4e-51 206.8 335 40.9
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 5.7e-51 206.1 425 34.6
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 2.2e-50 204.1 281 42.3
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 8.3e-50 202.2 217 48.4
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 1.1e-49 201.8 154 63.0
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 2.5e-46 190.7 501 28.9
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 5.5e-46 189.5 233 45.1
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 1.0e-44 185.3 459 32.5
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 7.5e-43 179.1 305 38.7
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 8.3e-42 175.6 457 32.8
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 1.4e-41 174.9 300 37.7
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 1.4e-41 174.9 423 33.6
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 9.1e-41 172.2 234 44.9
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 9.1e-41 172.2 222 45.9
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 1.2e-40 171.8 215 45.6
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 2.7e-40 170.6 322 35.4
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 3.8e-39 166.8 349 35.0
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 8.6e-39 165.6 241 42.3
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 4.2e-38 163.3 311 36.3
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 7.2e-38 162.5 315 36.5
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 7.2e-38 162.5 155 52.3
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 1.6e-37 161.4 234 40.6
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 1.6e-37 161.4 234 40.6
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 2.1e-37 161.0 286 36.7
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 1.0e-36 158.7 261 38.7
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 4.4e-35 153.3 114 63.2
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 1.3e-34 151.8 120 60.0
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 3.7e-34 150.2 316 36.1
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 4.9e-34 149.8 307 33.6
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 4.9e-34 149.8 307 33.6
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 1.8e-33 147.9 307 33.2
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 2.4e-33 147.5 313 33.2
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 2.7e-32 144.1 290 33.4
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 4.7e-29 133.3 214 37.4
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 1.8e-28 131.3 202 38.6
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 1.8e-28 131.3 294 34.7
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 1.5e-27 128.3 265 29.8
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 4.9e-26 123.2 284 34.5
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 6.6e-23 112.8 294 30.6
GSVIVG01035550001 Vitis vinifera HOM05D003999 ORTHO05D005219 7.3e-22 109.4 87 55.2
Phvul.007G142700 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 1.6e-21 108.2 195 37.4
Manes.03G002401 Manihot esculenta HOM05D003999 ORTHO05D005219 1.5e-19 101.7 131 41.2
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 4.4e-19 100.1 320 27.5
Cfa020674 Carpinus fangiana HOM05D003999 ORTHO05D005219 3.7e-18 97.1 78 57.7
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 3.7e-18 97.1 296 26.4
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 4.9e-18 96.7 372 26.3
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 2.3e-15 87.8 147 34.0
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 5.6e-14 83.2 202 33.2
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 2.2e-10 71.2 150 29.3
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.9e-10 70.9 150 29.3
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 3.7e-10 70.5 163 30.7
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 6.4e-10 69.7 403 24.1
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.1e-09 68.9 148 29.7
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 2.4e-09 67.8 150 32.7
Sabra06G0056200 Salix brachista HOM05D003999 ORTHO05D005219 2.4e-09 67.8 126 42.9
Phvul.009G117400 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 4.6e-08 63.5 72 44.4
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 3.3e-06 57.4 210 26.7


User provided reference genes

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